Coordinate-aware organelle record

Scutellaria californica chloroplast genome

Available PQ075909.1 152,418 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	363	1422	1059
trnK-UUU	gene	translation-rna	−	1662	4260	2598
matK	gene	other	−	1957	3493	1536
rps16	gene	ribosomal-protein	−	5162	6331	1169
trnQ-UUG	gene	translation-rna	−	7456	7528	72
psbK	gene	photosystem-ii	+	7852	8038	186
psbI	gene	photosystem-ii	+	8429	8540	111
trnS-GCU	gene	translation-rna	−	8656	8744	88
trnG-UCC	gene	translation-rna	+	9415	10176	761
trnR-UCU	gene	translation-rna	+	10350	10422	72
atpA	gene	atp-synthase	−	10518	12042	1524
atpF	gene	atp-synthase	−	12115	13342	1227
atpH	gene	atp-synthase	−	13700	13946	246
atpI	gene	atp-synthase	−	14943	15687	744
rps2	gene	ribosomal-protein	−	16037	16874	837
rpoC2	gene	rna-polymerase	−	16964	21164	4200
rpoC1	gene	rna-polymerase	−	21318	24148	2830
rpoB	gene	rna-polymerase	−	24174	27387	3213
trnC-GCA	gene	translation-rna	+	28548	28619	71
petN	gene	cytochrome	+	29332	29422	90
psbM	gene	photosystem-ii	−	30426	30531	105
trnD-GUC	gene	translation-rna	−	31056	31130	74
trnY-GUA	gene	translation-rna	−	31243	31327	84
trnE-UUC	gene	translation-rna	−	31386	31459	73
trnT-GGU	gene	translation-rna	+	32041	32113	72
psbD	gene	photosystem-ii	+	33416	34478	1062
psbC	gene	photosystem-ii	+	34425	35847	1422
trnS-UGA	gene	translation-rna	−	36090	36182	92
psbZ	gene	photosystem-ii	+	36502	36691	189
trnG-GCC	gene	translation-rna	+	36962	37033	71
trnfM-CAU	gene	translation-rna	−	37186	37260	74
rps14	gene	ribosomal-protein	−	37409	37712	303
psaB	gene	photosystem-i	−	37837	40042	2205
psaA	gene	photosystem-i	−	40067	42320	2253
ycf3	gene	other	−	42993	44916	1923
trnS-GGA	gene	translation-rna	+	45802	45889	87
rps4	gene	ribosomal-protein	−	46168	46774	606
trnT-UGU	gene	translation-rna	−	47112	47185	73
trnL-UAA	gene	translation-rna	+	47859	48428	569
trnF-GAA	gene	translation-rna	+	48733	48806	73
ndhJ	gene	nad-dehydrogenase	−	49460	49937	477
ndhK	gene	nad-dehydrogenase	−	50045	50723	678
ndhC	gene	nad-dehydrogenase	−	50775	51138	363
trnV-UAC	gene	translation-rna	−	52127	52780	653
trnM-CAU	gene	translation-rna	+	52960	53033	73
atpE	gene	atp-synthase	−	53242	53644	402
atpB	gene	atp-synthase	−	53640	55128	1488
rbcL	gene	other	+	55880	57344	1464
accD	gene	other	+	58073	59540	1467
psaI	gene	photosystem-i	+	60256	60367	111
ycf4	gene	other	+	60774	61329	555
cemA	gene	other	+	62074	62674	600
petA	gene	cytochrome	+	62880	63843	963
psbJ	gene	photosystem-ii	−	64872	64995	123
psbL	gene	photosystem-ii	−	65129	65246	117
psbF	gene	photosystem-ii	−	65269	65389	120
psbE	gene	photosystem-ii	−	65403	65655	252
petL	gene	cytochrome	+	66562	66658	96
petG	gene	cytochrome	+	66833	66947	114
trnW-CCA	gene	translation-rna	−	67065	67139	74
trnP-UGG	gene	translation-rna	−	67308	67382	74
psaJ	gene	photosystem-i	+	67654	67789	135
rpl33	gene	ribosomal-protein	+	68260	68461	201
rps18	gene	ribosomal-protein	+	68635	68941	306
rpl20	gene	ribosomal-protein	−	69135	69522	387
rps12	gene	ribosomal-protein	−	70305	98449	28144
rps12	gene	ribosomal-protein	+	70305	139185	68880
clpP	gene	other	−	70573	72507	1934
psbB	gene	photosystem-ii	+	72994	74521	1527
psbT	gene	photosystem-ii	+	74694	74796	102
psbN	gene	photosystem-ii	−	74869	75001	132
psbH	gene	photosystem-ii	+	75104	75326	222
petB	gene	cytochrome	+	75450	76818	1368
petD	gene	cytochrome	+	77006	78208	1202
rpoA	gene	rna-polymerase	−	78370	79384	1014
rps11	gene	ribosomal-protein	−	79455	79872	417
rpl36	gene	ribosomal-protein	−	79973	80087	114
infA	gene	other	−	80182	80416	234
rps8	gene	ribosomal-protein	−	80535	80946	411
rpl14	gene	ribosomal-protein	−	81114	81483	369
rpl16	gene	ribosomal-protein	−	81609	82854	1245
rps3	gene	ribosomal-protein	−	83008	83671	663
rpl22	gene	ribosomal-protein	−	83672	84128	456
rps19	gene	ribosomal-protein	−	84187	84466	279
rpl2	gene	ribosomal-protein	−	84520	86003	1483
rpl23	gene	ribosomal-protein	−	86021	86303	282
trnI-CAU	gene	translation-rna	−	86462	86536	74
ycf2	gene	other	+	86624	93434	6810
ycf15	gene	other	+	93575	93773	198
trnL-CAA	gene	translation-rna	−	94028	94109	81
ndhB	gene	nad-dehydrogenase	−	94651	96809	2158
rps7	gene	ribosomal-protein	−	97137	97605	468
trnV-GAC	gene	translation-rna	+	100026	100098	72
rrn16	gene	ribosomal-rna	+	100325	101816	1491
trnI-GAU	gene	translation-rna	+	102114	103135	1021
trnA-UGC	gene	translation-rna	+	103199	104081	882
rrn23	gene	ribosomal-rna	+	104250	107063	2813
rrn4.5	gene	ribosomal-rna	+	107161	107264	103
rrn5	gene	ribosomal-rna	+	107511	107632	121
trnR-ACG	gene	translation-rna	+	107866	107940	74
trnN-GUU	gene	translation-rna	−	108487	108559	72
ndhF	gene	nad-dehydrogenase	−	109635	111876	2241
rpl32	gene	ribosomal-protein	+	112397	112574	177
trnL-UAG	gene	translation-rna	+	113000	113080	80
ccsA	gene	other	+	113177	114152	975
ndhD	gene	nad-dehydrogenase	−	114384	115887	1503
psaC	gene	photosystem-i	−	116006	116252	246
ndhE	gene	nad-dehydrogenase	−	116508	116814	306
ndhG	gene	nad-dehydrogenase	−	117023	117554	531
ndhI	gene	nad-dehydrogenase	−	117918	118419	501
ndhA	gene	nad-dehydrogenase	−	118499	120592	2093
ndhH	gene	nad-dehydrogenase	−	120593	121805	1212
rps15	gene	ribosomal-protein	−	121877	122150	273
ycf1	gene	other	−	122411	128066	5655
trnN-GUU	gene	translation-rna	+	128284	128356	72
trnR-ACG	gene	translation-rna	−	128903	128977	74
rrn5	gene	ribosomal-rna	−	129211	129332	121
rrn4.5	gene	ribosomal-rna	−	129579	129682	103
rrn23	gene	ribosomal-rna	−	129780	132593	2813
trnA-UGC	gene	translation-rna	−	132762	133644	882
trnI-GAU	gene	translation-rna	−	133708	134729	1021
ycf68	gene	other	−	134334	134574	240
rrn16	gene	ribosomal-rna	−	135027	136518	1491
trnV-GAC	gene	translation-rna	−	136745	136817	72
rps7	gene	ribosomal-protein	+	139238	139706	468
ndhB	gene	nad-dehydrogenase	+	140034	142192	2158
trnL-CAA	gene	translation-rna	+	142734	142815	81
ycf15	gene	other	−	143070	143268	198
ycf2	gene	other	−	143409	150219	6810
trnI-CAU	gene	translation-rna	+	150307	150381	74
rpl23	gene	ribosomal-protein	+	150540	150822	282
rpl2	gene	ribosomal-protein	+	150840	152323	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomePQ075909.1DNA · accDPQ075909DNA · atpBPQ075909DNA · matKPQ075909DNA · ndhFPQ075909DNA · psbAPQ075909DNA · rbcLPQ075909DNA · rps12PQ075909DNA · ycf1PQ075909