Scutellaria caudifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075911.1 · 3–76 bp · −
psbA · PQ075911.1 · 239–1,297 bp · −
trnK-UUU · PQ075911.1 · 1,539–4,126 bp · −
matK · PQ075911.1 · 1,834–3,369 bp · −
rps16 · PQ075911.1 · 5,016–6,175 bp · −
trnQ-UUG · PQ075911.1 · 7,278–7,349 bp · −
trnS-GCU · PQ075911.1 · 8,482–8,569 bp · −
atpA · PQ075911.1 · 10,383–11,906 bp · −
atpF · PQ075911.1 · 11,989–13,216 bp · −
atpH · PQ075911.1 · 13,575–13,820 bp · −
atpI · PQ075911.1 · 14,816–15,559 bp · −
rps2 · PQ075911.1 · 15,907–16,617 bp · −
rpoC2 · PQ075911.1 · 16,834–21,039 bp · −
rpoC1 · PQ075911.1 · 21,194–24,023 bp · −
rpoB · PQ075911.1 · 24,050–27,262 bp · −
psbM · PQ075911.1 · 30,340–30,444 bp · −
trnD-GUC · PQ075911.1 · 30,971–31,044 bp · −
trnY-GUA · PQ075911.1 · 31,158–31,241 bp · −
trnE-UUC · PQ075911.1 · 31,301–31,373 bp · −
trnS-UGA · PQ075911.1 · 35,906–35,997 bp · −
trnfM-CAU · PQ075911.1 · 37,015–37,088 bp · −
rps14 · PQ075911.1 · 37,238–37,540 bp · −
psaB · PQ075911.1 · 37,668–39,872 bp · −
psaA · PQ075911.1 · 39,898–42,150 bp · −
ycf3 · PQ075911.1 · 42,839–44,762 bp · −
rps4 · PQ075911.1 · 46,026–46,631 bp · −
trnT-UGU · PQ075911.1 · 46,962–47,034 bp · −
ndhJ · PQ075911.1 · 49,302–49,778 bp · −
ndhK · PQ075911.1 · 49,886–50,563 bp · −
ndhC · PQ075911.1 · 50,616–50,978 bp · −
trnV-UAC · PQ075911.1 · 51,975–52,627 bp · −
atpE · PQ075911.1 · 53,097–53,498 bp · −
atpB · PQ075911.1 · 53,495–54,982 bp · −
psbJ · PQ075911.1 · 64,715–64,837 bp · −
psbL · PQ075911.1 · 64,971–65,192 bp · −
psbF · PQ075911.1 · 65,111–65,230 bp · −
psbE · PQ075911.1 · 65,245–65,496 bp · −
trnW-CCA · PQ075911.1 · 66,895–66,968 bp · −
trnP-UGG · PQ075911.1 · 67,138–67,211 bp · −
rpl20 · PQ075911.1 · 68,997–69,404 bp · −
rps12 · PQ075911.1 · 70,193–70,318 bp · −
rps12 · PQ075911.1 · 97,565–98,355 bp · −
clpP · PQ075911.1 · 70,461–72,392 bp · −
psbN · PQ075911.1 · 74,759–74,890 bp · −
rpoA · PQ075911.1 · 78,271–79,284 bp · −
rps11 · PQ075911.1 · 79,356–79,772 bp · −
rpl36 · PQ075911.1 · 79,874–79,987 bp · −
infA · PQ075911.1 · 80,083–80,316 bp · −
rps8 · PQ075911.1 · 80,435–80,845 bp · −
rpl14 · PQ075911.1 · 81,013–81,381 bp · −
rpl16 · PQ075911.1 · 81,508–82,760 bp · −
rps3 · PQ075911.1 · 82,915–83,577 bp · −
rpl22 · PQ075911.1 · 83,579–84,034 bp · −
rps19 · PQ075911.1 · 84,094–84,372 bp · −
rpl2 · PQ075911.1 · 84,427–85,909 bp · −
rpl23 · PQ075911.1 · 85,928–86,209 bp · −
trnI-CAU · PQ075911.1 · 86,369–86,442 bp · −
trnL-CAA · PQ075911.1 · 93,935–94,015 bp · −
ndhB · PQ075911.1 · 94,558–96,769 bp · −
rps7 · PQ075911.1 · 97,044–97,511 bp · −
trnN-GUU · PQ075911.1 · 108,383–108,454 bp · −
ndhF · PQ075911.1 · 109,531–111,771 bp · −
ndhD · PQ075911.1 · 114,285–115,808 bp · −
psaC · PQ075911.1 · 115,907–116,152 bp · −
ndhE · PQ075911.1 · 116,409–116,714 bp · −
ndhG · PQ075911.1 · 116,945–117,475 bp · −
ndhI · PQ075911.1 · 117,840–118,340 bp · −
ndhA · PQ075911.1 · 118,421–120,519 bp · −
ndhH · PQ075911.1 · 120,521–121,732 bp · −
rps15 · PQ075911.1 · 121,805–122,077 bp · −
ycf1 · PQ075911.1 · 122,343–127,988 bp · −
trnR-ACG · PQ075911.1 · 128,825–128,898 bp · −
rrn5 · PQ075911.1 · 129,133–129,253 bp · −
rrn4.5 · PQ075911.1 · 129,501–129,603 bp · −
rrn23 · PQ075911.1 · 129,702–132,514 bp · −
trnA-UGC · PQ075911.1 · 132,684–133,564 bp · −
trnI-GAU · PQ075911.1 · 133,629–134,640 bp · −
ycf68 · PQ075911.1 · 134,246–134,485 bp · −
rrn16 · PQ075911.1 · 134,939–136,429 bp · −
trnV-GAC · PQ075911.1 · 136,657–136,728 bp · −
ycf15 · PQ075911.1 · 142,982–143,179 bp · −
ycf2 · PQ075911.1 · 143,321–150,130 bp · −
psbK · PQ075911.1 · 7,674–7,859 bp · +
psbI · PQ075911.1 · 8,251–8,361 bp · +
trnG-UCC · PQ075911.1 · 9,271–10,040 bp · +
trnR-UCU · PQ075911.1 · 10,215–10,286 bp · +
trnC-GCA · PQ075911.1 · 28,422–28,492 bp · +
petN · PQ075911.1 · 29,195–29,284 bp · +
trnT-GGU · PQ075911.1 · 31,956–32,027 bp · +
psbD · PQ075911.1 · 33,239–34,300 bp · +
psbC · PQ075911.1 · 34,248–35,669 bp · +
psbZ · PQ075911.1 · 36,318–36,506 bp · +
trnG-GCC · PQ075911.1 · 36,778–36,848 bp · +
trnS-GGA · PQ075911.1 · 45,654–45,740 bp · +
trnL-UAA · PQ075911.1 · 47,719–48,279 bp · +
trnF-GAA · PQ075911.1 · 48,585–48,657 bp · +
trnM-CAU · PQ075911.1 · 52,809–52,881 bp · +
rbcL · PQ075911.1 · 55,734–57,197 bp · +
accD · PQ075911.1 · 57,919–59,385 bp · +
psaI · PQ075911.1 · 60,102–60,212 bp · +
ycf4 · PQ075911.1 · 60,646–61,200 bp · +
cemA · PQ075911.1 · 61,943–62,542 bp · +
petA · PQ075911.1 · 62,749–63,711 bp · +
petL · PQ075911.1 · 66,392–66,487 bp · +
petG · PQ075911.1 · 66,663–66,776 bp · +
psaJ · PQ075911.1 · 67,484–67,618 bp · +
rpl33 · PQ075911.1 · 68,095–68,295 bp · +
rps18 · PQ075911.1 · 68,475–68,780 bp · +
rps12 · PQ075911.1 · 138,306–139,096 bp · +
psbB · PQ075911.1 · 72,866–74,392 bp · +
psbT · PQ075911.1 · 74,584–74,685 bp · +
psbH · PQ075911.1 · 74,994–75,215 bp · +
petB · PQ075911.1 · 75,340–76,718 bp · +
petD · PQ075911.1 · 76,907–78,108 bp · +
ycf2 · PQ075911.1 · 86,531–93,340 bp · +
ycf15 · PQ075911.1 · 93,482–93,679 bp · +
trnV-GAC · PQ075911.1 · 99,933–100,004 bp · +
rrn16 · PQ075911.1 · 100,232–101,722 bp · +
trnI-GAU · PQ075911.1 · 102,021–103,032 bp · +
trnA-UGC · PQ075911.1 · 103,097–103,977 bp · +
rrn23 · PQ075911.1 · 104,147–106,959 bp · +
rrn4.5 · PQ075911.1 · 107,058–107,160 bp · +
rrn5 · PQ075911.1 · 107,408–107,528 bp · +
trnR-ACG · PQ075911.1 · 107,763–107,836 bp · +
rpl32 · PQ075911.1 · 112,293–112,469 bp · +
trnL-UAG · PQ075911.1 · 112,915–112,994 bp · +
ccsA · PQ075911.1 · 113,078–114,052 bp · +
trnN-GUU · PQ075911.1 · 128,207–128,278 bp · +
rps7 · PQ075911.1 · 139,150–139,617 bp · +
ndhB · PQ075911.1 · 139,892–142,103 bp · +
trnL-CAA · PQ075911.1 · 142,646–142,726 bp · +
trnI-CAU · PQ075911.1 · 150,219–150,292 bp · +
rpl23 · PQ075911.1 · 150,452–150,733 bp · +
rpl2 · PQ075911.1 · 150,752–152,234 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria caudifolia
ANNOTATED PLASTOME
PQ075911.1
152,329 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38082 76164 114247 152329 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 239 1297 1059 Locate
trnK-UUU gene − 1539 4126 2588 Locate
matK gene − 1834 3369 1536 Locate
rps16 gene − 5016 6175 1160 Locate
trnQ-UUG gene − 7278 7349 72 Locate
psbK gene + 7674 7859 186 Locate
psbI gene + 8251 8361 111 Locate
trnS-GCU gene − 8482 8569 88 Locate
trnG-UCC gene + 9271 10040 770 Locate
trnR-UCU gene + 10215 10286 72 Locate
atpA gene − 10383 11906 1524 Locate
atpF gene − 11989 13216 1228 Locate
atpH gene − 13575 13820 246 Locate
atpI gene − 14816 15559 744 Locate
rps2 gene − 15907 16617 711 Locate
rpoC2 gene − 16834 21039 4206 Locate
rpoC1 gene − 21194 24023 2830 Locate
rpoB gene − 24050 27262 3213 Locate
trnC-GCA gene + 28422 28492 71 Locate
petN gene + 29195 29284 90 Locate
psbM gene − 30340 30444 105 Locate
trnD-GUC gene − 30971 31044 74 Locate
trnY-GUA gene − 31158 31241 84 Locate
trnE-UUC gene − 31301 31373 73 Locate
trnT-GGU gene + 31956 32027 72 Locate
psbD gene + 33239 34300 1062 Locate
psbC gene + 34248 35669 1422 Locate
trnS-UGA gene − 35906 35997 92 Locate
psbZ gene + 36318 36506 189 Locate
trnG-GCC gene + 36778 36848 71 Locate
trnfM-CAU gene − 37015 37088 74 Locate
rps14 gene − 37238 37540 303 Locate
psaB gene − 37668 39872 2205 Locate
psaA gene − 39898 42150 2253 Locate
ycf3 gene − 42839 44762 1924 Locate
trnS-GGA gene + 45654 45740 87 Locate
rps4 gene − 46026 46631 606 Locate
trnT-UGU gene − 46962 47034 73 Locate
trnL-UAA gene + 47719 48279 561 Locate
trnF-GAA gene + 48585 48657 73 Locate
ndhJ gene − 49302 49778 477 Locate
ndhK gene − 49886 50563 678 Locate
ndhC gene − 50616 50978 363 Locate
trnV-UAC gene − 51975 52627 653 Locate
trnM-CAU gene + 52809 52881 73 Locate
atpE gene − 53097 53498 402 Locate
atpB gene − 53495 54982 1488 Locate
rbcL gene + 55734 57197 1464 Locate
accD gene + 57919 59385 1467 Locate
psaI gene + 60102 60212 111 Locate
ycf4 gene + 60646 61200 555 Locate
cemA gene + 61943 62542 600 Locate
petA gene + 62749 63711 963 Locate
psbJ gene − 64715 64837 123 Locate
psbL gene − 64971 65192 222 Locate
psbF gene − 65111 65230 120 Locate
psbE gene − 65245 65496 252 Locate
petL gene + 66392 66487 96 Locate
petG gene + 66663 66776 114 Locate
trnW-CCA gene − 66895 66968 74 Locate
trnP-UGG gene − 67138 67211 74 Locate
psaJ gene + 67484 67618 135 Locate
rpl33 gene + 68095 68295 201 Locate
rps18 gene + 68475 68780 306 Locate
rpl20 gene − 68997 69404 408 Locate
rps12 gene − 70193 70318 126 Locate
clpP gene − 70461 72392 1932 Locate
psbB gene + 72866 74392 1527 Locate
psbT gene + 74584 74685 102 Locate
psbN gene − 74759 74890 132 Locate
psbH gene + 74994 75215 222 Locate
petB gene + 75340 76718 1379 Locate
petD gene + 76907 78108 1202 Locate
rpoA gene − 78271 79284 1014 Locate
rps11 gene − 79356 79772 417 Locate
rpl36 gene − 79874 79987 114 Locate
infA gene − 80083 80316 234 Locate
rps8 gene − 80435 80845 411 Locate
rpl14 gene − 81013 81381 369 Locate
rpl16 gene − 81508 82760 1253 Locate
rps3 gene − 82915 83577 663 Locate
rpl22 gene − 83579 84034 456 Locate
rps19 gene − 84094 84372 279 Locate
rpl2 gene − 84427 85909 1483 Locate
rpl23 gene − 85928 86209 282 Locate
trnI-CAU gene − 86369 86442 74 Locate
ycf2 gene + 86531 93340 6810 Locate
ycf15 gene + 93482 93679 198 Locate
trnL-CAA gene − 93935 94015 81 Locate
ndhB gene − 94558 96769 2212 Locate
rps7 gene − 97044 97511 468 Locate
rps12 gene − 97565 98355 791 Locate
trnV-GAC gene + 99933 100004 72 Locate
rrn16 gene + 100232 101722 1491 Locate
trnI-GAU gene + 102021 103032 1012 Locate
trnA-UGC gene + 103097 103977 881 Locate
rrn23 gene + 104147 106959 2813 Locate
rrn4.5 gene + 107058 107160 103 Locate
rrn5 gene + 107408 107528 121 Locate
trnR-ACG gene + 107763 107836 74 Locate
trnN-GUU gene − 108383 108454 72 Locate
ndhF gene − 109531 111771 2241 Locate
rpl32 gene + 112293 112469 177 Locate
trnL-UAG gene + 112915 112994 80 Locate
ccsA gene + 113078 114052 975 Locate
ndhD gene − 114285 115808 1524 Locate
psaC gene − 115907 116152 246 Locate
ndhE gene − 116409 116714 306 Locate
ndhG gene − 116945 117475 531 Locate
ndhI gene − 117840 118340 501 Locate
ndhA gene − 118421 120519 2099 Locate
ndhH gene − 120521 121732 1212 Locate
rps15 gene − 121805 122077 273 Locate
ycf1 gene − 122343 127988 5646 Locate
trnN-GUU gene + 128207 128278 72 Locate
trnR-ACG gene − 128825 128898 74 Locate
rrn5 gene − 129133 129253 121 Locate
rrn4.5 gene − 129501 129603 103 Locate
rrn23 gene − 129702 132514 2813 Locate
trnA-UGC gene − 132684 133564 881 Locate
trnI-GAU gene − 133629 134640 1012 Locate
ycf68 gene − 134246 134485 240 Locate
rrn16 gene − 134939 136429 1491 Locate
trnV-GAC gene − 136657 136728 72 Locate
rps12 gene + 138306 139096 791 Locate
rps7 gene + 139150 139617 468 Locate
ndhB gene + 139892 142103 2212 Locate
trnL-CAA gene + 142646 142726 81 Locate
ycf15 gene − 142982 143179 198 Locate
ycf2 gene − 143321 150130 6810 Locate
trnI-CAU gene + 150219 150292 74 Locate
rpl23 gene + 150452 150733 282 Locate
rpl2 gene + 150752 152234 1483 Locate
Status Available
Accession PQ075911.1
Length 152,329 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources