Scutellaria delavayi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075918.1 · 3–76 bp · −
psbA · PQ075918.1 · 365–1,423 bp · −
trnK-UUU · PQ075918.1 · 1,665–4,253 bp · −
matK · PQ075918.1 · 1,960–3,495 bp · −
rps16 · PQ075918.1 · 5,127–6,299 bp · −
trnQ-UUG · PQ075918.1 · 7,319–7,390 bp · −
trnS-GCU · PQ075918.1 · 8,520–8,607 bp · −
atpA · PQ075918.1 · 10,379–11,902 bp · −
atpF · PQ075918.1 · 11,985–13,212 bp · −
atpH · PQ075918.1 · 13,568–13,813 bp · −
atpI · PQ075918.1 · 14,809–15,552 bp · −
rps2 · PQ075918.1 · 15,901–16,611 bp · −
rpoC2 · PQ075918.1 · 16,828–21,033 bp · −
rpoC1 · PQ075918.1 · 21,188–24,008 bp · −
rpoB · PQ075918.1 · 24,035–27,247 bp · −
psbM · PQ075918.1 · 30,273–30,377 bp · −
trnD-GUC · PQ075918.1 · 30,903–30,976 bp · −
trnY-GUA · PQ075918.1 · 31,095–31,178 bp · −
trnE-UUC · PQ075918.1 · 31,238–31,310 bp · −
trnS-UGA · PQ075918.1 · 35,929–36,020 bp · −
trnfM-CAU · PQ075918.1 · 37,024–37,097 bp · −
rps14 · PQ075918.1 · 37,247–37,549 bp · −
psaB · PQ075918.1 · 37,677–39,881 bp · −
psaA · PQ075918.1 · 39,907–42,159 bp · −
ycf3 · PQ075918.1 · 42,823–44,746 bp · −
rps4 · PQ075918.1 · 46,003–46,608 bp · −
trnT-UGU · PQ075918.1 · 46,949–47,021 bp · −
ndhJ · PQ075918.1 · 49,296–49,772 bp · −
ndhK · PQ075918.1 · 49,880–50,557 bp · −
ndhC · PQ075918.1 · 50,610–50,972 bp · −
trnV-UAC · PQ075918.1 · 51,828–52,480 bp · −
atpE · PQ075918.1 · 52,949–53,350 bp · −
atpB · PQ075918.1 · 53,347–54,834 bp · −
psbJ · PQ075918.1 · 64,436–64,558 bp · −
psbL · PQ075918.1 · 64,692–64,913 bp · −
psbF · PQ075918.1 · 64,832–64,951 bp · −
psbE · PQ075918.1 · 64,966–65,217 bp · −
trnW-CCA · PQ075918.1 · 66,629–66,702 bp · −
trnP-UGG · PQ075918.1 · 66,872–66,945 bp · −
rpl20 · PQ075918.1 · 68,743–69,129 bp · −
rps12 · PQ075918.1 · 69,930–70,043 bp · −
rps12 · PQ075918.1 · 97,264–98,054 bp · −
clpP · PQ075918.1 · 70,186–72,136 bp · −
psbN · PQ075918.1 · 74,496–74,627 bp · −
rpoA · PQ075918.1 · 78,214–79,014 bp · −
rps11 · PQ075918.1 · 79,086–79,502 bp · −
rpl36 · PQ075918.1 · 79,604–79,717 bp · −
infA · PQ075918.1 · 79,813–80,046 bp · −
rps8 · PQ075918.1 · 80,161–80,571 bp · −
rpl14 · PQ075918.1 · 80,741–81,109 bp · −
rpl16 · PQ075918.1 · 81,237–82,470 bp · −
rps3 · PQ075918.1 · 82,625–83,287 bp · −
rpl22 · PQ075918.1 · 83,289–83,744 bp · −
rps19 · PQ075918.1 · 83,804–84,082 bp · −
rpl2 · PQ075918.1 · 84,138–85,620 bp · −
rpl23 · PQ075918.1 · 85,639–85,920 bp · −
trnI-CAU · PQ075918.1 · 86,080–86,153 bp · −
trnL-CAA · PQ075918.1 · 93,634–93,714 bp · −
ndhB · PQ075918.1 · 94,257–96,468 bp · −
rps7 · PQ075918.1 · 96,743–97,210 bp · −
trnN-GUU · PQ075918.1 · 108,085–108,156 bp · −
ndhF · PQ075918.1 · 109,233–111,473 bp · −
ndhD · PQ075918.1 · 113,990–115,492 bp · −
psaC · PQ075918.1 · 115,619–115,864 bp · −
ndhE · PQ075918.1 · 116,121–116,426 bp · −
ndhG · PQ075918.1 · 116,657–117,187 bp · −
ndhI · PQ075918.1 · 117,552–118,052 bp · −
ndhA · PQ075918.1 · 118,133–120,217 bp · −
ndhH · PQ075918.1 · 120,219–121,430 bp · −
rps15 · PQ075918.1 · 121,503–121,775 bp · −
ycf1 · PQ075918.1 · 122,042–127,687 bp · −
trnR-ACG · PQ075918.1 · 128,524–128,597 bp · −
rrn5 · PQ075918.1 · 128,832–128,952 bp · −
rrn4.5 · PQ075918.1 · 129,200–129,302 bp · −
rrn23 · PQ075918.1 · 129,401–132,213 bp · −
trnA-UGC · PQ075918.1 · 132,383–133,266 bp · −
trnI-GAU · PQ075918.1 · 133,331–134,352 bp · −
ycf68 · PQ075918.1 · 133,958–134,197 bp · −
rrn16 · PQ075918.1 · 134,651–136,141 bp · −
trnV-GAC · PQ075918.1 · 136,369–136,440 bp · −
ycf15 · PQ075918.1 · 142,684–142,881 bp · −
ycf2 · PQ075918.1 · 143,023–149,820 bp · −
psbK · PQ075918.1 · 7,715–7,900 bp · +
psbI · PQ075918.1 · 8,292–8,402 bp · +
trnG-UCC · PQ075918.1 · 9,289–10,040 bp · +
trnR-UCU · PQ075918.1 · 10,211–10,282 bp · +
trnC-GCA · PQ075918.1 · 28,417–28,487 bp · +
petN · PQ075918.1 · 29,199–29,288 bp · +
trnT-GGU · PQ075918.1 · 31,886–31,957 bp · +
psbD · PQ075918.1 · 33,263–34,324 bp · +
psbC · PQ075918.1 · 34,272–35,693 bp · +
psbZ · PQ075918.1 · 36,340–36,528 bp · +
trnG-GCC · PQ075918.1 · 36,800–36,870 bp · +
trnS-GGA · PQ075918.1 · 45,631–45,717 bp · +
trnL-UAA · PQ075918.1 · 47,707–48,268 bp · +
trnF-GAA · PQ075918.1 · 48,575–48,647 bp · +
trnM-CAU · PQ075918.1 · 52,661–52,733 bp · +
rbcL · PQ075918.1 · 55,584–57,047 bp · +
accD · PQ075918.1 · 57,774–59,240 bp · +
psaI · PQ075918.1 · 59,798–59,908 bp · +
ycf4 · PQ075918.1 · 60,342–60,896 bp · +
cemA · PQ075918.1 · 61,634–62,233 bp · +
petA · PQ075918.1 · 62,440–63,402 bp · +
petL · PQ075918.1 · 66,126–66,221 bp · +
petG · PQ075918.1 · 66,397–66,510 bp · +
psaJ · PQ075918.1 · 67,218–67,352 bp · +
rpl33 · PQ075918.1 · 67,826–68,026 bp · +
rps18 · PQ075918.1 · 68,201–68,506 bp · +
rps12 · PQ075918.1 · 138,008–138,798 bp · +
psbB · PQ075918.1 · 72,603–74,129 bp · +
psbT · PQ075918.1 · 74,321–74,422 bp · +
psbH · PQ075918.1 · 74,731–74,952 bp · +
petB · PQ075918.1 · 75,077–76,445 bp · +
petD · PQ075918.1 · 76,634–77,835 bp · +
ycf2 · PQ075918.1 · 86,242–93,039 bp · +
ycf15 · PQ075918.1 · 93,181–93,378 bp · +
trnV-GAC · PQ075918.1 · 99,622–99,693 bp · +
rrn16 · PQ075918.1 · 99,921–101,411 bp · +
trnI-GAU · PQ075918.1 · 101,710–102,731 bp · +
trnA-UGC · PQ075918.1 · 102,796–103,679 bp · +
rrn23 · PQ075918.1 · 103,849–106,661 bp · +
rrn4.5 · PQ075918.1 · 106,760–106,862 bp · +
rrn5 · PQ075918.1 · 107,110–107,230 bp · +
trnR-ACG · PQ075918.1 · 107,465–107,538 bp · +
rpl32 · PQ075918.1 · 111,986–112,162 bp · +
trnL-UAG · PQ075918.1 · 112,607–112,686 bp · +
ccsA · PQ075918.1 · 112,783–113,757 bp · +
trnN-GUU · PQ075918.1 · 127,906–127,977 bp · +
rps7 · PQ075918.1 · 138,852–139,319 bp · +
ndhB · PQ075918.1 · 139,594–141,805 bp · +
trnL-CAA · PQ075918.1 · 142,348–142,428 bp · +
trnI-CAU · PQ075918.1 · 149,909–149,982 bp · +
rpl23 · PQ075918.1 · 150,142–150,423 bp · +
rpl2 · PQ075918.1 · 150,442–151,924 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria delavayi
ANNOTATED PLASTOME
PQ075918.1
152,020 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38005 76010 114015 152020 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5127 6299 1173 Locate
trnQ-UUG gene − 7319 7390 72 Locate
psbK gene + 7715 7900 186 Locate
psbI gene + 8292 8402 111 Locate
trnS-GCU gene − 8520 8607 88 Locate
trnG-UCC gene + 9289 10040 752 Locate
trnR-UCU gene + 10211 10282 72 Locate
atpA gene − 10379 11902 1524 Locate
atpF gene − 11985 13212 1228 Locate
atpH gene − 13568 13813 246 Locate
atpI gene − 14809 15552 744 Locate
rps2 gene − 15901 16611 711 Locate
rpoC2 gene − 16828 21033 4206 Locate
rpoC1 gene − 21188 24008 2821 Locate
rpoB gene − 24035 27247 3213 Locate
trnC-GCA gene + 28417 28487 71 Locate
petN gene + 29199 29288 90 Locate
psbM gene − 30273 30377 105 Locate
trnD-GUC gene − 30903 30976 74 Locate
trnY-GUA gene − 31095 31178 84 Locate
trnE-UUC gene − 31238 31310 73 Locate
trnT-GGU gene + 31886 31957 72 Locate
psbD gene + 33263 34324 1062 Locate
psbC gene + 34272 35693 1422 Locate
trnS-UGA gene − 35929 36020 92 Locate
psbZ gene + 36340 36528 189 Locate
trnG-GCC gene + 36800 36870 71 Locate
trnfM-CAU gene − 37024 37097 74 Locate
rps14 gene − 37247 37549 303 Locate
psaB gene − 37677 39881 2205 Locate
psaA gene − 39907 42159 2253 Locate
ycf3 gene − 42823 44746 1924 Locate
trnS-GGA gene + 45631 45717 87 Locate
rps4 gene − 46003 46608 606 Locate
trnT-UGU gene − 46949 47021 73 Locate
trnL-UAA gene + 47707 48268 562 Locate
trnF-GAA gene + 48575 48647 73 Locate
ndhJ gene − 49296 49772 477 Locate
ndhK gene − 49880 50557 678 Locate
ndhC gene − 50610 50972 363 Locate
trnV-UAC gene − 51828 52480 653 Locate
trnM-CAU gene + 52661 52733 73 Locate
atpE gene − 52949 53350 402 Locate
atpB gene − 53347 54834 1488 Locate
rbcL gene + 55584 57047 1464 Locate
accD gene + 57774 59240 1467 Locate
psaI gene + 59798 59908 111 Locate
ycf4 gene + 60342 60896 555 Locate
cemA gene + 61634 62233 600 Locate
petA gene + 62440 63402 963 Locate
psbJ gene − 64436 64558 123 Locate
psbL gene − 64692 64913 222 Locate
psbF gene − 64832 64951 120 Locate
psbE gene − 64966 65217 252 Locate
petL gene + 66126 66221 96 Locate
petG gene + 66397 66510 114 Locate
trnW-CCA gene − 66629 66702 74 Locate
trnP-UGG gene − 66872 66945 74 Locate
psaJ gene + 67218 67352 135 Locate
rpl33 gene + 67826 68026 201 Locate
rps18 gene + 68201 68506 306 Locate
rpl20 gene − 68743 69129 387 Locate
rps12 gene − 69930 70043 114 Locate
clpP gene − 70186 72136 1951 Locate
psbB gene + 72603 74129 1527 Locate
psbT gene + 74321 74422 102 Locate
psbN gene − 74496 74627 132 Locate
psbH gene + 74731 74952 222 Locate
petB gene + 75077 76445 1369 Locate
petD gene + 76634 77835 1202 Locate
rpoA gene − 78214 79014 801 Locate
rps11 gene − 79086 79502 417 Locate
rpl36 gene − 79604 79717 114 Locate
infA gene − 79813 80046 234 Locate
rps8 gene − 80161 80571 411 Locate
rpl14 gene − 80741 81109 369 Locate
rpl16 gene − 81237 82470 1234 Locate
rps3 gene − 82625 83287 663 Locate
rpl22 gene − 83289 83744 456 Locate
rps19 gene − 83804 84082 279 Locate
rpl2 gene − 84138 85620 1483 Locate
rpl23 gene − 85639 85920 282 Locate
trnI-CAU gene − 86080 86153 74 Locate
ycf2 gene + 86242 93039 6798 Locate
ycf15 gene + 93181 93378 198 Locate
trnL-CAA gene − 93634 93714 81 Locate
ndhB gene − 94257 96468 2212 Locate
rps7 gene − 96743 97210 468 Locate
rps12 gene − 97264 98054 791 Locate
trnV-GAC gene + 99622 99693 72 Locate
rrn16 gene + 99921 101411 1491 Locate
trnI-GAU gene + 101710 102731 1022 Locate
trnA-UGC gene + 102796 103679 884 Locate
rrn23 gene + 103849 106661 2813 Locate
rrn4.5 gene + 106760 106862 103 Locate
rrn5 gene + 107110 107230 121 Locate
trnR-ACG gene + 107465 107538 74 Locate
trnN-GUU gene − 108085 108156 72 Locate
ndhF gene − 109233 111473 2241 Locate
rpl32 gene + 111986 112162 177 Locate
trnL-UAG gene + 112607 112686 80 Locate
ccsA gene + 112783 113757 975 Locate
ndhD gene − 113990 115492 1503 Locate
psaC gene − 115619 115864 246 Locate
ndhE gene − 116121 116426 306 Locate
ndhG gene − 116657 117187 531 Locate
ndhI gene − 117552 118052 501 Locate
ndhA gene − 118133 120217 2085 Locate
ndhH gene − 120219 121430 1212 Locate
rps15 gene − 121503 121775 273 Locate
ycf1 gene − 122042 127687 5646 Locate
trnN-GUU gene + 127906 127977 72 Locate
trnR-ACG gene − 128524 128597 74 Locate
rrn5 gene − 128832 128952 121 Locate
rrn4.5 gene − 129200 129302 103 Locate
rrn23 gene − 129401 132213 2813 Locate
trnA-UGC gene − 132383 133266 884 Locate
trnI-GAU gene − 133331 134352 1022 Locate
ycf68 gene − 133958 134197 240 Locate
rrn16 gene − 134651 136141 1491 Locate
trnV-GAC gene − 136369 136440 72 Locate
rps12 gene + 138008 138798 791 Locate
rps7 gene + 138852 139319 468 Locate
ndhB gene + 139594 141805 2212 Locate
trnL-CAA gene + 142348 142428 81 Locate
ycf15 gene − 142684 142881 198 Locate
ycf2 gene − 143023 149820 6798 Locate
trnI-CAU gene + 149909 149982 74 Locate
rpl23 gene + 150142 150423 282 Locate
rpl2 gene + 150442 151924 1483 Locate
Status Available
Accession PQ075918.1
Length 152,020 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources