Scutellaria cristata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130072.1 · 4–77 bp · −
psbA · PZ130072.1 · 370–1,428 bp · −
trnK-UUU · PZ130072.1 · 1,670–4,252 bp · −
matK · PZ130072.1 · 1,960–3,486 bp · −
rps16 · PZ130072.1 · 5,154–6,312 bp · −
trnQ-UUG · PZ130072.1 · 6,946–7,017 bp · −
trnS-GCU · PZ130072.1 · 8,144–8,231 bp · −
atpA · PZ130072.1 · 10,015–11,538 bp · −
atpF · PZ130072.1 · 11,614–12,843 bp · −
atpH · PZ130072.1 · 13,208–13,453 bp · −
atpI · PZ130072.1 · 14,442–15,185 bp · −
rps2 · PZ130072.1 · 15,524–16,234 bp · −
rpoC2 · PZ130072.1 · 16,449–20,648 bp · −
rpoC1 · PZ130072.1 · 20,803–23,644 bp · −
rpoB · PZ130072.1 · 23,671–26,883 bp · −
psbM · PZ130072.1 · 29,957–30,061 bp · −
trnD-GUC · PZ130072.1 · 30,587–30,660 bp · −
trnY-GUA · PZ130072.1 · 30,774–30,857 bp · −
trnE-UUC · PZ130072.1 · 30,917–30,989 bp · −
trnS-UGA · PZ130072.1 · 35,607–35,698 bp · −
trnfM-CAU · PZ130072.1 · 36,695–36,768 bp · −
rps14 · PZ130072.1 · 36,923–37,225 bp · −
psaB · PZ130072.1 · 37,354–39,558 bp · −
psaA · PZ130072.1 · 39,584–41,836 bp · −
ycf3 · PZ130072.1 · 42,536–44,458 bp · −
rps4 · PZ130072.1 · 45,709–46,314 bp · −
trnT-UGU · PZ130072.1 · 46,656–46,728 bp · −
ndhJ · PZ130072.1 · 48,999–49,475 bp · −
ndhK · PZ130072.1 · 49,584–50,261 bp · −
ndhC · PZ130072.1 · 50,315–50,677 bp · −
trnV-UAC · PZ130072.1 · 51,663–52,315 bp · −
atpE · PZ130072.1 · 52,770–53,171 bp · −
atpB · PZ130072.1 · 53,168–54,664 bp · −
psbJ · PZ130072.1 · 64,366–64,488 bp · −
psbL · PZ130072.1 · 64,622–64,738 bp · −
psbF · PZ130072.1 · 64,762–64,881 bp · −
psbE · PZ130072.1 · 64,896–65,147 bp · −
trnW-CCA · PZ130072.1 · 66,526–66,599 bp · −
trnP-UGG · PZ130072.1 · 66,769–66,842 bp · −
rpl20 · PZ130072.1 · 68,639–69,025 bp · −
rps12 · PZ130072.1 · 69,820–69,933 bp · −
rps12 · PZ130072.1 · 97,081–97,871 bp · −
clpP · PZ130072.1 · 70,075–72,005 bp · −
psbN · PZ130072.1 · 74,340–74,471 bp · −
rpoA · PZ130072.1 · 78,026–78,826 bp · −
rps11 · PZ130072.1 · 78,898–79,314 bp · −
rpl36 · PZ130072.1 · 79,417–79,530 bp · −
infA · PZ130072.1 · 79,625–79,858 bp · −
rps8 · PZ130072.1 · 79,981–80,391 bp · −
rpl14 · PZ130072.1 · 80,544–80,912 bp · −
rpl16 · PZ130072.1 · 81,039–82,272 bp · −
rps3 · PZ130072.1 · 82,428–83,090 bp · −
rpl22 · PZ130072.1 · 83,092–83,547 bp · −
rps19 · PZ130072.1 · 83,607–83,885 bp · −
rpl2 · PZ130072.1 · 83,940–85,421 bp · −
rpl23 · PZ130072.1 · 85,440–85,721 bp · −
trnI-CAU · PZ130072.1 · 85,881–85,954 bp · −
trnL-CAA · PZ130072.1 · 93,451–93,531 bp · −
ndhB · PZ130072.1 · 94,074–96,231 bp · −
rps7 · PZ130072.1 · 96,560–97,027 bp · −
trnN-GUU · PZ130072.1 · 107,907–107,978 bp · −
ndhF · PZ130072.1 · 109,035–111,296 bp · −
ndhD · PZ130072.1 · 113,664–115,193 bp · −
psaC · PZ130072.1 · 115,288–115,533 bp · −
ndhE · PZ130072.1 · 115,785–116,090 bp · −
ndhG · PZ130072.1 · 116,307–116,837 bp · −
ndhI · PZ130072.1 · 117,204–117,704 bp · −
ndhA · PZ130072.1 · 117,785–119,906 bp · −
ndhH · PZ130072.1 · 119,908–121,089 bp · −
rps15 · PZ130072.1 · 121,186–121,458 bp · −
ycf1 · PZ130072.1 · 121,654–127,281 bp · −
trnR-ACG · PZ130072.1 · 128,120–128,193 bp · −
rrn5 · PZ130072.1 · 128,428–128,548 bp · −
rrn4.5 · PZ130072.1 · 128,796–128,898 bp · −
rrn23 · PZ130072.1 · 128,997–131,808 bp · −
trnA-UGC · PZ130072.1 · 131,978–132,863 bp · −
trnI-GAU · PZ130072.1 · 132,928–133,948 bp · −
ycf68 · PZ130072.1 · 133,500–133,793 bp · −
rrn16 · PZ130072.1 · 134,247–135,737 bp · −
trnV-GAC · PZ130072.1 · 135,964–136,035 bp · −
ycf15 · PZ130072.1 · 142,287–142,484 bp · −
ycf2 · PZ130072.1 · 142,626–149,435 bp · −
psbK · PZ130072.1 · 7,342–7,527 bp · +
psbI · PZ130072.1 · 7,915–8,025 bp · +
trnG-UCC · PZ130072.1 · 8,925–9,672 bp · +
trnR-UCU · PZ130072.1 · 9,847–9,918 bp · +
trnC-GCA · PZ130072.1 · 28,043–28,113 bp · +
petN · PZ130072.1 · 28,832–28,921 bp · +
trnT-GGU · PZ130072.1 · 31,565–31,636 bp · +
psbD · PZ130072.1 · 32,941–34,002 bp · +
psbC · PZ130072.1 · 33,950–35,371 bp · +
psbZ · PZ130072.1 · 36,014–36,202 bp · +
trnG-GCC · PZ130072.1 · 36,475–36,545 bp · +
trnS-GGA · PZ130072.1 · 45,347–45,433 bp · +
trnL-UAA · PZ130072.1 · 47,413–47,972 bp · +
trnF-GAA · PZ130072.1 · 48,280–48,352 bp · +
trnM-CAU · PZ130072.1 · 52,504–52,576 bp · +
rbcL · PZ130072.1 · 55,404–56,867 bp · +
accD · PZ130072.1 · 57,583–59,061 bp · +
psaI · PZ130072.1 · 59,766–59,876 bp · +
ycf4 · PZ130072.1 · 60,289–60,843 bp · +
cemA · PZ130072.1 · 61,592–62,191 bp · +
petA · PZ130072.1 · 62,398–63,360 bp · +
petL · PZ130072.1 · 66,023–66,118 bp · +
petG · PZ130072.1 · 66,294–66,407 bp · +
psaJ · PZ130072.1 · 67,114–67,248 bp · +
rpl33 · PZ130072.1 · 67,724–67,924 bp · +
rps18 · PZ130072.1 · 68,099–68,404 bp · +
rps12 · PZ130072.1 · 137,607–138,397 bp · +
psbB · PZ130072.1 · 72,455–73,981 bp · +
psbT · PZ130072.1 · 74,172–74,279 bp · +
psbH · PZ130072.1 · 74,575–74,796 bp · +
petB · PZ130072.1 · 74,921–76,291 bp · +
petD · PZ130072.1 · 76,474–77,671 bp · +
ycf2 · PZ130072.1 · 86,043–92,852 bp · +
ycf15 · PZ130072.1 · 92,994–93,191 bp · +
trnV-GAC · PZ130072.1 · 99,443–99,514 bp · +
rrn16 · PZ130072.1 · 99,741–101,231 bp · +
trnI-GAU · PZ130072.1 · 101,530–102,550 bp · +
trnA-UGC · PZ130072.1 · 102,615–103,500 bp · +
rrn23 · PZ130072.1 · 103,670–106,481 bp · +
rrn4.5 · PZ130072.1 · 106,580–106,682 bp · +
rrn5 · PZ130072.1 · 106,930–107,050 bp · +
trnR-ACG · PZ130072.1 · 107,285–107,358 bp · +
rpl32 · PZ130072.1 · 111,624–111,800 bp · +
trnL-UAG · PZ130072.1 · 112,250–112,329 bp · +
ccsA · PZ130072.1 · 112,432–113,406 bp · +
trnN-GUU · PZ130072.1 · 127,500–127,571 bp · +
rps7 · PZ130072.1 · 138,451–138,918 bp · +
ndhB · PZ130072.1 · 139,247–141,404 bp · +
trnL-CAA · PZ130072.1 · 141,947–142,027 bp · +
trnI-CAU · PZ130072.1 · 149,524–149,597 bp · +
rpl23 · PZ130072.1 · 149,757–150,038 bp · +
rpl2 · PZ130072.1 · 150,057–151,538 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria cristata
ANNOTATED PLASTOME
PZ130072.1
151,638 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37910 75819 113728 151638 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 370 1428 1059 Locate
trnK-UUU gene − 1670 4252 2583 Locate
matK gene − 1960 3486 1527 Locate
rps16 gene − 5154 6312 1159 Locate
trnQ-UUG gene − 6946 7017 72 Locate
psbK gene + 7342 7527 186 Locate
psbI gene + 7915 8025 111 Locate
trnS-GCU gene − 8144 8231 88 Locate
trnG-UCC gene + 8925 9672 748 Locate
trnR-UCU gene + 9847 9918 72 Locate
atpA gene − 10015 11538 1524 Locate
atpF gene − 11614 12843 1230 Locate
atpH gene − 13208 13453 246 Locate
atpI gene − 14442 15185 744 Locate
rps2 gene − 15524 16234 711 Locate
rpoC2 gene − 16449 20648 4200 Locate
rpoC1 gene − 20803 23644 2842 Locate
rpoB gene − 23671 26883 3213 Locate
trnC-GCA gene + 28043 28113 71 Locate
petN gene + 28832 28921 90 Locate
psbM gene − 29957 30061 105 Locate
trnD-GUC gene − 30587 30660 74 Locate
trnY-GUA gene − 30774 30857 84 Locate
trnE-UUC gene − 30917 30989 73 Locate
trnT-GGU gene + 31565 31636 72 Locate
psbD gene + 32941 34002 1062 Locate
psbC gene + 33950 35371 1422 Locate
trnS-UGA gene − 35607 35698 92 Locate
psbZ gene + 36014 36202 189 Locate
trnG-GCC gene + 36475 36545 71 Locate
trnfM-CAU gene − 36695 36768 74 Locate
rps14 gene − 36923 37225 303 Locate
psaB gene − 37354 39558 2205 Locate
psaA gene − 39584 41836 2253 Locate
ycf3 gene − 42536 44458 1923 Locate
trnS-GGA gene + 45347 45433 87 Locate
rps4 gene − 45709 46314 606 Locate
trnT-UGU gene − 46656 46728 73 Locate
trnL-UAA gene + 47413 47972 560 Locate
trnF-GAA gene + 48280 48352 73 Locate
ndhJ gene − 48999 49475 477 Locate
ndhK gene − 49584 50261 678 Locate
ndhC gene − 50315 50677 363 Locate
trnV-UAC gene − 51663 52315 653 Locate
trnM-CAU gene + 52504 52576 73 Locate
atpE gene − 52770 53171 402 Locate
atpB gene − 53168 54664 1497 Locate
rbcL gene + 55404 56867 1464 Locate
accD gene + 57583 59061 1479 Locate
psaI gene + 59766 59876 111 Locate
ycf4 gene + 60289 60843 555 Locate
cemA gene + 61592 62191 600 Locate
petA gene + 62398 63360 963 Locate
psbJ gene − 64366 64488 123 Locate
psbL gene − 64622 64738 117 Locate
psbF gene − 64762 64881 120 Locate
psbE gene − 64896 65147 252 Locate
petL gene + 66023 66118 96 Locate
petG gene + 66294 66407 114 Locate
trnW-CCA gene − 66526 66599 74 Locate
trnP-UGG gene − 66769 66842 74 Locate
psaJ gene + 67114 67248 135 Locate
rpl33 gene + 67724 67924 201 Locate
rps18 gene + 68099 68404 306 Locate
rpl20 gene − 68639 69025 387 Locate
rps12 gene − 69820 69933 114 Locate
clpP gene − 70075 72005 1931 Locate
psbB gene + 72455 73981 1527 Locate
psbT gene + 74172 74279 108 Locate
psbN gene − 74340 74471 132 Locate
psbH gene + 74575 74796 222 Locate
petB gene + 74921 76291 1371 Locate
petD gene + 76474 77671 1198 Locate
rpoA gene − 78026 78826 801 Locate
rps11 gene − 78898 79314 417 Locate
rpl36 gene − 79417 79530 114 Locate
infA gene − 79625 79858 234 Locate
rps8 gene − 79981 80391 411 Locate
rpl14 gene − 80544 80912 369 Locate
rpl16 gene − 81039 82272 1234 Locate
rps3 gene − 82428 83090 663 Locate
rpl22 gene − 83092 83547 456 Locate
rps19 gene − 83607 83885 279 Locate
rpl2 gene − 83940 85421 1482 Locate
rpl23 gene − 85440 85721 282 Locate
trnI-CAU gene − 85881 85954 74 Locate
ycf2 gene + 86043 92852 6810 Locate
ycf15 gene + 92994 93191 198 Locate
trnL-CAA gene − 93451 93531 81 Locate
ndhB gene − 94074 96231 2158 Locate
rps7 gene − 96560 97027 468 Locate
rps12 gene − 97081 97871 791 Locate
trnV-GAC gene + 99443 99514 72 Locate
rrn16 gene + 99741 101231 1491 Locate
trnI-GAU gene + 101530 102550 1021 Locate
trnA-UGC gene + 102615 103500 886 Locate
rrn23 gene + 103670 106481 2812 Locate
rrn4.5 gene + 106580 106682 103 Locate
rrn5 gene + 106930 107050 121 Locate
trnR-ACG gene + 107285 107358 74 Locate
trnN-GUU gene − 107907 107978 72 Locate
ndhF gene − 109035 111296 2262 Locate
rpl32 gene + 111624 111800 177 Locate
trnL-UAG gene + 112250 112329 80 Locate
ccsA gene + 112432 113406 975 Locate
ndhD gene − 113664 115193 1530 Locate
psaC gene − 115288 115533 246 Locate
ndhE gene − 115785 116090 306 Locate
ndhG gene − 116307 116837 531 Locate
ndhI gene − 117204 117704 501 Locate
ndhA gene − 117785 119906 2122 Locate
ndhH gene − 119908 121089 1182 Locate
rps15 gene − 121186 121458 273 Locate
ycf1 gene − 121654 127281 5628 Locate
trnN-GUU gene + 127500 127571 72 Locate
trnR-ACG gene − 128120 128193 74 Locate
rrn5 gene − 128428 128548 121 Locate
rrn4.5 gene − 128796 128898 103 Locate
rrn23 gene − 128997 131808 2812 Locate
trnA-UGC gene − 131978 132863 886 Locate
trnI-GAU gene − 132928 133948 1021 Locate
ycf68 gene − 133500 133793 294 Locate
rrn16 gene − 134247 135737 1491 Locate
trnV-GAC gene − 135964 136035 72 Locate
rps12 gene + 137607 138397 791 Locate
rps7 gene + 138451 138918 468 Locate
ndhB gene + 139247 141404 2158 Locate
trnL-CAA gene + 141947 142027 81 Locate
ycf15 gene − 142287 142484 198 Locate
ycf2 gene − 142626 149435 6810 Locate
trnI-CAU gene + 149524 149597 74 Locate
rpl23 gene + 149757 150038 282 Locate
rpl2 gene + 150057 151538 1482 Locate
Status Available
Accession PZ130072.1
Length 151,638 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources