Scutellaria californica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075909.1 · 3–76 bp · −
psbA · PQ075909.1 · 364–1,422 bp · −
trnK-UUU · PQ075909.1 · 1,663–4,260 bp · −
matK · PQ075909.1 · 1,958–3,493 bp · −
rps16 · PQ075909.1 · 5,163–6,331 bp · −
trnQ-UUG · PQ075909.1 · 7,457–7,528 bp · −
trnS-GCU · PQ075909.1 · 8,657–8,744 bp · −
atpA · PQ075909.1 · 10,519–12,042 bp · −
atpF · PQ075909.1 · 12,116–13,342 bp · −
atpH · PQ075909.1 · 13,701–13,946 bp · −
atpI · PQ075909.1 · 14,944–15,687 bp · −
rps2 · PQ075909.1 · 16,038–16,874 bp · −
rpoC2 · PQ075909.1 · 16,965–21,164 bp · −
rpoC1 · PQ075909.1 · 21,319–24,148 bp · −
rpoB · PQ075909.1 · 24,175–27,387 bp · −
psbM · PQ075909.1 · 30,427–30,531 bp · −
trnD-GUC · PQ075909.1 · 31,057–31,130 bp · −
trnY-GUA · PQ075909.1 · 31,244–31,327 bp · −
trnE-UUC · PQ075909.1 · 31,387–31,459 bp · −
trnS-UGA · PQ075909.1 · 36,091–36,182 bp · −
trnfM-CAU · PQ075909.1 · 37,187–37,260 bp · −
rps14 · PQ075909.1 · 37,410–37,712 bp · −
psaB · PQ075909.1 · 37,838–40,042 bp · −
psaA · PQ075909.1 · 40,068–42,320 bp · −
ycf3 · PQ075909.1 · 42,994–44,916 bp · −
rps4 · PQ075909.1 · 46,169–46,774 bp · −
trnT-UGU · PQ075909.1 · 47,113–47,185 bp · −
ndhJ · PQ075909.1 · 49,461–49,937 bp · −
ndhK · PQ075909.1 · 50,046–50,723 bp · −
ndhC · PQ075909.1 · 50,776–51,138 bp · −
trnV-UAC · PQ075909.1 · 52,128–52,780 bp · −
atpE · PQ075909.1 · 53,243–53,644 bp · −
atpB · PQ075909.1 · 53,641–55,128 bp · −
psbJ · PQ075909.1 · 64,873–64,995 bp · −
psbL · PQ075909.1 · 65,130–65,246 bp · −
psbF · PQ075909.1 · 65,270–65,389 bp · −
psbE · PQ075909.1 · 65,404–65,655 bp · −
trnW-CCA · PQ075909.1 · 67,066–67,139 bp · −
trnP-UGG · PQ075909.1 · 67,309–67,382 bp · −
rpl20 · PQ075909.1 · 69,136–69,522 bp · −
rps12 · PQ075909.1 · 70,306–70,431 bp · −
rps12 · PQ075909.1 · 97,659–98,449 bp · −
clpP · PQ075909.1 · 70,574–72,507 bp · −
psbN · PQ075909.1 · 74,870–75,001 bp · −
rpoA · PQ075909.1 · 78,371–79,384 bp · −
rps11 · PQ075909.1 · 79,456–79,872 bp · −
rpl36 · PQ075909.1 · 79,974–80,087 bp · −
infA · PQ075909.1 · 80,183–80,416 bp · −
rps8 · PQ075909.1 · 80,536–80,946 bp · −
rpl14 · PQ075909.1 · 81,115–81,483 bp · −
rpl16 · PQ075909.1 · 81,610–82,854 bp · −
rps3 · PQ075909.1 · 83,009–83,671 bp · −
rpl22 · PQ075909.1 · 83,673–84,128 bp · −
rps19 · PQ075909.1 · 84,188–84,466 bp · −
rpl2 · PQ075909.1 · 84,521–86,003 bp · −
rpl23 · PQ075909.1 · 86,022–86,303 bp · −
trnI-CAU · PQ075909.1 · 86,463–86,536 bp · −
trnL-CAA · PQ075909.1 · 94,029–94,109 bp · −
ndhB · PQ075909.1 · 94,652–96,809 bp · −
rps7 · PQ075909.1 · 97,138–97,605 bp · −
trnN-GUU · PQ075909.1 · 108,488–108,559 bp · −
ndhF · PQ075909.1 · 109,636–111,876 bp · −
ndhD · PQ075909.1 · 114,385–115,887 bp · −
psaC · PQ075909.1 · 116,007–116,252 bp · −
ndhE · PQ075909.1 · 116,509–116,814 bp · −
ndhG · PQ075909.1 · 117,024–117,554 bp · −
ndhI · PQ075909.1 · 117,919–118,419 bp · −
ndhA · PQ075909.1 · 118,500–120,592 bp · −
ndhH · PQ075909.1 · 120,594–121,805 bp · −
rps15 · PQ075909.1 · 121,878–122,150 bp · −
ycf1 · PQ075909.1 · 122,412–128,066 bp · −
trnR-ACG · PQ075909.1 · 128,904–128,977 bp · −
rrn5 · PQ075909.1 · 129,212–129,332 bp · −
rrn4.5 · PQ075909.1 · 129,580–129,682 bp · −
rrn23 · PQ075909.1 · 129,781–132,593 bp · −
trnA-UGC · PQ075909.1 · 132,763–133,644 bp · −
trnI-GAU · PQ075909.1 · 133,709–134,729 bp · −
ycf68 · PQ075909.1 · 134,335–134,574 bp · −
rrn16 · PQ075909.1 · 135,028–136,518 bp · −
trnV-GAC · PQ075909.1 · 136,746–136,817 bp · −
ycf15 · PQ075909.1 · 143,071–143,268 bp · −
ycf2 · PQ075909.1 · 143,410–150,219 bp · −
psbK · PQ075909.1 · 7,853–8,038 bp · +
psbI · PQ075909.1 · 8,430–8,540 bp · +
trnG-UCC · PQ075909.1 · 9,416–10,176 bp · +
trnR-UCU · PQ075909.1 · 10,351–10,422 bp · +
trnC-GCA · PQ075909.1 · 28,549–28,619 bp · +
petN · PQ075909.1 · 29,333–29,422 bp · +
trnT-GGU · PQ075909.1 · 32,042–32,113 bp · +
psbD · PQ075909.1 · 33,417–34,478 bp · +
psbC · PQ075909.1 · 34,426–35,847 bp · +
psbZ · PQ075909.1 · 36,503–36,691 bp · +
trnG-GCC · PQ075909.1 · 36,963–37,033 bp · +
trnS-GGA · PQ075909.1 · 45,803–45,889 bp · +
trnL-UAA · PQ075909.1 · 47,860–48,428 bp · +
trnF-GAA · PQ075909.1 · 48,734–48,806 bp · +
trnM-CAU · PQ075909.1 · 52,961–53,033 bp · +
rbcL · PQ075909.1 · 55,881–57,344 bp · +
accD · PQ075909.1 · 58,074–59,540 bp · +
psaI · PQ075909.1 · 60,257–60,367 bp · +
ycf4 · PQ075909.1 · 60,775–61,329 bp · +
cemA · PQ075909.1 · 62,075–62,674 bp · +
petA · PQ075909.1 · 62,881–63,843 bp · +
petL · PQ075909.1 · 66,563–66,658 bp · +
petG · PQ075909.1 · 66,834–66,947 bp · +
psaJ · PQ075909.1 · 67,655–67,789 bp · +
rpl33 · PQ075909.1 · 68,261–68,461 bp · +
rps18 · PQ075909.1 · 68,636–68,941 bp · +
rps12 · PQ075909.1 · 138,395–139,185 bp · +
psbB · PQ075909.1 · 72,995–74,521 bp · +
psbT · PQ075909.1 · 74,695–74,796 bp · +
psbH · PQ075909.1 · 75,105–75,326 bp · +
petB · PQ075909.1 · 75,451–76,818 bp · +
petD · PQ075909.1 · 77,007–78,208 bp · +
ycf2 · PQ075909.1 · 86,625–93,434 bp · +
ycf15 · PQ075909.1 · 93,576–93,773 bp · +
trnV-GAC · PQ075909.1 · 100,027–100,098 bp · +
rrn16 · PQ075909.1 · 100,326–101,816 bp · +
trnI-GAU · PQ075909.1 · 102,115–103,135 bp · +
trnA-UGC · PQ075909.1 · 103,200–104,081 bp · +
rrn23 · PQ075909.1 · 104,251–107,063 bp · +
rrn4.5 · PQ075909.1 · 107,162–107,264 bp · +
rrn5 · PQ075909.1 · 107,512–107,632 bp · +
trnR-ACG · PQ075909.1 · 107,867–107,940 bp · +
rpl32 · PQ075909.1 · 112,398–112,574 bp · +
trnL-UAG · PQ075909.1 · 113,001–113,080 bp · +
ccsA · PQ075909.1 · 113,178–114,152 bp · +
trnN-GUU · PQ075909.1 · 128,285–128,356 bp · +
rps7 · PQ075909.1 · 139,239–139,706 bp · +
ndhB · PQ075909.1 · 140,035–142,192 bp · +
trnL-CAA · PQ075909.1 · 142,735–142,815 bp · +
trnI-CAU · PQ075909.1 · 150,308–150,381 bp · +
rpl23 · PQ075909.1 · 150,541–150,822 bp · +
rpl2 · PQ075909.1 · 150,841–152,323 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria californica
ANNOTATED PLASTOME
PQ075909.1
152,418 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38104 76209 114314 152418 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1663 4260 2598 Locate
matK gene − 1958 3493 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUG gene − 7457 7528 72 Locate
psbK gene + 7853 8038 186 Locate
psbI gene + 8430 8540 111 Locate
trnS-GCU gene − 8657 8744 88 Locate
trnG-UCC gene + 9416 10176 761 Locate
trnR-UCU gene + 10351 10422 72 Locate
atpA gene − 10519 12042 1524 Locate
atpF gene − 12116 13342 1227 Locate
atpH gene − 13701 13946 246 Locate
atpI gene − 14944 15687 744 Locate
rps2 gene − 16038 16874 837 Locate
rpoC2 gene − 16965 21164 4200 Locate
rpoC1 gene − 21319 24148 2830 Locate
rpoB gene − 24175 27387 3213 Locate
trnC-GCA gene + 28549 28619 71 Locate
petN gene + 29333 29422 90 Locate
psbM gene − 30427 30531 105 Locate
trnD-GUC gene − 31057 31130 74 Locate
trnY-GUA gene − 31244 31327 84 Locate
trnE-UUC gene − 31387 31459 73 Locate
trnT-GGU gene + 32042 32113 72 Locate
psbD gene + 33417 34478 1062 Locate
psbC gene + 34426 35847 1422 Locate
trnS-UGA gene − 36091 36182 92 Locate
psbZ gene + 36503 36691 189 Locate
trnG-GCC gene + 36963 37033 71 Locate
trnfM-CAU gene − 37187 37260 74 Locate
rps14 gene − 37410 37712 303 Locate
psaB gene − 37838 40042 2205 Locate
psaA gene − 40068 42320 2253 Locate
ycf3 gene − 42994 44916 1923 Locate
trnS-GGA gene + 45803 45889 87 Locate
rps4 gene − 46169 46774 606 Locate
trnT-UGU gene − 47113 47185 73 Locate
trnL-UAA gene + 47860 48428 569 Locate
trnF-GAA gene + 48734 48806 73 Locate
ndhJ gene − 49461 49937 477 Locate
ndhK gene − 50046 50723 678 Locate
ndhC gene − 50776 51138 363 Locate
trnV-UAC gene − 52128 52780 653 Locate
trnM-CAU gene + 52961 53033 73 Locate
atpE gene − 53243 53644 402 Locate
atpB gene − 53641 55128 1488 Locate
rbcL gene + 55881 57344 1464 Locate
accD gene + 58074 59540 1467 Locate
psaI gene + 60257 60367 111 Locate
ycf4 gene + 60775 61329 555 Locate
cemA gene + 62075 62674 600 Locate
petA gene + 62881 63843 963 Locate
psbJ gene − 64873 64995 123 Locate
psbL gene − 65130 65246 117 Locate
psbF gene − 65270 65389 120 Locate
psbE gene − 65404 65655 252 Locate
petL gene + 66563 66658 96 Locate
petG gene + 66834 66947 114 Locate
trnW-CCA gene − 67066 67139 74 Locate
trnP-UGG gene − 67309 67382 74 Locate
psaJ gene + 67655 67789 135 Locate
rpl33 gene + 68261 68461 201 Locate
rps18 gene + 68636 68941 306 Locate
rpl20 gene − 69136 69522 387 Locate
rps12 gene − 70306 70431 126 Locate
clpP gene − 70574 72507 1934 Locate
psbB gene + 72995 74521 1527 Locate
psbT gene + 74695 74796 102 Locate
psbN gene − 74870 75001 132 Locate
psbH gene + 75105 75326 222 Locate
petB gene + 75451 76818 1368 Locate
petD gene + 77007 78208 1202 Locate
rpoA gene − 78371 79384 1014 Locate
rps11 gene − 79456 79872 417 Locate
rpl36 gene − 79974 80087 114 Locate
infA gene − 80183 80416 234 Locate
rps8 gene − 80536 80946 411 Locate
rpl14 gene − 81115 81483 369 Locate
rpl16 gene − 81610 82854 1245 Locate
rps3 gene − 83009 83671 663 Locate
rpl22 gene − 83673 84128 456 Locate
rps19 gene − 84188 84466 279 Locate
rpl2 gene − 84521 86003 1483 Locate
rpl23 gene − 86022 86303 282 Locate
trnI-CAU gene − 86463 86536 74 Locate
ycf2 gene + 86625 93434 6810 Locate
ycf15 gene + 93576 93773 198 Locate
trnL-CAA gene − 94029 94109 81 Locate
ndhB gene − 94652 96809 2158 Locate
rps7 gene − 97138 97605 468 Locate
rps12 gene − 97659 98449 791 Locate
trnV-GAC gene + 100027 100098 72 Locate
rrn16 gene + 100326 101816 1491 Locate
trnI-GAU gene + 102115 103135 1021 Locate
trnA-UGC gene + 103200 104081 882 Locate
rrn23 gene + 104251 107063 2813 Locate
rrn4.5 gene + 107162 107264 103 Locate
rrn5 gene + 107512 107632 121 Locate
trnR-ACG gene + 107867 107940 74 Locate
trnN-GUU gene − 108488 108559 72 Locate
ndhF gene − 109636 111876 2241 Locate
rpl32 gene + 112398 112574 177 Locate
trnL-UAG gene + 113001 113080 80 Locate
ccsA gene + 113178 114152 975 Locate
ndhD gene − 114385 115887 1503 Locate
psaC gene − 116007 116252 246 Locate
ndhE gene − 116509 116814 306 Locate
ndhG gene − 117024 117554 531 Locate
ndhI gene − 117919 118419 501 Locate
ndhA gene − 118500 120592 2093 Locate
ndhH gene − 120594 121805 1212 Locate
rps15 gene − 121878 122150 273 Locate
ycf1 gene − 122412 128066 5655 Locate
trnN-GUU gene + 128285 128356 72 Locate
trnR-ACG gene − 128904 128977 74 Locate
rrn5 gene − 129212 129332 121 Locate
rrn4.5 gene − 129580 129682 103 Locate
rrn23 gene − 129781 132593 2813 Locate
trnA-UGC gene − 132763 133644 882 Locate
trnI-GAU gene − 133709 134729 1021 Locate
ycf68 gene − 134335 134574 240 Locate
rrn16 gene − 135028 136518 1491 Locate
trnV-GAC gene − 136746 136817 72 Locate
rps12 gene + 138395 139185 791 Locate
rps7 gene + 139239 139706 468 Locate
ndhB gene + 140035 142192 2158 Locate
trnL-CAA gene + 142735 142815 81 Locate
ycf15 gene − 143071 143268 198 Locate
ycf2 gene − 143410 150219 6810 Locate
trnI-CAU gene + 150308 150381 74 Locate
rpl23 gene + 150541 150822 282 Locate
rpl2 gene + 150841 152323 1483 Locate
Status Available
Accession PQ075909.1
Length 152,418 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources