Scutellaria caudifolia var. obliquifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075908.1 · 3–76 bp · −
psbA · PQ075908.1 · 365–1,423 bp · −
trnK-UUU · PQ075908.1 · 1,665–4,253 bp · −
matK · PQ075908.1 · 1,960–3,495 bp · −
rps16 · PQ075908.1 · 5,135–6,307 bp · −
trnQ-UUG · PQ075908.1 · 7,327–7,398 bp · −
trnS-GCU · PQ075908.1 · 8,520–8,607 bp · −
atpA · PQ075908.1 · 10,388–11,911 bp · −
atpF · PQ075908.1 · 11,994–13,221 bp · −
atpH · PQ075908.1 · 13,577–13,822 bp · −
atpI · PQ075908.1 · 14,818–15,561 bp · −
rps2 · PQ075908.1 · 15,910–16,746 bp · −
rpoC2 · PQ075908.1 · 16,837–21,042 bp · −
rpoC1 · PQ075908.1 · 21,197–24,026 bp · −
rpoB · PQ075908.1 · 24,053–27,265 bp · −
psbM · PQ075908.1 · 30,299–30,403 bp · −
trnD-GUC · PQ075908.1 · 30,930–31,003 bp · −
trnY-GUA · PQ075908.1 · 31,117–31,200 bp · −
trnE-UUC · PQ075908.1 · 31,260–31,332 bp · −
trnS-UGA · PQ075908.1 · 35,953–36,044 bp · −
trnfM-CAU · PQ075908.1 · 37,049–37,122 bp · −
rps14 · PQ075908.1 · 37,272–37,574 bp · −
psaB · PQ075908.1 · 37,702–39,906 bp · −
psaA · PQ075908.1 · 39,932–42,184 bp · −
ycf3 · PQ075908.1 · 42,843–44,766 bp · −
rps4 · PQ075908.1 · 46,014–46,619 bp · −
trnT-UGU · PQ075908.1 · 46,961–47,033 bp · −
ndhJ · PQ075908.1 · 49,307–49,783 bp · −
ndhK · PQ075908.1 · 49,891–50,568 bp · −
ndhC · PQ075908.1 · 50,621–50,983 bp · −
trnV-UAC · PQ075908.1 · 51,845–52,497 bp · −
atpE · PQ075908.1 · 52,966–53,367 bp · −
atpB · PQ075908.1 · 53,364–54,851 bp · −
psbJ · PQ075908.1 · 64,469–64,591 bp · −
psbL · PQ075908.1 · 64,725–64,841 bp · −
psbF · PQ075908.1 · 64,865–64,984 bp · −
psbE · PQ075908.1 · 64,999–65,250 bp · −
trnW-CCA · PQ075908.1 · 66,662–66,735 bp · −
trnP-UGG · PQ075908.1 · 66,929–67,002 bp · −
rpl20 · PQ075908.1 · 68,800–69,186 bp · −
rps12 · PQ075908.1 · 69,975–70,100 bp · −
rps12 · PQ075908.1 · 97,317–98,107 bp · −
clpP · PQ075908.1 · 70,244–72,176 bp · −
psbN · PQ075908.1 · 74,536–74,667 bp · −
rpoA · PQ075908.1 · 78,038–79,051 bp · −
rps11 · PQ075908.1 · 79,123–79,539 bp · −
rpl36 · PQ075908.1 · 79,641–79,754 bp · −
infA · PQ075908.1 · 79,850–80,083 bp · −
rps8 · PQ075908.1 · 80,203–80,613 bp · −
rpl14 · PQ075908.1 · 80,784–81,152 bp · −
rpl16 · PQ075908.1 · 81,279–82,512 bp · −
rps3 · PQ075908.1 · 82,667–83,329 bp · −
rpl22 · PQ075908.1 · 83,331–83,786 bp · −
rps19 · PQ075908.1 · 83,846–84,124 bp · −
rpl2 · PQ075908.1 · 84,179–85,661 bp · −
rpl23 · PQ075908.1 · 85,680–85,961 bp · −
trnI-CAU · PQ075908.1 · 86,121–86,194 bp · −
trnL-CAA · PQ075908.1 · 93,687–93,767 bp · −
ndhB · PQ075908.1 · 94,310–96,467 bp · −
rps7 · PQ075908.1 · 96,796–97,263 bp · −
trnN-GUU · PQ075908.1 · 108,147–108,218 bp · −
ndhF · PQ075908.1 · 109,295–111,535 bp · −
ndhD · PQ075908.1 · 114,060–115,583 bp · −
psaC · PQ075908.1 · 115,682–115,927 bp · −
ndhE · PQ075908.1 · 116,184–116,489 bp · −
ndhG · PQ075908.1 · 116,720–117,250 bp · −
ndhI · PQ075908.1 · 117,615–118,115 bp · −
ndhA · PQ075908.1 · 118,196–120,288 bp · −
ndhH · PQ075908.1 · 120,290–121,471 bp · −
rps15 · PQ075908.1 · 121,574–121,846 bp · −
ycf1 · PQ075908.1 · 122,107–127,653 bp · −
trnR-ACG · PQ075908.1 · 128,490–128,563 bp · −
rrn5 · PQ075908.1 · 128,798–128,918 bp · −
rrn4.5 · PQ075908.1 · 129,166–129,268 bp · −
rrn23 · PQ075908.1 · 129,367–132,179 bp · −
trnA-UGC · PQ075908.1 · 132,349–133,232 bp · −
trnI-GAU · PQ075908.1 · 133,297–134,317 bp · −
ycf68 · PQ075908.1 · 133,923–134,162 bp · −
rrn16 · PQ075908.1 · 134,616–136,106 bp · −
trnV-GAC · PQ075908.1 · 136,334–136,405 bp · −
ycf15 · PQ075908.1 · 142,659–142,907 bp · −
ycf2 · PQ075908.1 · 142,998–149,807 bp · −
psbK · PQ075908.1 · 7,723–7,908 bp · +
psbI · PQ075908.1 · 8,301–8,411 bp · +
trnG-UCC · PQ075908.1 · 9,289–10,049 bp · +
trnR-UCU · PQ075908.1 · 10,220–10,291 bp · +
trnC-GCA · PQ075908.1 · 28,435–28,505 bp · +
petN · PQ075908.1 · 29,217–29,306 bp · +
trnT-GGU · PQ075908.1 · 31,908–31,979 bp · +
psbD · PQ075908.1 · 33,286–34,347 bp · +
psbC · PQ075908.1 · 34,295–35,716 bp · +
psbZ · PQ075908.1 · 36,364–36,552 bp · +
trnG-GCC · PQ075908.1 · 36,824–36,894 bp · +
trnS-GGA · PQ075908.1 · 45,651–45,737 bp · +
trnL-UAA · PQ075908.1 · 47,719–48,279 bp · +
trnF-GAA · PQ075908.1 · 48,586–48,658 bp · +
trnM-CAU · PQ075908.1 · 52,678–52,750 bp · +
rbcL · PQ075908.1 · 55,601–57,064 bp · +
accD · PQ075908.1 · 57,798–59,264 bp · +
psaI · PQ075908.1 · 59,830–59,940 bp · +
ycf4 · PQ075908.1 · 60,374–60,928 bp · +
cemA · PQ075908.1 · 61,667–62,266 bp · +
petA · PQ075908.1 · 62,473–63,435 bp · +
petL · PQ075908.1 · 66,159–66,254 bp · +
petG · PQ075908.1 · 66,430–66,543 bp · +
psaJ · PQ075908.1 · 67,275–67,409 bp · +
rpl33 · PQ075908.1 · 67,883–68,083 bp · +
rps18 · PQ075908.1 · 68,258–68,563 bp · +
rps12 · PQ075908.1 · 137,983–138,773 bp · +
psbB · PQ075908.1 · 72,643–74,169 bp · +
psbT · PQ075908.1 · 74,361–74,462 bp · +
psbH · PQ075908.1 · 74,771–74,992 bp · +
petB · PQ075908.1 · 75,117–76,485 bp · +
petD · PQ075908.1 · 76,674–77,875 bp · +
ycf2 · PQ075908.1 · 86,283–93,092 bp · +
ycf15 · PQ075908.1 · 93,183–93,431 bp · +
trnV-GAC · PQ075908.1 · 99,685–99,756 bp · +
rrn16 · PQ075908.1 · 99,984–101,474 bp · +
trnI-GAU · PQ075908.1 · 101,773–102,793 bp · +
trnA-UGC · PQ075908.1 · 102,858–103,741 bp · +
rrn23 · PQ075908.1 · 103,911–106,723 bp · +
rrn4.5 · PQ075908.1 · 106,822–106,924 bp · +
rrn5 · PQ075908.1 · 107,172–107,292 bp · +
trnR-ACG · PQ075908.1 · 107,527–107,600 bp · +
rpl32 · PQ075908.1 · 112,056–112,232 bp · +
trnL-UAG · PQ075908.1 · 112,677–112,756 bp · +
ccsA · PQ075908.1 · 112,853–113,827 bp · +
trnN-GUU · PQ075908.1 · 127,872–127,943 bp · +
rps7 · PQ075908.1 · 138,827–139,294 bp · +
ndhB · PQ075908.1 · 139,623–141,780 bp · +
trnL-CAA · PQ075908.1 · 142,323–142,403 bp · +
trnI-CAU · PQ075908.1 · 149,896–149,969 bp · +
rpl23 · PQ075908.1 · 150,129–150,410 bp · +
rpl2 · PQ075908.1 · 150,429–151,911 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria caudifolia var. obliquifolia
ANNOTATED PLASTOME
PQ075908.1
152,006 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38002 76003 114004 152006 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5135 6307 1173 Locate
trnQ-UUG gene − 7327 7398 72 Locate
psbK gene + 7723 7908 186 Locate
psbI gene + 8301 8411 111 Locate
trnS-GCU gene − 8520 8607 88 Locate
trnG-UCC gene + 9289 10049 761 Locate
trnR-UCU gene + 10220 10291 72 Locate
atpA gene − 10388 11911 1524 Locate
atpF gene − 11994 13221 1228 Locate
atpH gene − 13577 13822 246 Locate
atpI gene − 14818 15561 744 Locate
rps2 gene − 15910 16746 837 Locate
rpoC2 gene − 16837 21042 4206 Locate
rpoC1 gene − 21197 24026 2830 Locate
rpoB gene − 24053 27265 3213 Locate
trnC-GCA gene + 28435 28505 71 Locate
petN gene + 29217 29306 90 Locate
psbM gene − 30299 30403 105 Locate
trnD-GUC gene − 30930 31003 74 Locate
trnY-GUA gene − 31117 31200 84 Locate
trnE-UUC gene − 31260 31332 73 Locate
trnT-GGU gene + 31908 31979 72 Locate
psbD gene + 33286 34347 1062 Locate
psbC gene + 34295 35716 1422 Locate
trnS-UGA gene − 35953 36044 92 Locate
psbZ gene + 36364 36552 189 Locate
trnG-GCC gene + 36824 36894 71 Locate
trnfM-CAU gene − 37049 37122 74 Locate
rps14 gene − 37272 37574 303 Locate
psaB gene − 37702 39906 2205 Locate
psaA gene − 39932 42184 2253 Locate
ycf3 gene − 42843 44766 1924 Locate
trnS-GGA gene + 45651 45737 87 Locate
rps4 gene − 46014 46619 606 Locate
trnT-UGU gene − 46961 47033 73 Locate
trnL-UAA gene + 47719 48279 561 Locate
trnF-GAA gene + 48586 48658 73 Locate
ndhJ gene − 49307 49783 477 Locate
ndhK gene − 49891 50568 678 Locate
ndhC gene − 50621 50983 363 Locate
trnV-UAC gene − 51845 52497 653 Locate
trnM-CAU gene + 52678 52750 73 Locate
atpE gene − 52966 53367 402 Locate
atpB gene − 53364 54851 1488 Locate
rbcL gene + 55601 57064 1464 Locate
accD gene + 57798 59264 1467 Locate
psaI gene + 59830 59940 111 Locate
ycf4 gene + 60374 60928 555 Locate
cemA gene + 61667 62266 600 Locate
petA gene + 62473 63435 963 Locate
psbJ gene − 64469 64591 123 Locate
psbL gene − 64725 64841 117 Locate
psbF gene − 64865 64984 120 Locate
psbE gene − 64999 65250 252 Locate
petL gene + 66159 66254 96 Locate
petG gene + 66430 66543 114 Locate
trnW-CCA gene − 66662 66735 74 Locate
trnP-UGG gene − 66929 67002 74 Locate
psaJ gene + 67275 67409 135 Locate
rpl33 gene + 67883 68083 201 Locate
rps18 gene + 68258 68563 306 Locate
rpl20 gene − 68800 69186 387 Locate
rps12 gene − 69975 70100 126 Locate
clpP gene − 70244 72176 1933 Locate
psbB gene + 72643 74169 1527 Locate
psbT gene + 74361 74462 102 Locate
psbN gene − 74536 74667 132 Locate
psbH gene + 74771 74992 222 Locate
petB gene + 75117 76485 1369 Locate
petD gene + 76674 77875 1202 Locate
rpoA gene − 78038 79051 1014 Locate
rps11 gene − 79123 79539 417 Locate
rpl36 gene − 79641 79754 114 Locate
infA gene − 79850 80083 234 Locate
rps8 gene − 80203 80613 411 Locate
rpl14 gene − 80784 81152 369 Locate
rpl16 gene − 81279 82512 1234 Locate
rps3 gene − 82667 83329 663 Locate
rpl22 gene − 83331 83786 456 Locate
rps19 gene − 83846 84124 279 Locate
rpl2 gene − 84179 85661 1483 Locate
rpl23 gene − 85680 85961 282 Locate
trnI-CAU gene − 86121 86194 74 Locate
ycf2 gene + 86283 93092 6810 Locate
ycf15 gene + 93183 93431 249 Locate
trnL-CAA gene − 93687 93767 81 Locate
ndhB gene − 94310 96467 2158 Locate
rps7 gene − 96796 97263 468 Locate
rps12 gene − 97317 98107 791 Locate
trnV-GAC gene + 99685 99756 72 Locate
rrn16 gene + 99984 101474 1491 Locate
trnI-GAU gene + 101773 102793 1021 Locate
trnA-UGC gene + 102858 103741 884 Locate
rrn23 gene + 103911 106723 2813 Locate
rrn4.5 gene + 106822 106924 103 Locate
rrn5 gene + 107172 107292 121 Locate
trnR-ACG gene + 107527 107600 74 Locate
trnN-GUU gene − 108147 108218 72 Locate
ndhF gene − 109295 111535 2241 Locate
rpl32 gene + 112056 112232 177 Locate
trnL-UAG gene + 112677 112756 80 Locate
ccsA gene + 112853 113827 975 Locate
ndhD gene − 114060 115583 1524 Locate
psaC gene − 115682 115927 246 Locate
ndhE gene − 116184 116489 306 Locate
ndhG gene − 116720 117250 531 Locate
ndhI gene − 117615 118115 501 Locate
ndhA gene − 118196 120288 2093 Locate
ndhH gene − 120290 121471 1182 Locate
rps15 gene − 121574 121846 273 Locate
ycf1 gene − 122107 127653 5547 Locate
trnN-GUU gene + 127872 127943 72 Locate
trnR-ACG gene − 128490 128563 74 Locate
rrn5 gene − 128798 128918 121 Locate
rrn4.5 gene − 129166 129268 103 Locate
rrn23 gene − 129367 132179 2813 Locate
trnA-UGC gene − 132349 133232 884 Locate
trnI-GAU gene − 133297 134317 1021 Locate
ycf68 gene − 133923 134162 240 Locate
rrn16 gene − 134616 136106 1491 Locate
trnV-GAC gene − 136334 136405 72 Locate
rps12 gene + 137983 138773 791 Locate
rps7 gene + 138827 139294 468 Locate
ndhB gene + 139623 141780 2158 Locate
trnL-CAA gene + 142323 142403 81 Locate
ycf15 gene − 142659 142907 249 Locate
ycf2 gene − 142998 149807 6810 Locate
trnI-CAU gene + 149896 149969 74 Locate
rpl23 gene + 150129 150410 282 Locate
rpl2 gene + 150429 151911 1483 Locate
Status Available
Accession PQ075908.1
Length 152,006 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources