Scutellaria costaricana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420973.1 · 3–76 bp · −
psbA · MW420973.1 · 376–1,434 bp · −
trnK-UUU · MW420973.1 · 1,679–4,257 bp · −
matK · MW420973.1 · 1,960–3,504 bp · −
rps16 · MW420973.1 · 5,176–6,303 bp · −
trnQ-UUC · MW420973.1 · 7,435–7,506 bp · −
trnS-GCU · MW420973.1 · 8,631–8,718 bp · −
atpA · MW420973.1 · 10,509–12,032 bp · −
atpF · MW420973.1 · 12,116–13,346 bp · −
atpH · MW420973.1 · 13,706–13,951 bp · −
atpI · MW420973.1 · 14,941–15,684 bp · −
rps2 · MW420973.1 · 16,026–16,736 bp · −
rpoC2 · MW420973.1 · 16,953–21,158 bp · −
rpoC1 · MW420973.1 · 21,304–24,139 bp · −
rpoB · MW420973.1 · 24,166–27,378 bp · −
psbM · MW420973.1 · 30,436–30,549 bp · −
trnD-GUC · MW420973.1 · 31,076–31,149 bp · −
trnY-GUA · MW420973.1 · 31,263–31,346 bp · −
trnE-UUC · MW420973.1 · 31,406–31,478 bp · −
trnS-UCA · MW420973.1 · 36,090–36,182 bp · −
trnfM-CAU · MW420973.1 · 37,176–37,249 bp · −
rps14 · MW420973.1 · 37,399–37,701 bp · −
psaB · MW420973.1 · 37,829–40,033 bp · −
psaA · MW420973.1 · 40,059–42,311 bp · −
ycf3 · MW420973.1 · 43,010–44,932 bp · −
rps4 · MW420973.1 · 46,186–46,791 bp · −
trnT-UGU · MW420973.1 · 47,132–47,204 bp · −
ndhJ · MW420973.1 · 49,468–49,944 bp · −
ndhK · MW420973.1 · 50,088–50,729 bp · −
ndhC · MW420973.1 · 50,783–51,145 bp · −
trnV-UAC · MW420973.1 · 51,601–52,254 bp · −
atpE · MW420973.1 · 52,716–53,117 bp · −
atpB · MW420973.1 · 53,114–54,610 bp · −
pabJ · MW420973.1 · 64,357–64,479 bp · −
psbL · MW420973.1 · 64,613–64,729 bp · −
psbF · MW420973.1 · 64,753–64,872 bp · −
psbE · MW420973.1 · 64,887–65,138 bp · −
trnW-CCA · MW420973.1 · 66,543–66,616 bp · −
trnP-UGG · MW420973.1 · 66,786–66,859 bp · −
rpl20 · MW420973.1 · 68,675–69,061 bp · −
rps12 · MW420973.1 · 69,846–69,971 bp · −
rps12 · MW420973.1 · 97,176–97,966 bp · −
clpP · MW420973.1 · 70,113–72,053 bp · −
psbN · MW420973.1 · 74,397–74,528 bp · −
rpoA · MW420973.1 · 77,900–78,910 bp · −
rps11 · MW420973.1 · 78,982–79,398 bp · −
rpl36 · MW420973.1 · 79,499–79,612 bp · −
infA · MW420973.1 · 79,708–79,941 bp · −
rps8 · MW420973.1 · 80,059–80,469 bp · −
rpl14 · MW420973.1 · 80,639–81,007 bp · −
rpl16 · MW420973.1 · 81,120–82,374 bp · −
rps3 · MW420973.1 · 82,529–83,191 bp · −
rpl22 · MW420973.1 · 83,218–83,649 bp · −
rps19 · MW420973.1 · 83,709–83,987 bp · −
rpl2 · MW420973.1 · 84,042–85,524 bp · −
rpl23 · MW420973.1 · 85,543–85,824 bp · −
trnI-CAU · MW420973.1 · 85,984–86,057 bp · −
trnL-CAA · MW420973.1 · 93,555–93,635 bp · −
ndhB · MW420973.1 · 94,169–96,380 bp · −
rps7 · MW420973.1 · 96,655–97,122 bp · −
ndhF · MW420973.1 · 109,155–111,386 bp · −
ndhD · MW420973.1 · 113,901–115,430 bp · −
psaC · MW420973.1 · 115,530–115,775 bp · −
ndhE · MW420973.1 · 116,014–116,319 bp · −
ndhG · MW420973.1 · 116,541–117,071 bp · −
ndhI · MW420973.1 · 117,434–117,934 bp · −
ndhA · MW420973.1 · 118,015–120,114 bp · −
ndhH · MW420973.1 · 120,116–121,297 bp · −
rps15 · MW420973.1 · 121,386–121,658 bp · −
ycf1 · MW420973.1 · 121,945–127,362 bp · −
trnR-ACG · MW420973.1 · 128,320–128,393 bp · −
rrn5 · MW420973.1 · 128,628–128,748 bp · −
rrn4.5 · MW420973.1 · 128,996–129,098 bp · −
rrn23 · MW420973.1 · 129,197–132,009 bp · −
trnA-UGC · MW420973.1 · 132,179–133,071 bp · −
trnI-GAU · MW420973.1 · 133,137–134,156 bp · −
rrn16 · MW420973.1 · 134,455–135,945 bp · −
trnV-GAC · MW420973.1 · 136,173–136,244 bp · −
ycf15 · MW420973.1 · 142,476–142,673 bp · −
ycf2 · MW420973.1 · 142,815–149,624 bp · −
psbK · MW420973.1 · 7,831–8,016 bp · +
psbI · MW420973.1 · 8,411–8,521 bp · +
trnG-CGA · MW420973.1 · 9,407–10,166 bp · +
trnR-UCU · MW420973.1 · 10,341–10,412 bp · +
trnC-GCA · MW420973.1 · 28,541–28,611 bp · +
petN · MW420973.1 · 29,324–29,413 bp · +
trnT-GGU · MW420973.1 · 32,042–32,113 bp · +
psbD · MW420973.1 · 33,416–34,477 bp · +
psbC · MW420973.1 · 34,425–35,846 bp · +
psbZ · MW420973.1 · 36,502–36,690 bp · +
trnG-GCC · MW420973.1 · 36,962–37,032 bp · +
trnS-GGA · MW420973.1 · 45,815–45,901 bp · +
trnL-UAA · MW420973.1 · 47,885–48,452 bp · +
trnF-GAA · MW420973.1 · 48,757–48,829 bp · +
trnM-CAU · MW420973.1 · 52,435–52,507 bp · +
rbcL · MW420973.1 · 55,383–56,822 bp · +
accD · MW420973.1 · 57,542–59,020 bp · +
psaI · MW420973.1 · 59,732–59,842 bp · +
ycf4 · MW420973.1 · 60,276–60,830 bp · +
cemA · MW420973.1 · 61,511–62,164 bp · +
petA · MW420973.1 · 62,371–63,333 bp · +
petL · MW420973.1 · 66,040–66,135 bp · +
petG · MW420973.1 · 66,311–66,424 bp · +
psbJ · MW420973.1 · 67,133–67,267 bp · +
rpl33 · MW420973.1 · 67,755–68,006 bp · +
rps18 · MW420973.1 · 68,132–68,437 bp · +
rps12 · MW420973.1 · 137,804–138,594 bp · +
psbB · MW420973.1 · 72,511–74,037 bp · +
psbT · MW420973.1 · 74,229–74,336 bp · +
psbH · MW420973.1 · 74,632–74,853 bp · +
petB · MW420973.1 · 74,979–76,347 bp · +
petD · MW420973.1 · 76,536–77,737 bp · +
ycf2 · MW420973.1 · 86,146–92,955 bp · +
ycf15 · MW420973.1 · 93,097–93,294 bp · +
trnV-GAC · MW420973.1 · 99,526–99,597 bp · +
rrn16 · MW420973.1 · 99,825–101,315 bp · +
trnI-GAU · MW420973.1 · 101,614–102,633 bp · +
trnA-UGC · MW420973.1 · 102,699–103,591 bp · +
rrn23 · MW420973.1 · 103,761–106,573 bp · +
rrn4.5 · MW420973.1 · 106,672–106,774 bp · +
rrn5 · MW420973.1 · 107,022–107,142 bp · +
trnR-ACG · MW420973.1 · 107,377–107,450 bp · +
trnN-GUU · MW420973.1 · 108,007–108,078 bp · +
rpl32 · MW420973.1 · 111,905–112,081 bp · +
trnL-UAG · MW420973.1 · 112,518–112,597 bp · +
ccsA · MW420973.1 · 112,702–113,676 bp · +
trnN-GUU · MW420973.1 · 127,692–127,763 bp · +
rps7 · MW420973.1 · 138,648–139,115 bp · +
ndhB · MW420973.1 · 139,390–141,601 bp · +
trnL-CAA · MW420973.1 · 142,135–142,215 bp · +
trnI-CAU · MW420973.1 · 149,713–149,786 bp · +
rpl23 · MW420973.1 · 149,946–150,227 bp · +
rpl2 · MW420973.1 · 150,246–151,728 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria costaricana
ANNOTATED PLASTOME
MW420973.1
151,823 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37956 75912 113867 151823 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 376 1434 1059 Locate
trnK-UUU gene − 1679 4257 2579 Locate
matK gene − 1960 3504 1545 Locate
rps16 gene − 5176 6303 1128 Locate
trnQ-UUC gene − 7435 7506 72 Locate
psbK gene + 7831 8016 186 Locate
psbI gene + 8411 8521 111 Locate
trnS-GCU gene − 8631 8718 88 Locate
trnG-CGA gene + 9407 10166 760 Locate
trnR-UCU gene + 10341 10412 72 Locate
atpA gene − 10509 12032 1524 Locate
atpF gene − 12116 13346 1231 Locate
atpH gene − 13706 13951 246 Locate
atpI gene − 14941 15684 744 Locate
rps2 gene − 16026 16736 711 Locate
rpoC2 gene − 16953 21158 4206 Locate
rpoC1 gene − 21304 24139 2836 Locate
rpoB gene − 24166 27378 3213 Locate
trnC-GCA gene + 28541 28611 71 Locate
petN gene + 29324 29413 90 Locate
psbM gene − 30436 30549 114 Locate
trnD-GUC gene − 31076 31149 74 Locate
trnY-GUA gene − 31263 31346 84 Locate
trnE-UUC gene − 31406 31478 73 Locate
trnT-GGU gene + 32042 32113 72 Locate
psbD gene + 33416 34477 1062 Locate
psbC gene + 34425 35846 1422 Locate
trnS-UCA gene − 36090 36182 93 Locate
psbZ gene + 36502 36690 189 Locate
trnG-GCC gene + 36962 37032 71 Locate
trnfM-CAU gene − 37176 37249 74 Locate
rps14 gene − 37399 37701 303 Locate
psaB gene − 37829 40033 2205 Locate
psaA gene − 40059 42311 2253 Locate
ycf3 gene − 43010 44932 1923 Locate
trnS-GGA gene + 45815 45901 87 Locate
rps4 gene − 46186 46791 606 Locate
trnT-UGU gene − 47132 47204 73 Locate
trnL-UAA gene + 47885 48452 568 Locate
trnF-GAA gene + 48757 48829 73 Locate
ndhJ gene − 49468 49944 477 Locate
ndhK gene − 50088 50729 642 Locate
ndhC gene − 50783 51145 363 Locate
trnV-UAC gene − 51601 52254 654 Locate
trnM-CAU gene + 52435 52507 73 Locate
atpE gene − 52716 53117 402 Locate
atpB gene − 53114 54610 1497 Locate
rbcL gene + 55383 56822 1440 Locate
accD gene + 57542 59020 1479 Locate
psaI gene + 59732 59842 111 Locate
ycf4 gene + 60276 60830 555 Locate
cemA gene + 61511 62164 654 Locate
petA gene + 62371 63333 963 Locate
pabJ gene − 64357 64479 123 Locate
psbL gene − 64613 64729 117 Locate
psbF gene − 64753 64872 120 Locate
psbE gene − 64887 65138 252 Locate
petL gene + 66040 66135 96 Locate
petG gene + 66311 66424 114 Locate
trnW-CCA gene − 66543 66616 74 Locate
trnP-UGG gene − 66786 66859 74 Locate
psbJ gene + 67133 67267 135 Locate
rpl33 gene + 67755 68006 252 Locate
rps18 gene + 68132 68437 306 Locate
rpl20 gene − 68675 69061 387 Locate
rps12 gene − 69846 69971 126 Locate
clpP gene − 70113 72053 1941 Locate
psbB gene + 72511 74037 1527 Locate
psbT gene + 74229 74336 108 Locate
psbN gene − 74397 74528 132 Locate
psbH gene + 74632 74853 222 Locate
petB gene + 74979 76347 1369 Locate
petD gene + 76536 77737 1202 Locate
rpoA gene − 77900 78910 1011 Locate
rps11 gene − 78982 79398 417 Locate
rpl36 gene − 79499 79612 114 Locate
infA gene − 79708 79941 234 Locate
rps8 gene − 80059 80469 411 Locate
rpl14 gene − 80639 81007 369 Locate
rpl16 gene − 81120 82374 1255 Locate
rps3 gene − 82529 83191 663 Locate
rpl22 gene − 83218 83649 432 Locate
rps19 gene − 83709 83987 279 Locate
rpl2 gene − 84042 85524 1483 Locate
rpl23 gene − 85543 85824 282 Locate
trnI-CAU gene − 85984 86057 74 Locate
ycf2 gene + 86146 92955 6810 Locate
ycf15 gene + 93097 93294 198 Locate
trnL-CAA gene − 93555 93635 81 Locate
ndhB gene − 94169 96380 2212 Locate
rps7 gene − 96655 97122 468 Locate
rps12 gene − 97176 97966 791 Locate
trnV-GAC gene + 99526 99597 72 Locate
rrn16 gene + 99825 101315 1491 Locate
trnI-GAU gene + 101614 102633 1020 Locate
trnA-UGC gene + 102699 103591 893 Locate
rrn23 gene + 103761 106573 2813 Locate
rrn4.5 gene + 106672 106774 103 Locate
rrn5 gene + 107022 107142 121 Locate
trnR-ACG gene + 107377 107450 74 Locate
trnN-GUU gene + 108007 108078 72 Locate
ndhF gene − 109155 111386 2232 Locate
rpl32 gene + 111905 112081 177 Locate
trnL-UAG gene + 112518 112597 80 Locate
ccsA gene + 112702 113676 975 Locate
ndhD gene − 113901 115430 1530 Locate
psaC gene − 115530 115775 246 Locate
ndhE gene − 116014 116319 306 Locate
ndhG gene − 116541 117071 531 Locate
ndhI gene − 117434 117934 501 Locate
ndhA gene − 118015 120114 2100 Locate
ndhH gene − 120116 121297 1182 Locate
rps15 gene − 121386 121658 273 Locate
ycf1 gene − 121945 127362 5418 Locate
trnN-GUU gene + 127692 127763 72 Locate
trnR-ACG gene − 128320 128393 74 Locate
rrn5 gene − 128628 128748 121 Locate
rrn4.5 gene − 128996 129098 103 Locate
rrn23 gene − 129197 132009 2813 Locate
trnA-UGC gene − 132179 133071 893 Locate
trnI-GAU gene − 133137 134156 1020 Locate
rrn16 gene − 134455 135945 1491 Locate
trnV-GAC gene − 136173 136244 72 Locate
rps12 gene + 137804 138594 791 Locate
rps7 gene + 138648 139115 468 Locate
ndhB gene + 139390 141601 2212 Locate
trnL-CAA gene + 142135 142215 81 Locate
ycf15 gene − 142476 142673 198 Locate
ycf2 gene − 142815 149624 6810 Locate
trnI-CAU gene + 149713 149786 74 Locate
rpl23 gene + 149946 150227 282 Locate
rpl2 gene + 150246 151728 1483 Locate
Status Available
Accession MW420973.1
Length 151,823 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources