Scutellaria chungtienensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075912.1 · 1–74 bp · −
psbA · PQ075912.1 · 367–1,425 bp · −
trnK-UUU · PQ075912.1 · 1,667–4,240 bp · −
matK · PQ075912.1 · 1,957–3,492 bp · −
rps16 · PQ075912.1 · 5,139–6,318 bp · −
trnQ-UUG · PQ075912.1 · 7,433–7,504 bp · −
trnS-GCU · PQ075912.1 · 8,625–8,712 bp · −
atpA · PQ075912.1 · 10,436–11,959 bp · −
atpF · PQ075912.1 · 12,042–13,276 bp · −
atpH · PQ075912.1 · 13,638–13,883 bp · −
atpI · PQ075912.1 · 14,871–15,614 bp · −
rps2 · PQ075912.1 · 15,961–16,671 bp · −
rpoC2 · PQ075912.1 · 16,885–21,084 bp · −
rpoC1 · PQ075912.1 · 21,239–24,062 bp · −
rpoB · PQ075912.1 · 24,089–27,301 bp · −
psbM · PQ075912.1 · 29,993–30,097 bp · −
trnD-GUC · PQ075912.1 · 30,624–30,697 bp · −
trnY-GUA · PQ075912.1 · 30,816–30,899 bp · −
trnE-UUC · PQ075912.1 · 30,959–31,031 bp · −
trnS-UGA · PQ075912.1 · 35,662–35,753 bp · −
trnfM-CAU · PQ075912.1 · 36,749–36,822 bp · −
rps14 · PQ075912.1 · 36,977–37,279 bp · −
psaB · PQ075912.1 · 37,407–39,611 bp · −
psaA · PQ075912.1 · 39,637–41,889 bp · −
ycf3 · PQ075912.1 · 42,577–44,504 bp · −
rps4 · PQ075912.1 · 45,765–46,370 bp · −
trnT-UGU · PQ075912.1 · 46,720–46,792 bp · −
ndhJ · PQ075912.1 · 49,058–49,534 bp · −
ndhK · PQ075912.1 · 49,643–50,404 bp · −
ndhC · PQ075912.1 · 50,374–50,736 bp · −
trnV-UAC · PQ075912.1 · 51,713–52,365 bp · −
atpE · PQ075912.1 · 52,835–53,236 bp · −
atpB · PQ075912.1 · 53,233–54,729 bp · −
psbJ · PQ075912.1 · 64,457–64,579 bp · −
psbL · PQ075912.1 · 64,713–64,934 bp · −
psbF · PQ075912.1 · 64,853–64,972 bp · −
psbE · PQ075912.1 · 64,987–65,238 bp · −
trnW-CCA · PQ075912.1 · 66,603–66,676 bp · −
trnP-UGG · PQ075912.1 · 66,846–66,919 bp · −
rpl20 · PQ075912.1 · 68,714–69,100 bp · −
rps12 · PQ075912.1 · 69,885–70,010 bp · −
rps12 · PQ075912.1 · 97,199–97,989 bp · −
clpP · PQ075912.1 · 70,152–72,090 bp · −
psbN · PQ075912.1 · 74,435–74,566 bp · −
rpoA · PQ075912.1 · 77,932–78,945 bp · −
rps11 · PQ075912.1 · 79,017–79,433 bp · −
rpl36 · PQ075912.1 · 79,535–79,648 bp · −
infA · PQ075912.1 · 79,743–79,976 bp · −
rps8 · PQ075912.1 · 80,099–80,509 bp · −
rpl14 · PQ075912.1 · 80,666–81,034 bp · −
rpl16 · PQ075912.1 · 81,161–82,400 bp · −
rps3 · PQ075912.1 · 82,556–83,218 bp · −
rpl22 · PQ075912.1 · 83,220–83,675 bp · −
rps19 · PQ075912.1 · 83,735–84,013 bp · −
rpl2 · PQ075912.1 · 84,070–85,551 bp · −
rpl23 · PQ075912.1 · 85,570–85,851 bp · −
trnI-CAU · PQ075912.1 · 86,011–86,084 bp · −
trnL-CAA · PQ075912.1 · 93,569–93,649 bp · −
ndhB · PQ075912.1 · 94,192–96,349 bp · −
rps7 · PQ075912.1 · 96,678–97,145 bp · −
trnN-GUU · PQ075912.1 · 108,033–108,104 bp · −
ndhF · PQ075912.1 · 109,181–111,421 bp · −
ndhD · PQ075912.1 · 113,804–115,306 bp · −
psaC · PQ075912.1 · 115,433–115,678 bp · −
ndhE · PQ075912.1 · 115,934–116,239 bp · −
ndhG · PQ075912.1 · 116,461–116,991 bp · −
ndhI · PQ075912.1 · 117,354–117,854 bp · −
ndhA · PQ075912.1 · 117,935–120,042 bp · −
ndhH · PQ075912.1 · 120,044–121,255 bp · −
rps15 · PQ075912.1 · 121,322–121,741 bp · −
ycf1 · PQ075912.1 · 121,811–127,474 bp · −
trnR-ACG · PQ075912.1 · 128,321–128,394 bp · −
rrn5 · PQ075912.1 · 128,629–128,749 bp · −
rrn4.5 · PQ075912.1 · 128,997–129,099 bp · −
rrn23 · PQ075912.1 · 129,198–132,009 bp · −
trnA-UGC · PQ075912.1 · 132,185–133,071 bp · −
trnI-GAU · PQ075912.1 · 133,135–134,155 bp · −
ycf68 · PQ075912.1 · 133,707–134,000 bp · −
rrn16 · PQ075912.1 · 134,454–135,944 bp · −
trnV-GAC · PQ075912.1 · 136,171–136,242 bp · −
ycf15 · PQ075912.1 · 142,488–142,736 bp · −
ycf2 · PQ075912.1 · 142,827–149,624 bp · −
psbK · PQ075912.1 · 7,829–8,014 bp · +
psbI · PQ075912.1 · 8,402–8,512 bp · +
trnG-UCC · PQ075912.1 · 9,342–10,093 bp · +
trnR-UCU · PQ075912.1 · 10,268–10,339 bp · +
trnC-GCA · PQ075912.1 · 28,463–28,533 bp · +
petN · PQ075912.1 · 28,822–28,911 bp · +
trnT-GGU · PQ075912.1 · 31,607–31,678 bp · +
psbD · PQ075912.1 · 32,995–34,056 bp · +
psbC · PQ075912.1 · 34,004–35,425 bp · +
psbZ · PQ075912.1 · 36,069–36,257 bp · +
trnG-GCC · PQ075912.1 · 36,533–36,603 bp · +
trnS-GGA · PQ075912.1 · 45,397–45,483 bp · +
trnL-UAA · PQ075912.1 · 47,466–48,032 bp · +
trnF-GAA · PQ075912.1 · 48,339–48,411 bp · +
trnM-CAU · PQ075912.1 · 52,554–52,626 bp · +
rbcL · PQ075912.1 · 55,473–56,936 bp · +
accD · PQ075912.1 · 57,653–59,131 bp · +
psaI · PQ075912.1 · 59,844–59,954 bp · +
ycf4 · PQ075912.1 · 60,388–60,942 bp · +
cemA · PQ075912.1 · 61,561–62,283 bp · +
petA · PQ075912.1 · 62,485–63,447 bp · +
petL · PQ075912.1 · 66,100–66,195 bp · +
petG · PQ075912.1 · 66,371–66,484 bp · +
psaJ · PQ075912.1 · 67,190–67,324 bp · +
rpl33 · PQ075912.1 · 67,798–67,998 bp · +
rps18 · PQ075912.1 · 68,173–68,478 bp · +
rps12 · PQ075912.1 · 137,808–138,598 bp · +
psbB · PQ075912.1 · 72,548–74,074 bp · +
psbT · PQ075912.1 · 74,267–74,374 bp · +
psbH · PQ075912.1 · 74,670–74,891 bp · +
petB · PQ075912.1 · 75,016–76,385 bp · +
petD · PQ075912.1 · 76,574–77,769 bp · +
ycf2 · PQ075912.1 · 86,173–92,970 bp · +
ycf15 · PQ075912.1 · 93,061–93,309 bp · +
trnV-GAC · PQ075912.1 · 99,555–99,626 bp · +
rrn16 · PQ075912.1 · 99,853–101,343 bp · +
trnI-GAU · PQ075912.1 · 101,642–102,662 bp · +
trnA-UGC · PQ075912.1 · 102,726–103,612 bp · +
rrn23 · PQ075912.1 · 103,788–106,599 bp · +
rrn4.5 · PQ075912.1 · 106,698–106,800 bp · +
rrn5 · PQ075912.1 · 107,048–107,168 bp · +
trnR-ACG · PQ075912.1 · 107,403–107,476 bp · +
rpl32 · PQ075912.1 · 111,963–112,139 bp · +
trnL-UAG · PQ075912.1 · 112,425–112,504 bp · +
ccsA · PQ075912.1 · 112,539–113,570 bp · +
trnN-GUU · PQ075912.1 · 127,693–127,764 bp · +
rps7 · PQ075912.1 · 138,652–139,119 bp · +
ndhB · PQ075912.1 · 139,448–141,605 bp · +
trnL-CAA · PQ075912.1 · 142,148–142,228 bp · +
trnI-CAU · PQ075912.1 · 149,713–149,786 bp · +
rpl23 · PQ075912.1 · 149,946–150,227 bp · +
rpl2 · PQ075912.1 · 150,246–151,727 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria chungtienensis
ANNOTATED PLASTOME
PQ075912.1
151,840 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37960 75920 113880 151840 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 367 1425 1059 Locate
trnK-UUU gene − 1667 4240 2574 Locate
matK gene − 1957 3492 1536 Locate
rps16 gene − 5139 6318 1180 Locate
trnQ-UUG gene − 7433 7504 72 Locate
psbK gene + 7829 8014 186 Locate
psbI gene + 8402 8512 111 Locate
trnS-GCU gene − 8625 8712 88 Locate
trnG-UCC gene + 9342 10093 752 Locate
trnR-UCU gene + 10268 10339 72 Locate
atpA gene − 10436 11959 1524 Locate
atpF gene − 12042 13276 1235 Locate
atpH gene − 13638 13883 246 Locate
atpI gene − 14871 15614 744 Locate
rps2 gene − 15961 16671 711 Locate
rpoC2 gene − 16885 21084 4200 Locate
rpoC1 gene − 21239 24062 2824 Locate
rpoB gene − 24089 27301 3213 Locate
trnC-GCA gene + 28463 28533 71 Locate
petN gene + 28822 28911 90 Locate
psbM gene − 29993 30097 105 Locate
trnD-GUC gene − 30624 30697 74 Locate
trnY-GUA gene − 30816 30899 84 Locate
trnE-UUC gene − 30959 31031 73 Locate
trnT-GGU gene + 31607 31678 72 Locate
psbD gene + 32995 34056 1062 Locate
psbC gene + 34004 35425 1422 Locate
trnS-UGA gene − 35662 35753 92 Locate
psbZ gene + 36069 36257 189 Locate
trnG-GCC gene + 36533 36603 71 Locate
trnfM-CAU gene − 36749 36822 74 Locate
rps14 gene − 36977 37279 303 Locate
psaB gene − 37407 39611 2205 Locate
psaA gene − 39637 41889 2253 Locate
ycf3 gene − 42577 44504 1928 Locate
trnS-GGA gene + 45397 45483 87 Locate
rps4 gene − 45765 46370 606 Locate
trnT-UGU gene − 46720 46792 73 Locate
trnL-UAA gene + 47466 48032 567 Locate
trnF-GAA gene + 48339 48411 73 Locate
ndhJ gene − 49058 49534 477 Locate
ndhK gene − 49643 50404 762 Locate
ndhC gene − 50374 50736 363 Locate
trnV-UAC gene − 51713 52365 653 Locate
trnM-CAU gene + 52554 52626 73 Locate
atpE gene − 52835 53236 402 Locate
atpB gene − 53233 54729 1497 Locate
rbcL gene + 55473 56936 1464 Locate
accD gene + 57653 59131 1479 Locate
psaI gene + 59844 59954 111 Locate
ycf4 gene + 60388 60942 555 Locate
cemA gene + 61561 62283 723 Locate
petA gene + 62485 63447 963 Locate
psbJ gene − 64457 64579 123 Locate
psbL gene − 64713 64934 222 Locate
psbF gene − 64853 64972 120 Locate
psbE gene − 64987 65238 252 Locate
petL gene + 66100 66195 96 Locate
petG gene + 66371 66484 114 Locate
trnW-CCA gene − 66603 66676 74 Locate
trnP-UGG gene − 66846 66919 74 Locate
psaJ gene + 67190 67324 135 Locate
rpl33 gene + 67798 67998 201 Locate
rps18 gene + 68173 68478 306 Locate
rpl20 gene − 68714 69100 387 Locate
rps12 gene − 69885 70010 126 Locate
clpP gene − 70152 72090 1939 Locate
psbB gene + 72548 74074 1527 Locate
psbT gene + 74267 74374 108 Locate
psbN gene − 74435 74566 132 Locate
psbH gene + 74670 74891 222 Locate
petB gene + 75016 76385 1370 Locate
petD gene + 76574 77769 1196 Locate
rpoA gene − 77932 78945 1014 Locate
rps11 gene − 79017 79433 417 Locate
rpl36 gene − 79535 79648 114 Locate
infA gene − 79743 79976 234 Locate
rps8 gene − 80099 80509 411 Locate
rpl14 gene − 80666 81034 369 Locate
rpl16 gene − 81161 82400 1240 Locate
rps3 gene − 82556 83218 663 Locate
rpl22 gene − 83220 83675 456 Locate
rps19 gene − 83735 84013 279 Locate
rpl2 gene − 84070 85551 1482 Locate
rpl23 gene − 85570 85851 282 Locate
trnI-CAU gene − 86011 86084 74 Locate
ycf2 gene + 86173 92970 6798 Locate
ycf15 gene + 93061 93309 249 Locate
trnL-CAA gene − 93569 93649 81 Locate
ndhB gene − 94192 96349 2158 Locate
rps7 gene − 96678 97145 468 Locate
rps12 gene − 97199 97989 791 Locate
trnV-GAC gene + 99555 99626 72 Locate
rrn16 gene + 99853 101343 1491 Locate
trnI-GAU gene + 101642 102662 1021 Locate
trnA-UGC gene + 102726 103612 887 Locate
rrn23 gene + 103788 106599 2812 Locate
rrn4.5 gene + 106698 106800 103 Locate
rrn5 gene + 107048 107168 121 Locate
trnR-ACG gene + 107403 107476 74 Locate
trnN-GUU gene − 108033 108104 72 Locate
ndhF gene − 109181 111421 2241 Locate
rpl32 gene + 111963 112139 177 Locate
trnL-UAG gene + 112425 112504 80 Locate
ccsA gene + 112539 113570 1032 Locate
ndhD gene − 113804 115306 1503 Locate
psaC gene − 115433 115678 246 Locate
ndhE gene − 115934 116239 306 Locate
ndhG gene − 116461 116991 531 Locate
ndhI gene − 117354 117854 501 Locate
ndhA gene − 117935 120042 2108 Locate
ndhH gene − 120044 121255 1212 Locate
rps15 gene − 121322 121741 420 Locate
ycf1 gene − 121811 127474 5664 Locate
trnN-GUU gene + 127693 127764 72 Locate
trnR-ACG gene − 128321 128394 74 Locate
rrn5 gene − 128629 128749 121 Locate
rrn4.5 gene − 128997 129099 103 Locate
rrn23 gene − 129198 132009 2812 Locate
trnA-UGC gene − 132185 133071 887 Locate
trnI-GAU gene − 133135 134155 1021 Locate
ycf68 gene − 133707 134000 294 Locate
rrn16 gene − 134454 135944 1491 Locate
trnV-GAC gene − 136171 136242 72 Locate
rps12 gene + 137808 138598 791 Locate
rps7 gene + 138652 139119 468 Locate
ndhB gene + 139448 141605 2158 Locate
trnL-CAA gene + 142148 142228 81 Locate
ycf15 gene − 142488 142736 249 Locate
ycf2 gene − 142827 149624 6798 Locate
trnI-CAU gene + 149713 149786 74 Locate
rpl23 gene + 149946 150227 282 Locate
rpl2 gene + 150246 151727 1482 Locate
Status Available
Accession PQ075912.1
Length 151,840 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources