Coordinate-aware organelle record

Scutellaria costaricana chloroplast genome

Available MW420973.1 151,823 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	375	1434	1059
trnK-UUU	gene	translation-rna	−	1678	4257	2579
matK	gene	other	−	1959	3504	1545
rps16	gene	ribosomal-protein	−	5175	6303	1128
trnQ-UUC	gene	translation-rna	−	7434	7506	72
psbK	gene	photosystem-ii	+	7830	8016	186
psbI	gene	photosystem-ii	+	8410	8521	111
trnS-GCU	gene	translation-rna	−	8630	8718	88
trnG-CGA	gene	translation-rna	+	9406	10166	760
trnR-UCU	gene	translation-rna	+	10340	10412	72
atpA	gene	atp-synthase	−	10508	12032	1524
atpF	gene	atp-synthase	−	12115	13346	1231
atpH	gene	atp-synthase	−	13705	13951	246
atpI	gene	atp-synthase	−	14940	15684	744
rps2	gene	ribosomal-protein	−	16025	16736	711
rpoC2	gene	rna-polymerase	−	16952	21158	4206
rpoC1	gene	rna-polymerase	−	21303	24139	2836
rpoB	gene	rna-polymerase	−	24165	27378	3213
trnC-GCA	gene	translation-rna	+	28540	28611	71
petN	gene	cytochrome	+	29323	29413	90
psbM	gene	photosystem-ii	−	30435	30549	114
trnD-GUC	gene	translation-rna	−	31075	31149	74
trnY-GUA	gene	translation-rna	−	31262	31346	84
trnE-UUC	gene	translation-rna	−	31405	31478	73
trnT-GGU	gene	translation-rna	+	32041	32113	72
psbD	gene	photosystem-ii	+	33415	34477	1062
psbC	gene	photosystem-ii	+	34424	35846	1422
trnS-UCA	gene	translation-rna	−	36089	36182	93
psbZ	gene	photosystem-ii	+	36501	36690	189
trnG-GCC	gene	translation-rna	+	36961	37032	71
trnfM-CAU	gene	translation-rna	−	37175	37249	74
rps14	gene	ribosomal-protein	−	37398	37701	303
psaB	gene	photosystem-i	−	37828	40033	2205
psaA	gene	photosystem-i	−	40058	42311	2253
ycf3	gene	other	−	43009	44932	1923
trnS-GGA	gene	translation-rna	+	45814	45901	87
rps4	gene	ribosomal-protein	−	46185	46791	606
trnT-UGU	gene	translation-rna	−	47131	47204	73
trnL-UAA	gene	translation-rna	+	47884	48452	568
trnF-GAA	gene	translation-rna	+	48756	48829	73
ndhJ	gene	nad-dehydrogenase	−	49467	49944	477
ndhK	gene	nad-dehydrogenase	−	50087	50729	642
ndhC	gene	nad-dehydrogenase	−	50782	51145	363
trnV-UAC	gene	translation-rna	−	51600	52254	654
trnM-CAU	gene	translation-rna	+	52434	52507	73
atpE	gene	atp-synthase	−	52715	53117	402
atpB	gene	atp-synthase	−	53113	54610	1497
rbcL	gene	other	+	55382	56822	1440
accD	gene	other	+	57541	59020	1479
psaI	gene	photosystem-i	+	59731	59842	111
ycf4	gene	other	+	60275	60830	555
cemA	gene	other	+	61510	62164	654
petA	gene	cytochrome	+	62370	63333	963
pabJ	gene	other	−	64356	64479	123
psbL	gene	photosystem-ii	−	64612	64729	117
psbF	gene	photosystem-ii	−	64752	64872	120
psbE	gene	photosystem-ii	−	64886	65138	252
petL	gene	cytochrome	+	66039	66135	96
petG	gene	cytochrome	+	66310	66424	114
trnW-CCA	gene	translation-rna	−	66542	66616	74
trnP-UGG	gene	translation-rna	−	66785	66859	74
psbJ	gene	photosystem-ii	+	67132	67267	135
rpl33	gene	ribosomal-protein	+	67754	68006	252
rps18	gene	ribosomal-protein	+	68131	68437	306
rpl20	gene	ribosomal-protein	−	68674	69061	387
rps12	gene	ribosomal-protein	−	69845	97966	28121
rps12	gene	ribosomal-protein	+	69845	138594	68749
clpP	gene	other	−	70112	72053	1941
psbB	gene	photosystem-ii	+	72510	74037	1527
psbT	gene	photosystem-ii	+	74228	74336	108
psbN	gene	photosystem-ii	−	74396	74528	132
psbH	gene	photosystem-ii	+	74631	74853	222
petB	gene	cytochrome	+	74978	76347	1369
petD	gene	cytochrome	+	76535	77737	1202
rpoA	gene	rna-polymerase	−	77899	78910	1011
rps11	gene	ribosomal-protein	−	78981	79398	417
rpl36	gene	ribosomal-protein	−	79498	79612	114
infA	gene	other	−	79707	79941	234
rps8	gene	ribosomal-protein	−	80058	80469	411
rpl14	gene	ribosomal-protein	−	80638	81007	369
rpl16	gene	ribosomal-protein	−	81119	82374	1255
rps3	gene	ribosomal-protein	−	82528	83191	663
rpl22	gene	ribosomal-protein	−	83217	83649	432
rps19	gene	ribosomal-protein	−	83708	83987	279
rpl2	gene	ribosomal-protein	−	84041	85524	1483
rpl23	gene	ribosomal-protein	−	85542	85824	282
trnI-CAU	gene	translation-rna	−	85983	86057	74
ycf2	gene	other	+	86145	92955	6810
ycf15	gene	other	+	93096	93294	198
trnL-CAA	gene	translation-rna	−	93554	93635	81
ndhB	gene	nad-dehydrogenase	−	94168	96380	2212
rps7	gene	ribosomal-protein	−	96654	97122	468
trnV-GAC	gene	translation-rna	+	99525	99597	72
rrn16	gene	ribosomal-rna	+	99824	101315	1491
trnI-GAU	gene	translation-rna	+	101613	102633	1020
trnA-UGC	gene	translation-rna	+	102698	103591	893
rrn23	gene	ribosomal-rna	+	103760	106573	2813
rrn4.5	gene	ribosomal-rna	+	106671	106774	103
rrn5	gene	ribosomal-rna	+	107021	107142	121
trnR-ACG	gene	translation-rna	+	107376	107450	74
trnN-GUU	gene	translation-rna	+	108006	108078	72
ndhF	gene	nad-dehydrogenase	−	109154	111386	2232
rpl32	gene	ribosomal-protein	+	111904	112081	177
trnL-UAG	gene	translation-rna	+	112517	112597	80
ccsA	gene	other	+	112701	113676	975
ndhD	gene	nad-dehydrogenase	−	113900	115430	1530
psaC	gene	photosystem-i	−	115529	115775	246
ndhE	gene	nad-dehydrogenase	−	116013	116319	306
ndhG	gene	nad-dehydrogenase	−	116540	117071	531
ndhI	gene	nad-dehydrogenase	−	117433	117934	501
ndhA	gene	nad-dehydrogenase	−	118014	120114	2100
ndhH	gene	nad-dehydrogenase	−	120115	121297	1182
rps15	gene	ribosomal-protein	−	121385	121658	273
ycf1	gene	other	−	121944	127362	5418
trnN-GUU	gene	translation-rna	+	127691	127763	72
trnR-ACG	gene	translation-rna	−	128319	128393	74
rrn5	gene	ribosomal-rna	−	128627	128748	121
rrn4.5	gene	ribosomal-rna	−	128995	129098	103
rrn23	gene	ribosomal-rna	−	129196	132009	2813
trnA-UGC	gene	translation-rna	−	132178	133071	893
trnI-GAU	gene	translation-rna	−	133136	134156	1020
rrn16	gene	ribosomal-rna	−	134454	135945	1491
trnV-GAC	gene	translation-rna	−	136172	136244	72
rps7	gene	ribosomal-protein	+	138647	139115	468
ndhB	gene	nad-dehydrogenase	+	139389	141601	2212
trnL-CAA	gene	translation-rna	+	142134	142215	81
ycf15	gene	other	−	142475	142673	198
ycf2	gene	other	−	142814	149624	6810
trnI-CAU	gene	translation-rna	+	149712	149786	74
rpl23	gene	ribosomal-protein	+	149945	150227	282
rpl2	gene	ribosomal-protein	+	150245	151728	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMW420973.1DNA · accDMW420973DNA · atpBMW420973DNA · matKMW420973DNA · ndhFMW420973DNA · psbAMW420973DNA · rbcLMW420973DNA · rps12MW420973DNA · ycf1MW420973