Scutellaria columnae chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059198.1 · 2–75 bp · −
psbA · PQ059198.1 · 391–1,449 bp · −
trnK-UUU · PQ059198.1 · 1,691–4,284 bp · −
matK · PQ059198.1 · 1,980–3,524 bp · −
rps16 · PQ059198.1 · 5,191–6,363 bp · −
trnQ-UUG · PQ059198.1 · 7,471–7,542 bp · −
trnS-GCU · PQ059198.1 · 8,662–8,749 bp · −
atpA · PQ059198.1 · 10,530–12,053 bp · −
atpF · PQ059198.1 · 12,137–13,365 bp · −
atpH · PQ059198.1 · 13,734–13,979 bp · −
atpI · PQ059198.1 · 14,973–15,716 bp · −
rps2 · PQ059198.1 · 16,064–16,774 bp · −
rpoC2 · PQ059198.1 · 16,992–21,191 bp · −
rpoC1 · PQ059198.1 · 21,346–24,164 bp · −
rpoB · PQ059198.1 · 24,191–27,403 bp · −
psbM · PQ059198.1 · 30,483–30,587 bp · −
trnD-GUC · PQ059198.1 · 31,119–31,192 bp · −
trnY-GUA · PQ059198.1 · 31,306–31,389 bp · −
trnE-UUC · PQ059198.1 · 31,449–31,521 bp · −
trnS-UGA · PQ059198.1 · 36,153–36,244 bp · −
trnfM-CAU · PQ059198.1 · 37,240–37,313 bp · −
rps14 · PQ059198.1 · 37,463–37,765 bp · −
psaB · PQ059198.1 · 37,895–40,099 bp · −
psaA · PQ059198.1 · 40,125–42,377 bp · −
ycf3 · PQ059198.1 · 43,077–45,003 bp · −
rps4 · PQ059198.1 · 46,249–46,854 bp · −
trnT-UGU · PQ059198.1 · 47,194–47,266 bp · −
ndhJ · PQ059198.1 · 49,528–50,004 bp · −
ndhK · PQ059198.1 · 50,109–50,786 bp · −
ndhC · PQ059198.1 · 50,839–51,201 bp · −
trnV-UAC · PQ059198.1 · 52,190–52,848 bp · −
atpE · PQ059198.1 · 53,310–53,711 bp · −
atpB · PQ059198.1 · 53,708–55,204 bp · −
psbJ · PQ059198.1 · 64,371–64,493 bp · −
psbL · PQ059198.1 · 64,627–64,743 bp · −
psbF · PQ059198.1 · 64,767–64,886 bp · −
psbE · PQ059198.1 · 64,901–65,152 bp · −
trnW-CCA · PQ059198.1 · 66,569–66,642 bp · −
trnP-UGG · PQ059198.1 · 66,812–66,885 bp · −
rpl20 · PQ059198.1 · 68,687–69,073 bp · −
rps12 · PQ059198.1 · 69,871–69,984 bp · −
rps12 · PQ059198.1 · 97,170–97,960 bp · −
clpP · PQ059198.1 · 70,126–72,061 bp · −
psbN · PQ059198.1 · 74,389–74,520 bp · −
rpoA · PQ059198.1 · 77,891–78,904 bp · −
rps11 · PQ059198.1 · 78,976–79,392 bp · −
rpl36 · PQ059198.1 · 79,494–79,607 bp · −
infA · PQ059198.1 · 79,703–79,936 bp · −
rps8 · PQ059198.1 · 80,059–80,469 bp · −
rpl14 · PQ059198.1 · 80,634–81,002 bp · −
rpl16 · PQ059198.1 · 81,129–82,359 bp · −
rps3 · PQ059198.1 · 82,514–83,176 bp · −
rpl22 · PQ059198.1 · 83,178–83,633 bp · −
rps19 · PQ059198.1 · 83,693–83,971 bp · −
rpl2 · PQ059198.1 · 84,027–85,509 bp · −
rpl23 · PQ059198.1 · 85,528–85,809 bp · −
trnI-CAU · PQ059198.1 · 85,969–86,042 bp · −
trnL-CAA · PQ059198.1 · 93,540–93,620 bp · −
ndhB · PQ059198.1 · 94,163–96,320 bp · −
rps7 · PQ059198.1 · 96,649–97,116 bp · −
trnN-GUU · PQ059198.1 · 108,003–108,074 bp · −
ndhF · PQ059198.1 · 109,151–111,391 bp · −
ndhD · PQ059198.1 · 113,847–115,349 bp · −
psaC · PQ059198.1 · 115,484–115,729 bp · −
ndhE · PQ059198.1 · 115,985–116,290 bp · −
ndhG · PQ059198.1 · 116,504–117,034 bp · −
ndhI · PQ059198.1 · 117,383–117,883 bp · −
ndhA · PQ059198.1 · 117,964–120,065 bp · −
ndhH · PQ059198.1 · 120,067–121,248 bp · −
rps15 · PQ059198.1 · 121,345–121,617 bp · −
ycf1 · PQ059198.1 · 121,886–127,555 bp · −
trnR-ACG · PQ059198.1 · 128,401–128,474 bp · −
rrn5 · PQ059198.1 · 128,709–128,829 bp · −
rrn4.5 · PQ059198.1 · 129,077–129,179 bp · −
rrn23 · PQ059198.1 · 129,278–132,089 bp · −
trnA-UGC · PQ059198.1 · 132,259–133,148 bp · −
trnI-GAU · PQ059198.1 · 133,213–134,231 bp · −
ycf68 · PQ059198.1 · 133,783–134,076 bp · −
rrn16 · PQ059198.1 · 134,530–136,020 bp · −
trnV-GAC · PQ059198.1 · 136,243–136,314 bp · −
ycf15 · PQ059198.1 · 142,569–142,817 bp · −
ycf2 · PQ059198.1 · 142,908–149,717 bp · −
psbK · PQ059198.1 · 7,867–8,052 bp · +
psbI · PQ059198.1 · 8,451–8,561 bp · +
trnG-UCC · PQ059198.1 · 9,442–10,196 bp · +
trnR-UCU · PQ059198.1 · 10,362–10,433 bp · +
trnC-GCA · PQ059198.1 · 28,580–28,650 bp · +
petN · PQ059198.1 · 29,386–29,475 bp · +
trnT-GGU · PQ059198.1 · 32,093–32,164 bp · +
psbD · PQ059198.1 · 33,488–34,549 bp · +
psbC · PQ059198.1 · 34,497–35,918 bp · +
psbZ · PQ059198.1 · 36,564–36,752 bp · +
trnG-GCC · PQ059198.1 · 37,025–37,095 bp · +
trnS-GGA · PQ059198.1 · 45,879–45,965 bp · +
trnL-UAA · PQ059198.1 · 47,934–48,500 bp · +
trnF-GAA · PQ059198.1 · 48,806–48,878 bp · +
trnM-CAU · PQ059198.1 · 53,029–53,101 bp · +
rbcL · PQ059198.1 · 55,951–57,414 bp · +
accD · PQ059198.1 · 58,140–59,630 bp · +
psaI · PQ059198.1 · 59,869–59,979 bp · +
ycf4 · PQ059198.1 · 60,413–60,967 bp · +
cemA · PQ059198.1 · 61,581–62,180 bp · +
petA · PQ059198.1 · 62,387–63,349 bp · +
petL · PQ059198.1 · 66,076–66,171 bp · +
petG · PQ059198.1 · 66,347–66,460 bp · +
psaJ · PQ059198.1 · 67,158–67,292 bp · +
rpl33 · PQ059198.1 · 67,766–67,966 bp · +
rps18 · PQ059198.1 · 68,141–68,446 bp · +
rps12 · PQ059198.1 · 137,888–138,678 bp · +
psbB · PQ059198.1 · 72,515–74,041 bp · +
psbT · PQ059198.1 · 74,222–74,329 bp · +
psbH · PQ059198.1 · 74,624–74,845 bp · +
petB · PQ059198.1 · 74,970–76,338 bp · +
petD · PQ059198.1 · 76,527–77,728 bp · +
ycf2 · PQ059198.1 · 86,131–92,940 bp · +
ycf15 · PQ059198.1 · 93,031–93,279 bp · +
trnV-GAC · PQ059198.1 · 99,534–99,605 bp · +
rrn16 · PQ059198.1 · 99,828–101,318 bp · +
trnI-GAU · PQ059198.1 · 101,617–102,635 bp · +
trnA-UGC · PQ059198.1 · 102,700–103,589 bp · +
rrn23 · PQ059198.1 · 103,759–106,570 bp · +
rrn4.5 · PQ059198.1 · 106,669–106,771 bp · +
rrn5 · PQ059198.1 · 107,019–107,139 bp · +
trnR-ACG · PQ059198.1 · 107,374–107,447 bp · +
rpl32 · PQ059198.1 · 111,905–112,081 bp · +
trnL-UAG · PQ059198.1 · 112,471–112,550 bp · +
ccsA · PQ059198.1 · 112,635–113,609 bp · +
trnN-GUU · PQ059198.1 · 127,774–127,845 bp · +
rps7 · PQ059198.1 · 138,732–139,199 bp · +
ndhB · PQ059198.1 · 139,528–141,685 bp · +
trnL-CAA · PQ059198.1 · 142,228–142,308 bp · +
trnI-CAU · PQ059198.1 · 149,806–149,879 bp · +
rpl23 · PQ059198.1 · 150,039–150,320 bp · +
rpl2 · PQ059198.1 · 150,339–151,821 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria columnae
ANNOTATED PLASTOME
PQ059198.1
151,919 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37980 75960 113939 151919 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 391 1449 1059 Locate
trnK-UUU gene − 1691 4284 2594 Locate
matK gene − 1980 3524 1545 Locate
rps16 gene − 5191 6363 1173 Locate
trnQ-UUG gene − 7471 7542 72 Locate
psbK gene + 7867 8052 186 Locate
psbI gene + 8451 8561 111 Locate
trnS-GCU gene − 8662 8749 88 Locate
trnG-UCC gene + 9442 10196 755 Locate
trnR-UCU gene + 10362 10433 72 Locate
atpA gene − 10530 12053 1524 Locate
atpF gene − 12137 13365 1229 Locate
atpH gene − 13734 13979 246 Locate
atpI gene − 14973 15716 744 Locate
rps2 gene − 16064 16774 711 Locate
rpoC2 gene − 16992 21191 4200 Locate
rpoC1 gene − 21346 24164 2819 Locate
rpoB gene − 24191 27403 3213 Locate
trnC-GCA gene + 28580 28650 71 Locate
petN gene + 29386 29475 90 Locate
psbM gene − 30483 30587 105 Locate
trnD-GUC gene − 31119 31192 74 Locate
trnY-GUA gene − 31306 31389 84 Locate
trnE-UUC gene − 31449 31521 73 Locate
trnT-GGU gene + 32093 32164 72 Locate
psbD gene + 33488 34549 1062 Locate
psbC gene + 34497 35918 1422 Locate
trnS-UGA gene − 36153 36244 92 Locate
psbZ gene + 36564 36752 189 Locate
trnG-GCC gene + 37025 37095 71 Locate
trnfM-CAU gene − 37240 37313 74 Locate
rps14 gene − 37463 37765 303 Locate
psaB gene − 37895 40099 2205 Locate
psaA gene − 40125 42377 2253 Locate
ycf3 gene − 43077 45003 1927 Locate
trnS-GGA gene + 45879 45965 87 Locate
rps4 gene − 46249 46854 606 Locate
trnT-UGU gene − 47194 47266 73 Locate
trnL-UAA gene + 47934 48500 567 Locate
trnF-GAA gene + 48806 48878 73 Locate
ndhJ gene − 49528 50004 477 Locate
ndhK gene − 50109 50786 678 Locate
ndhC gene − 50839 51201 363 Locate
trnV-UAC gene − 52190 52848 659 Locate
trnM-CAU gene + 53029 53101 73 Locate
atpE gene − 53310 53711 402 Locate
atpB gene − 53708 55204 1497 Locate
rbcL gene + 55951 57414 1464 Locate
accD gene + 58140 59630 1491 Locate
psaI gene + 59869 59979 111 Locate
ycf4 gene + 60413 60967 555 Locate
cemA gene + 61581 62180 600 Locate
petA gene + 62387 63349 963 Locate
psbJ gene − 64371 64493 123 Locate
psbL gene − 64627 64743 117 Locate
psbF gene − 64767 64886 120 Locate
psbE gene − 64901 65152 252 Locate
petL gene + 66076 66171 96 Locate
petG gene + 66347 66460 114 Locate
trnW-CCA gene − 66569 66642 74 Locate
trnP-UGG gene − 66812 66885 74 Locate
psaJ gene + 67158 67292 135 Locate
rpl33 gene + 67766 67966 201 Locate
rps18 gene + 68141 68446 306 Locate
rpl20 gene − 68687 69073 387 Locate
rps12 gene − 69871 69984 114 Locate
clpP gene − 70126 72061 1936 Locate
psbB gene + 72515 74041 1527 Locate
psbT gene + 74222 74329 108 Locate
psbN gene − 74389 74520 132 Locate
psbH gene + 74624 74845 222 Locate
petB gene + 74970 76338 1369 Locate
petD gene + 76527 77728 1202 Locate
rpoA gene − 77891 78904 1014 Locate
rps11 gene − 78976 79392 417 Locate
rpl36 gene − 79494 79607 114 Locate
infA gene − 79703 79936 234 Locate
rps8 gene − 80059 80469 411 Locate
rpl14 gene − 80634 81002 369 Locate
rpl16 gene − 81129 82359 1231 Locate
rps3 gene − 82514 83176 663 Locate
rpl22 gene − 83178 83633 456 Locate
rps19 gene − 83693 83971 279 Locate
rpl2 gene − 84027 85509 1483 Locate
rpl23 gene − 85528 85809 282 Locate
trnI-CAU gene − 85969 86042 74 Locate
ycf2 gene + 86131 92940 6810 Locate
ycf15 gene + 93031 93279 249 Locate
trnL-CAA gene − 93540 93620 81 Locate
ndhB gene − 94163 96320 2158 Locate
rps7 gene − 96649 97116 468 Locate
rps12 gene − 97170 97960 791 Locate
trnV-GAC gene + 99534 99605 72 Locate
rrn16 gene + 99828 101318 1491 Locate
trnI-GAU gene + 101617 102635 1019 Locate
trnA-UGC gene + 102700 103589 890 Locate
rrn23 gene + 103759 106570 2812 Locate
rrn4.5 gene + 106669 106771 103 Locate
rrn5 gene + 107019 107139 121 Locate
trnR-ACG gene + 107374 107447 74 Locate
trnN-GUU gene − 108003 108074 72 Locate
ndhF gene − 109151 111391 2241 Locate
rpl32 gene + 111905 112081 177 Locate
trnL-UAG gene + 112471 112550 80 Locate
ccsA gene + 112635 113609 975 Locate
ndhD gene − 113847 115349 1503 Locate
psaC gene − 115484 115729 246 Locate
ndhE gene − 115985 116290 306 Locate
ndhG gene − 116504 117034 531 Locate
ndhI gene − 117383 117883 501 Locate
ndhA gene − 117964 120065 2102 Locate
ndhH gene − 120067 121248 1182 Locate
rps15 gene − 121345 121617 273 Locate
ycf1 gene − 121886 127555 5670 Locate
trnN-GUU gene + 127774 127845 72 Locate
trnR-ACG gene − 128401 128474 74 Locate
rrn5 gene − 128709 128829 121 Locate
rrn4.5 gene − 129077 129179 103 Locate
rrn23 gene − 129278 132089 2812 Locate
trnA-UGC gene − 132259 133148 890 Locate
trnI-GAU gene − 133213 134231 1019 Locate
ycf68 gene − 133783 134076 294 Locate
rrn16 gene − 134530 136020 1491 Locate
trnV-GAC gene − 136243 136314 72 Locate
rps12 gene + 137888 138678 791 Locate
rps7 gene + 138732 139199 468 Locate
ndhB gene + 139528 141685 2158 Locate
trnL-CAA gene + 142228 142308 81 Locate
ycf15 gene − 142569 142817 249 Locate
ycf2 gene − 142908 149717 6810 Locate
trnI-CAU gene + 149806 149879 74 Locate
rpl23 gene + 150039 150320 282 Locate
rpl2 gene + 150339 151821 1483 Locate
Status Available
Accession PQ059198.1
Length 151,919 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources