Scutellaria dependens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420952.1 · 3–76 bp · −
psbA · MW420952.1 · 381–1,439 bp · −
trnK-UUU · MW420952.1 · 1,676–4,255 bp · −
matK · MW420952.1 · 1,967–3,502 bp · −
rps16 · MW420952.1 · 5,159–6,327 bp · −
trnQ-UUC · MW420952.1 · 7,456–7,527 bp · −
trnS-GCU · MW420952.1 · 8,657–8,744 bp · −
atpA · MW420952.1 · 10,536–12,059 bp · −
atpF · MW420952.1 · 12,133–13,360 bp · −
atpH · MW420952.1 · 13,736–13,981 bp · −
atpI · MW420952.1 · 14,974–15,717 bp · −
rps2 · MW420952.1 · 16,065–16,775 bp · −
rpoC2 · MW420952.1 · 16,992–21,197 bp · −
rpoC1 · MW420952.1 · 21,352–24,186 bp · −
rpoB · MW420952.1 · 24,213–27,425 bp · −
psbM · MW420952.1 · 30,464–30,568 bp · −
trnD-GUC · MW420952.1 · 31,094–31,167 bp · −
trnY-GUA · MW420952.1 · 31,281–31,364 bp · −
trnE-UUC · MW420952.1 · 31,424–31,496 bp · −
trnS-UCA · MW420952.1 · 36,127–36,219 bp · −
trnfM-CAU · MW420952.1 · 37,204–37,277 bp · −
rps14 · MW420952.1 · 37,427–37,729 bp · −
psaB · MW420952.1 · 37,857–40,061 bp · −
psaA · MW420952.1 · 40,087–42,339 bp · −
ycf3 · MW420952.1 · 43,013–44,935 bp · −
rps4 · MW420952.1 · 46,106–46,711 bp · −
trnT-UGU · MW420952.1 · 47,051–47,123 bp · −
ndhJ · MW420952.1 · 49,406–49,882 bp · −
ndhK · MW420952.1 · 49,990–50,667 bp · −
ndhC · MW420952.1 · 50,720–51,082 bp · −
trnV-UAC · MW420952.1 · 52,079–52,731 bp · −
atpE · MW420952.1 · 53,194–53,595 bp · −
atpB · MW420952.1 · 53,592–55,079 bp · −
pabJ · MW420952.1 · 64,839–64,961 bp · −
psbL · MW420952.1 · 65,095–65,211 bp · −
psbF · MW420952.1 · 65,235–65,354 bp · −
psbE · MW420952.1 · 65,369–65,620 bp · −
trnW-CCA · MW420952.1 · 67,026–67,099 bp · −
trnP-UGG · MW420952.1 · 67,269–67,342 bp · −
rpl20 · MW420952.1 · 69,139–69,525 bp · −
rps12 · MW420952.1 · 70,315–70,440 bp · −
rps12 · MW420952.1 · 97,641–98,431 bp · −
clpP · MW420952.1 · 70,583–72,515 bp · −
psbN · MW420952.1 · 74,870–75,001 bp · −
rpoA · MW420952.1 · 78,364–79,377 bp · −
rps11 · MW420952.1 · 79,449–79,865 bp · −
rpl36 · MW420952.1 · 79,967–80,080 bp · −
infA · MW420952.1 · 80,176–80,409 bp · −
rps8 · MW420952.1 · 80,529–80,939 bp · −
rpl14 · MW420952.1 · 81,098–81,466 bp · −
rpl16 · MW420952.1 · 81,593–82,836 bp · −
rps3 · MW420952.1 · 82,991–83,653 bp · −
rpl22 · MW420952.1 · 83,655–84,110 bp · −
rps19 · MW420952.1 · 84,170–84,448 bp · −
rpl2 · MW420952.1 · 84,503–85,985 bp · −
rpl23 · MW420952.1 · 86,004–86,285 bp · −
trnI-CAU · MW420952.1 · 86,445–86,518 bp · −
trnL-CAA · MW420952.1 · 94,011–94,091 bp · −
ndhB · MW420952.1 · 94,634–96,845 bp · −
rps7 · MW420952.1 · 97,120–97,587 bp · −
ndhF · MW420952.1 · 109,620–111,860 bp · −
ndhD · MW420952.1 · 114,370–115,899 bp · −
psaC · MW420952.1 · 115,991–116,236 bp · −
ndhE · MW420952.1 · 116,493–116,798 bp · −
ndhG · MW420952.1 · 117,024–117,554 bp · −
ndhI · MW420952.1 · 117,920–118,420 bp · −
ndhA · MW420952.1 · 118,501–120,600 bp · −
ndhH · MW420952.1 · 120,602–121,783 bp · −
rps15 · MW420952.1 · 121,886–122,158 bp · −
ycf1 · MW420952.1 · 122,426–127,969 bp · −
trnN-GUU · MW420952.1 · 128,299–128,370 bp · −
trnR-ACG · MW420952.1 · 128,917–128,990 bp · −
rrn5 · MW420952.1 · 129,225–129,345 bp · −
rrn4.5 · MW420952.1 · 129,592–129,694 bp · −
rrn23 · MW420952.1 · 129,793–132,606 bp · −
trnA-UGC · MW420952.1 · 132,776–133,664 bp · −
trnI-GAU · MW420952.1 · 133,730–134,749 bp · −
rrn16 · MW420952.1 · 135,048–136,535 bp · −
trnV-GAC · MW420952.1 · 136,762–136,833 bp · −
ycf15 · MW420952.1 · 143,087–143,284 bp · −
ycf2 · MW420952.1 · 143,426–150,235 bp · −
psbK · MW420952.1 · 7,852–8,037 bp · +
psbI · MW420952.1 · 8,429–8,539 bp · +
trnG-CGA · MW420952.1 · 9,433–10,193 bp · +
trnR-UCU · MW420952.1 · 10,368–10,439 bp · +
trnC-GCA · MW420952.1 · 28,588–28,658 bp · +
petN · MW420952.1 · 29,361–29,450 bp · +
trnT-GGU · MW420952.1 · 32,079–32,150 bp · +
psbD · MW420952.1 · 33,462–34,523 bp · +
psbC · MW420952.1 · 34,471–35,892 bp · +
psbZ · MW420952.1 · 36,530–36,718 bp · +
trnG-GCC · MW420952.1 · 36,990–37,060 bp · +
trnS-GGA · MW420952.1 · 45,734–45,820 bp · +
trnL-UAA · MW420952.1 · 47,810–48,379 bp · +
trnF-GAA · MW420952.1 · 48,685–48,757 bp · +
trnM-CAU · MW420952.1 · 52,912–52,984 bp · +
rbcL · MW420952.1 · 55,851–57,293 bp · +
accD · MW420952.1 · 58,004–59,470 bp · +
psaI · MW420952.1 · 60,202–60,312 bp · +
ycf4 · MW420952.1 · 60,746–61,300 bp · +
cemA · MW420952.1 · 61,989–62,648 bp · +
petA · MW420952.1 · 62,855–63,817 bp · +
petL · MW420952.1 · 66,524–66,619 bp · +
petG · MW420952.1 · 66,794–66,907 bp · +
psbJ · MW420952.1 · 67,614–67,748 bp · +
rpl33 · MW420952.1 · 68,220–68,420 bp · +
rps18 · MW420952.1 · 68,595–68,900 bp · +
rps12 · MW420952.1 · 138,411–139,201 bp · +
psbB · MW420952.1 · 72,976–74,502 bp · +
psbT · MW420952.1 · 74,695–74,796 bp · +
psbH · MW420952.1 · 75,105–75,326 bp · +
petB · MW420952.1 · 75,451–76,811 bp · +
petD · MW420952.1 · 77,000–78,201 bp · +
ycf2 · MW420952.1 · 86,607–93,416 bp · +
ycf15 · MW420952.1 · 93,558–93,755 bp · +
trnV-GAC · MW420952.1 · 100,009–100,080 bp · +
rrn16 · MW420952.1 · 100,307–101,794 bp · +
trnI-GAU · MW420952.1 · 102,093–103,112 bp · +
trnA-UGC · MW420952.1 · 103,178–104,066 bp · +
rrn23 · MW420952.1 · 104,236–107,049 bp · +
rrn4.5 · MW420952.1 · 107,148–107,250 bp · +
rrn5 · MW420952.1 · 107,497–107,617 bp · +
trnR-ACG · MW420952.1 · 107,852–107,925 bp · +
trnN-GUU · MW420952.1 · 108,472–108,543 bp · +
rpl32 · MW420952.1 · 112,371–112,538 bp · +
trnL-UAG · MW420952.1 · 112,986–113,065 bp · +
ccsA · MW420952.1 · 113,163–114,137 bp · +
rps7 · MW420952.1 · 139,255–139,722 bp · +
ndhB · MW420952.1 · 139,997–142,208 bp · +
trnL-CAA · MW420952.1 · 142,751–142,831 bp · +
trnI-CAU · MW420952.1 · 150,324–150,397 bp · +
rpl23 · MW420952.1 · 150,557–150,838 bp · +
rpl2 · MW420952.1 · 150,857–152,339 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria dependens
ANNOTATED PLASTOME
MW420952.1
152,434 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38108 76217 114326 152434 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnN-GUU trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1676 4255 2580 Locate
matK gene − 1967 3502 1536 Locate
rps16 gene − 5159 6327 1169 Locate
trnQ-UUC gene − 7456 7527 72 Locate
psbK gene + 7852 8037 186 Locate
psbI gene + 8429 8539 111 Locate
trnS-GCU gene − 8657 8744 88 Locate
trnG-CGA gene + 9433 10193 761 Locate
trnR-UCU gene + 10368 10439 72 Locate
atpA gene − 10536 12059 1524 Locate
atpF gene − 12133 13360 1228 Locate
atpH gene − 13736 13981 246 Locate
atpI gene − 14974 15717 744 Locate
rps2 gene − 16065 16775 711 Locate
rpoC2 gene − 16992 21197 4206 Locate
rpoC1 gene − 21352 24186 2835 Locate
rpoB gene − 24213 27425 3213 Locate
trnC-GCA gene + 28588 28658 71 Locate
petN gene + 29361 29450 90 Locate
psbM gene − 30464 30568 105 Locate
trnD-GUC gene − 31094 31167 74 Locate
trnY-GUA gene − 31281 31364 84 Locate
trnE-UUC gene − 31424 31496 73 Locate
trnT-GGU gene + 32079 32150 72 Locate
psbD gene + 33462 34523 1062 Locate
psbC gene + 34471 35892 1422 Locate
trnS-UCA gene − 36127 36219 93 Locate
psbZ gene + 36530 36718 189 Locate
trnG-GCC gene + 36990 37060 71 Locate
trnfM-CAU gene − 37204 37277 74 Locate
rps14 gene − 37427 37729 303 Locate
psaB gene − 37857 40061 2205 Locate
psaA gene − 40087 42339 2253 Locate
ycf3 gene − 43013 44935 1923 Locate
trnS-GGA gene + 45734 45820 87 Locate
rps4 gene − 46106 46711 606 Locate
trnT-UGU gene − 47051 47123 73 Locate
trnL-UAA gene + 47810 48379 570 Locate
trnF-GAA gene + 48685 48757 73 Locate
ndhJ gene − 49406 49882 477 Locate
ndhK gene − 49990 50667 678 Locate
ndhC gene − 50720 51082 363 Locate
trnV-UAC gene − 52079 52731 653 Locate
trnM-CAU gene + 52912 52984 73 Locate
atpE gene − 53194 53595 402 Locate
atpB gene − 53592 55079 1488 Locate
rbcL gene + 55851 57293 1443 Locate
accD gene + 58004 59470 1467 Locate
psaI gene + 60202 60312 111 Locate
ycf4 gene + 60746 61300 555 Locate
cemA gene + 61989 62648 660 Locate
petA gene + 62855 63817 963 Locate
pabJ gene − 64839 64961 123 Locate
psbL gene − 65095 65211 117 Locate
psbF gene − 65235 65354 120 Locate
psbE gene − 65369 65620 252 Locate
petL gene + 66524 66619 96 Locate
petG gene + 66794 66907 114 Locate
trnW-CCA gene − 67026 67099 74 Locate
trnP-UGG gene − 67269 67342 74 Locate
psbJ gene + 67614 67748 135 Locate
rpl33 gene + 68220 68420 201 Locate
rps18 gene + 68595 68900 306 Locate
rpl20 gene − 69139 69525 387 Locate
rps12 gene − 70315 70440 126 Locate
clpP gene − 70583 72515 1933 Locate
psbB gene + 72976 74502 1527 Locate
psbT gene + 74695 74796 102 Locate
psbN gene − 74870 75001 132 Locate
psbH gene + 75105 75326 222 Locate
petB gene + 75451 76811 1361 Locate
petD gene + 77000 78201 1202 Locate
rpoA gene − 78364 79377 1014 Locate
rps11 gene − 79449 79865 417 Locate
rpl36 gene − 79967 80080 114 Locate
infA gene − 80176 80409 234 Locate
rps8 gene − 80529 80939 411 Locate
rpl14 gene − 81098 81466 369 Locate
rpl16 gene − 81593 82836 1244 Locate
rps3 gene − 82991 83653 663 Locate
rpl22 gene − 83655 84110 456 Locate
rps19 gene − 84170 84448 279 Locate
rpl2 gene − 84503 85985 1483 Locate
rpl23 gene − 86004 86285 282 Locate
trnI-CAU gene − 86445 86518 74 Locate
ycf2 gene + 86607 93416 6810 Locate
ycf15 gene + 93558 93755 198 Locate
trnL-CAA gene − 94011 94091 81 Locate
ndhB gene − 94634 96845 2212 Locate
rps7 gene − 97120 97587 468 Locate
rps12 gene − 97641 98431 791 Locate
trnV-GAC gene + 100009 100080 72 Locate
rrn16 gene + 100307 101794 1488 Locate
trnI-GAU gene + 102093 103112 1020 Locate
trnA-UGC gene + 103178 104066 889 Locate
rrn23 gene + 104236 107049 2814 Locate
rrn4.5 gene + 107148 107250 103 Locate
rrn5 gene + 107497 107617 121 Locate
trnR-ACG gene + 107852 107925 74 Locate
trnN-GUU gene + 108472 108543 72 Locate
ndhF gene − 109620 111860 2241 Locate
rpl32 gene + 112371 112538 168 Locate
trnL-UAG gene + 112986 113065 80 Locate
ccsA gene + 113163 114137 975 Locate
ndhD gene − 114370 115899 1530 Locate
psaC gene − 115991 116236 246 Locate
ndhE gene − 116493 116798 306 Locate
ndhG gene − 117024 117554 531 Locate
ndhI gene − 117920 118420 501 Locate
ndhA gene − 118501 120600 2100 Locate
ndhH gene − 120602 121783 1182 Locate
rps15 gene − 121886 122158 273 Locate
ycf1 gene − 122426 127969 5544 Locate
trnN-GUU gene − 128299 128370 72 Locate
trnR-ACG gene − 128917 128990 74 Locate
rrn5 gene − 129225 129345 121 Locate
rrn4.5 gene − 129592 129694 103 Locate
rrn23 gene − 129793 132606 2814 Locate
trnA-UGC gene − 132776 133664 889 Locate
trnI-GAU gene − 133730 134749 1020 Locate
rrn16 gene − 135048 136535 1488 Locate
trnV-GAC gene − 136762 136833 72 Locate
rps12 gene + 138411 139201 791 Locate
rps7 gene + 139255 139722 468 Locate
ndhB gene + 139997 142208 2212 Locate
trnL-CAA gene + 142751 142831 81 Locate
ycf15 gene − 143087 143284 198 Locate
ycf2 gene − 143426 150235 6810 Locate
trnI-CAU gene + 150324 150397 74 Locate
rpl23 gene + 150557 150838 282 Locate
rpl2 gene + 150857 152339 1483 Locate
Status Available
Accession MW420952.1
Length 152,434 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources