Scutellaria comosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058241.1 · 4–77 bp · −
psbA · PQ058241.1 · 374–1,432 bp · −
trnK-UUU · PQ058241.1 · 1,674–4,255 bp · −
matK · PQ058241.1 · 1,964–3,490 bp · −
rps16 · PQ058241.1 · 5,157–6,317 bp · −
trnQ-UUG · PQ058241.1 · 7,061–7,132 bp · −
trnS-GCU · PQ058241.1 · 8,263–8,350 bp · −
atpA · PQ058241.1 · 10,152–11,675 bp · −
atpF · PQ058241.1 · 11,757–12,985 bp · −
atpH · PQ058241.1 · 13,346–13,591 bp · −
atpI · PQ058241.1 · 14,579–15,322 bp · −
rps2 · PQ058241.1 · 15,668–16,378 bp · −
rpoC2 · PQ058241.1 · 16,593–20,798 bp · −
rpoC1 · PQ058241.1 · 20,953–23,789 bp · −
rpoB · PQ058241.1 · 23,816–27,028 bp · −
psbM · PQ058241.1 · 30,082–30,186 bp · −
trnD-GUC · PQ058241.1 · 30,712–30,785 bp · −
trnY-GUA · PQ058241.1 · 30,899–30,982 bp · −
trnE-UUC · PQ058241.1 · 31,042–31,114 bp · −
trnS-UGA · PQ058241.1 · 35,733–35,824 bp · −
trnfM-CAU · PQ058241.1 · 36,821–36,894 bp · −
rps14 · PQ058241.1 · 37,049–37,351 bp · −
psaB · PQ058241.1 · 37,480–39,684 bp · −
psaA · PQ058241.1 · 39,710–41,962 bp · −
ycf3 · PQ058241.1 · 42,653–44,575 bp · −
rps4 · PQ058241.1 · 45,820–46,425 bp · −
trnT-UGU · PQ058241.1 · 46,765–46,837 bp · −
ndhJ · PQ058241.1 · 49,104–49,580 bp · −
ndhK · PQ058241.1 · 49,689–50,450 bp · −
ndhC · PQ058241.1 · 50,420–50,782 bp · −
trnV-UAC · PQ058241.1 · 51,768–52,420 bp · −
atpE · PQ058241.1 · 52,875–53,276 bp · −
atpB · PQ058241.1 · 53,273–54,769 bp · −
psbJ · PQ058241.1 · 64,506–64,628 bp · −
psbL · PQ058241.1 · 64,762–64,983 bp · −
psbF · PQ058241.1 · 64,902–65,021 bp · −
psbE · PQ058241.1 · 65,036–65,287 bp · −
trnW-CCA · PQ058241.1 · 66,667–66,740 bp · −
trnP-UGG · PQ058241.1 · 66,910–66,983 bp · −
rpl20 · PQ058241.1 · 68,781–69,167 bp · −
rps12 · PQ058241.1 · 69,962–70,075 bp · −
rps12 · PQ058241.1 · 97,224–98,014 bp · −
clpP · PQ058241.1 · 70,217–72,145 bp · −
psbN · PQ058241.1 · 74,483–74,614 bp · −
rpoA · PQ058241.1 · 78,178–78,978 bp · −
rps11 · PQ058241.1 · 79,050–79,466 bp · −
rpl36 · PQ058241.1 · 79,568–79,681 bp · −
infA · PQ058241.1 · 79,776–80,009 bp · −
rps8 · PQ058241.1 · 80,133–80,543 bp · −
rpl14 · PQ058241.1 · 80,696–81,064 bp · −
rpl16 · PQ058241.1 · 81,191–82,424 bp · −
rps3 · PQ058241.1 · 82,580–83,242 bp · −
rpl22 · PQ058241.1 · 83,244–83,699 bp · −
rps19 · PQ058241.1 · 83,759–84,037 bp · −
rpl2 · PQ058241.1 · 84,092–85,573 bp · −
rpl23 · PQ058241.1 · 85,592–85,873 bp · −
trnI-CAU · PQ058241.1 · 86,033–86,106 bp · −
trnL-CAA · PQ058241.1 · 93,594–93,674 bp · −
ndhB · PQ058241.1 · 94,217–96,374 bp · −
rps7 · PQ058241.1 · 96,703–97,170 bp · −
trnN-GUU · PQ058241.1 · 108,054–108,125 bp · −
ndhF · PQ058241.1 · 109,182–111,443 bp · −
ndhD · PQ058241.1 · 113,807–115,336 bp · −
psaC · PQ058241.1 · 115,437–115,682 bp · −
ndhE · PQ058241.1 · 115,938–116,243 bp · −
ndhG · PQ058241.1 · 116,460–116,990 bp · −
ndhI · PQ058241.1 · 117,357–117,857 bp · −
ndhA · PQ058241.1 · 117,943–120,064 bp · −
ndhH · PQ058241.1 · 120,066–121,277 bp · −
rps15 · PQ058241.1 · 121,344–121,616 bp · −
ycf1 · PQ058241.1 · 121,810–127,446 bp · −
trnR-ACG · PQ058241.1 · 128,285–128,358 bp · −
rrn5 · PQ058241.1 · 128,593–128,713 bp · −
rrn4.5 · PQ058241.1 · 128,961–129,063 bp · −
rrn23 · PQ058241.1 · 129,162–131,973 bp · −
trnA-UGC · PQ058241.1 · 132,143–133,032 bp · −
trnI-GAU · PQ058241.1 · 133,097–134,117 bp · −
ycf68 · PQ058241.1 · 133,669–133,962 bp · −
rrn16 · PQ058241.1 · 134,416–135,906 bp · −
trnV-GAC · PQ058241.1 · 136,133–136,204 bp · −
ycf15 · PQ058241.1 · 142,456–142,653 bp · −
ycf2 · PQ058241.1 · 142,795–149,595 bp · −
psbK · PQ058241.1 · 7,457–7,642 bp · +
psbI · PQ058241.1 · 8,032–8,142 bp · +
trnG-UCC · PQ058241.1 · 9,053–9,809 bp · +
trnR-UCU · PQ058241.1 · 9,984–10,055 bp · +
trnC-GCA · PQ058241.1 · 28,190–28,260 bp · +
petN · PQ058241.1 · 28,976–29,065 bp · +
trnT-GGU · PQ058241.1 · 31,690–31,761 bp · +
psbD · PQ058241.1 · 33,067–34,128 bp · +
psbC · PQ058241.1 · 34,076–35,497 bp · +
psbZ · PQ058241.1 · 36,140–36,328 bp · +
trnG-GCC · PQ058241.1 · 36,605–36,675 bp · +
trnS-GGA · PQ058241.1 · 45,458–45,544 bp · +
trnL-UAA · PQ058241.1 · 47,518–48,076 bp · +
trnF-GAA · PQ058241.1 · 48,383–48,455 bp · +
trnM-CAU · PQ058241.1 · 52,609–52,681 bp · +
rbcL · PQ058241.1 · 55,520–56,983 bp · +
accD · PQ058241.1 · 57,697–59,175 bp · +
psaI · PQ058241.1 · 59,882–59,992 bp · +
ycf4 · PQ058241.1 · 60,426–60,980 bp · +
cemA · PQ058241.1 · 61,729–62,328 bp · +
petA · PQ058241.1 · 62,535–63,497 bp · +
petL · PQ058241.1 · 66,165–66,260 bp · +
petG · PQ058241.1 · 66,436–66,549 bp · +
psaJ · PQ058241.1 · 67,255–67,389 bp · +
rpl33 · PQ058241.1 · 67,865–68,065 bp · +
rps18 · PQ058241.1 · 68,240–68,545 bp · +
rps12 · PQ058241.1 · 137,776–138,566 bp · +
psbB · PQ058241.1 · 72,597–74,123 bp · +
psbT · PQ058241.1 · 74,315–74,422 bp · +
psbH · PQ058241.1 · 74,718–74,939 bp · +
petB · PQ058241.1 · 75,064–76,434 bp · +
petD · PQ058241.1 · 76,617–77,823 bp · +
ycf2 · PQ058241.1 · 86,195–92,995 bp · +
ycf15 · PQ058241.1 · 93,137–93,334 bp · +
trnV-GAC · PQ058241.1 · 99,586–99,657 bp · +
rrn16 · PQ058241.1 · 99,884–101,374 bp · +
trnI-GAU · PQ058241.1 · 101,673–102,693 bp · +
trnA-UGC · PQ058241.1 · 102,758–103,647 bp · +
rrn23 · PQ058241.1 · 103,817–106,628 bp · +
rrn4.5 · PQ058241.1 · 106,727–106,829 bp · +
rrn5 · PQ058241.1 · 107,077–107,197 bp · +
trnR-ACG · PQ058241.1 · 107,432–107,505 bp · +
rpl32 · PQ058241.1 · 111,771–111,947 bp · +
trnL-UAG · PQ058241.1 · 112,395–112,474 bp · +
ccsA · PQ058241.1 · 112,576–113,550 bp · +
trnN-GUU · PQ058241.1 · 127,665–127,736 bp · +
rps7 · PQ058241.1 · 138,620–139,087 bp · +
ndhB · PQ058241.1 · 139,416–141,573 bp · +
trnL-CAA · PQ058241.1 · 142,116–142,196 bp · +
trnI-CAU · PQ058241.1 · 149,684–149,757 bp · +
rpl23 · PQ058241.1 · 149,917–150,198 bp · +
rpl2 · PQ058241.1 · 150,217–151,698 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria comosa
ANNOTATED PLASTOME
PQ058241.1
151,798 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37950 75899 113848 151798 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8032 8142 111 Locate
trnS-GCU gene − 8263 8350 88 Locate
trnG-UCC gene + 9053 9809 757 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11757 12985 1229 Locate
atpH gene − 13346 13591 246 Locate
atpI gene − 14579 15322 744 Locate
rps2 gene − 15668 16378 711 Locate
rpoC2 gene − 16593 20798 4206 Locate
rpoC1 gene − 20953 23789 2837 Locate
rpoB gene − 23816 27028 3213 Locate
trnC-GCA gene + 28190 28260 71 Locate
petN gene + 28976 29065 90 Locate
psbM gene − 30082 30186 105 Locate
trnD-GUC gene − 30712 30785 74 Locate
trnY-GUA gene − 30899 30982 84 Locate
trnE-UUC gene − 31042 31114 73 Locate
trnT-GGU gene + 31690 31761 72 Locate
psbD gene + 33067 34128 1062 Locate
psbC gene + 34076 35497 1422 Locate
trnS-UGA gene − 35733 35824 92 Locate
psbZ gene + 36140 36328 189 Locate
trnG-GCC gene + 36605 36675 71 Locate
trnfM-CAU gene − 36821 36894 74 Locate
rps14 gene − 37049 37351 303 Locate
psaB gene − 37480 39684 2205 Locate
psaA gene − 39710 41962 2253 Locate
ycf3 gene − 42653 44575 1923 Locate
trnS-GGA gene + 45458 45544 87 Locate
rps4 gene − 45820 46425 606 Locate
trnT-UGU gene − 46765 46837 73 Locate
trnL-UAA gene + 47518 48076 559 Locate
trnF-GAA gene + 48383 48455 73 Locate
ndhJ gene − 49104 49580 477 Locate
ndhK gene − 49689 50450 762 Locate
ndhC gene − 50420 50782 363 Locate
trnV-UAC gene − 51768 52420 653 Locate
trnM-CAU gene + 52609 52681 73 Locate
atpE gene − 52875 53276 402 Locate
atpB gene − 53273 54769 1497 Locate
rbcL gene + 55520 56983 1464 Locate
accD gene + 57697 59175 1479 Locate
psaI gene + 59882 59992 111 Locate
ycf4 gene + 60426 60980 555 Locate
cemA gene + 61729 62328 600 Locate
petA gene + 62535 63497 963 Locate
psbJ gene − 64506 64628 123 Locate
psbL gene − 64762 64983 222 Locate
psbF gene − 64902 65021 120 Locate
psbE gene − 65036 65287 252 Locate
petL gene + 66165 66260 96 Locate
petG gene + 66436 66549 114 Locate
trnW-CCA gene − 66667 66740 74 Locate
trnP-UGG gene − 66910 66983 74 Locate
psaJ gene + 67255 67389 135 Locate
rpl33 gene + 67865 68065 201 Locate
rps18 gene + 68240 68545 306 Locate
rpl20 gene − 68781 69167 387 Locate
rps12 gene − 69962 70075 114 Locate
clpP gene − 70217 72145 1929 Locate
psbB gene + 72597 74123 1527 Locate
psbT gene + 74315 74422 108 Locate
psbN gene − 74483 74614 132 Locate
psbH gene + 74718 74939 222 Locate
petB gene + 75064 76434 1371 Locate
petD gene + 76617 77823 1207 Locate
rpoA gene − 78178 78978 801 Locate
rps11 gene − 79050 79466 417 Locate
rpl36 gene − 79568 79681 114 Locate
infA gene − 79776 80009 234 Locate
rps8 gene − 80133 80543 411 Locate
rpl14 gene − 80696 81064 369 Locate
rpl16 gene − 81191 82424 1234 Locate
rps3 gene − 82580 83242 663 Locate
rpl22 gene − 83244 83699 456 Locate
rps19 gene − 83759 84037 279 Locate
rpl2 gene − 84092 85573 1482 Locate
rpl23 gene − 85592 85873 282 Locate
trnI-CAU gene − 86033 86106 74 Locate
ycf2 gene + 86195 92995 6801 Locate
ycf15 gene + 93137 93334 198 Locate
trnL-CAA gene − 93594 93674 81 Locate
ndhB gene − 94217 96374 2158 Locate
rps7 gene − 96703 97170 468 Locate
rps12 gene − 97224 98014 791 Locate
trnV-GAC gene + 99586 99657 72 Locate
rrn16 gene + 99884 101374 1491 Locate
trnI-GAU gene + 101673 102693 1021 Locate
trnA-UGC gene + 102758 103647 890 Locate
rrn23 gene + 103817 106628 2812 Locate
rrn4.5 gene + 106727 106829 103 Locate
rrn5 gene + 107077 107197 121 Locate
trnR-ACG gene + 107432 107505 74 Locate
trnN-GUU gene − 108054 108125 72 Locate
ndhF gene − 109182 111443 2262 Locate
rpl32 gene + 111771 111947 177 Locate
trnL-UAG gene + 112395 112474 80 Locate
ccsA gene + 112576 113550 975 Locate
ndhD gene − 113807 115336 1530 Locate
psaC gene − 115437 115682 246 Locate
ndhE gene − 115938 116243 306 Locate
ndhG gene − 116460 116990 531 Locate
ndhI gene − 117357 117857 501 Locate
ndhA gene − 117943 120064 2122 Locate
ndhH gene − 120066 121277 1212 Locate
rps15 gene − 121344 121616 273 Locate
ycf1 gene − 121810 127446 5637 Locate
trnN-GUU gene + 127665 127736 72 Locate
trnR-ACG gene − 128285 128358 74 Locate
rrn5 gene − 128593 128713 121 Locate
rrn4.5 gene − 128961 129063 103 Locate
rrn23 gene − 129162 131973 2812 Locate
trnA-UGC gene − 132143 133032 890 Locate
trnI-GAU gene − 133097 134117 1021 Locate
ycf68 gene − 133669 133962 294 Locate
rrn16 gene − 134416 135906 1491 Locate
trnV-GAC gene − 136133 136204 72 Locate
rps12 gene + 137776 138566 791 Locate
rps7 gene + 138620 139087 468 Locate
ndhB gene + 139416 141573 2158 Locate
trnL-CAA gene + 142116 142196 81 Locate
ycf15 gene − 142456 142653 198 Locate
ycf2 gene − 142795 149595 6801 Locate
trnI-CAU gene + 149684 149757 74 Locate
rpl23 gene + 149917 150198 282 Locate
rpl2 gene + 150217 151698 1482 Locate
Status Available
Accession PQ058241.1
Length 151,798 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources