Scutellaria diffusa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059212.1 · 4–77 bp · −
psbA · PQ059212.1 · 380–1,438 bp · −
trnK-UUU · PQ059212.1 · 1,679–4,261 bp · −
matK · PQ059212.1 · 1,969–3,504 bp · −
rps16 · PQ059212.1 · 5,154–6,316 bp · −
trnQ-UUG · PQ059212.1 · 7,431–7,502 bp · −
trnS-GCU · PQ059212.1 · 8,637–8,724 bp · −
atpA · PQ059212.1 · 10,505–12,028 bp · −
atpF · PQ059212.1 · 12,101–13,330 bp · −
atpH · PQ059212.1 · 13,693–13,938 bp · −
atpI · PQ059212.1 · 14,919–15,662 bp · −
rps2 · PQ059212.1 · 16,002–16,712 bp · −
rpoC2 · PQ059212.1 · 16,927–21,132 bp · −
rpoC1 · PQ059212.1 · 21,286–24,127 bp · −
rpoB · PQ059212.1 · 24,154–27,366 bp · −
psbM · PQ059212.1 · 30,402–30,506 bp · −
trnD-GUC · PQ059212.1 · 31,040–31,113 bp · −
trnY-GUA · PQ059212.1 · 31,227–31,310 bp · −
trnE-UUC · PQ059212.1 · 31,370–31,442 bp · −
trnS-UGA · PQ059212.1 · 36,058–36,149 bp · −
trnfM-CAU · PQ059212.1 · 37,131–37,204 bp · −
rps14 · PQ059212.1 · 37,359–37,661 bp · −
psaB · PQ059212.1 · 37,789–39,993 bp · −
psaA · PQ059212.1 · 40,019–42,271 bp · −
ycf3 · PQ059212.1 · 42,967–44,897 bp · −
rps4 · PQ059212.1 · 46,149–46,754 bp · −
trnT-UGU · PQ059212.1 · 47,086–47,158 bp · −
ndhJ · PQ059212.1 · 49,433–49,909 bp · −
ndhK · PQ059212.1 · 50,018–50,695 bp · −
ndhC · PQ059212.1 · 50,748–51,110 bp · −
trnV-UAC · PQ059212.1 · 52,097–52,749 bp · −
atpE · PQ059212.1 · 53,219–53,620 bp · −
atpB · PQ059212.1 · 53,617–55,113 bp · −
psbJ · PQ059212.1 · 64,844–64,966 bp · −
psbL · PQ059212.1 · 65,100–65,321 bp · −
psbF · PQ059212.1 · 65,240–65,359 bp · −
psbE · PQ059212.1 · 65,374–65,625 bp · −
trnW-CCA · PQ059212.1 · 66,993–67,066 bp · −
trnP-UGG · PQ059212.1 · 67,236–67,309 bp · −
rpl20 · PQ059212.1 · 69,227–69,613 bp · −
rps12 · PQ059212.1 · 70,390–70,515 bp · −
rps12 · PQ059212.1 · 97,690–98,480 bp · −
clpP · PQ059212.1 · 70,656–72,587 bp · −
psbN · PQ059212.1 · 74,949–75,080 bp · −
rpoA · PQ059212.1 · 78,441–79,448 bp · −
rps11 · PQ059212.1 · 79,520–79,936 bp · −
rpl36 · PQ059212.1 · 80,038–80,151 bp · −
infA · PQ059212.1 · 80,246–80,479 bp · −
rps8 · PQ059212.1 · 80,603–81,013 bp · −
rpl14 · PQ059212.1 · 81,170–81,538 bp · −
rpl16 · PQ059212.1 · 81,665–82,901 bp · −
rps3 · PQ059212.1 · 83,068–83,730 bp · −
rpl22 · PQ059212.1 · 83,732–84,187 bp · −
rps19 · PQ059212.1 · 84,247–84,525 bp · −
rpl2 · PQ059212.1 · 84,579–86,060 bp · −
rpl23 · PQ059212.1 · 86,079–86,360 bp · −
trnI-CAU · PQ059212.1 · 86,520–86,593 bp · −
trnL-CAA · PQ059212.1 · 94,060–94,140 bp · −
ndhB · PQ059212.1 · 94,683–96,894 bp · −
rps7 · PQ059212.1 · 97,169–97,636 bp · −
trnN-GUU · PQ059212.1 · 108,521–108,592 bp · −
ndhF · PQ059212.1 · 109,669–111,909 bp · −
ndhD · PQ059212.1 · 114,436–115,938 bp · −
psaC · PQ059212.1 · 116,064–116,309 bp · −
ndhE · PQ059212.1 · 116,565–116,870 bp · −
ndhG · PQ059212.1 · 117,092–117,622 bp · −
ndhI · PQ059212.1 · 117,988–118,488 bp · −
ndhA · PQ059212.1 · 118,576–120,684 bp · −
ndhH · PQ059212.1 · 120,686–121,867 bp · −
rps15 · PQ059212.1 · 121,964–122,236 bp · −
ycf1 · PQ059212.1 · 122,434–128,076 bp · −
trnR-ACG · PQ059212.1 · 128,918–128,991 bp · −
rrn5 · PQ059212.1 · 129,226–129,346 bp · −
rrn4.5 · PQ059212.1 · 129,594–129,696 bp · −
rrn23 · PQ059212.1 · 129,795–132,606 bp · −
trnA-UGC · PQ059212.1 · 132,776–133,663 bp · −
trnI-GAU · PQ059212.1 · 133,728–134,748 bp · −
ycf68 · PQ059212.1 · 134,300–134,593 bp · −
rrn16 · PQ059212.1 · 135,047–136,537 bp · −
trnV-GAC · PQ059212.1 · 136,764–136,835 bp · −
ycf15 · PQ059212.1 · 143,087–143,284 bp · −
ycf2 · PQ059212.1 · 143,426–150,205 bp · −
psbK · PQ059212.1 · 7,828–8,013 bp · +
psbI · PQ059212.1 · 8,407–8,517 bp · +
trnG-UCC · PQ059212.1 · 9,405–10,162 bp · +
trnR-UCU · PQ059212.1 · 10,337–10,408 bp · +
trnC-GCA · PQ059212.1 · 28,527–28,597 bp · +
petN · PQ059212.1 · 29,327–29,416 bp · +
trnT-GGU · PQ059212.1 · 32,011–32,082 bp · +
psbD · PQ059212.1 · 33,392–34,453 bp · +
psbC · PQ059212.1 · 34,401–35,822 bp · +
psbZ · PQ059212.1 · 36,457–36,645 bp · +
trnG-GCC · PQ059212.1 · 36,918–36,988 bp · +
trnS-GGA · PQ059212.1 · 45,781–45,867 bp · +
trnL-UAA · PQ059212.1 · 47,843–48,407 bp · +
trnF-GAA · PQ059212.1 · 48,719–48,791 bp · +
trnM-CAU · PQ059212.1 · 52,938–53,010 bp · +
rbcL · PQ059212.1 · 55,865–57,328 bp · +
accD · PQ059212.1 · 58,020–59,498 bp · +
psaI · PQ059212.1 · 60,209–60,319 bp · +
ycf4 · PQ059212.1 · 60,755–61,309 bp · +
cemA · PQ059212.1 · 62,052–62,651 bp · +
petA · PQ059212.1 · 62,858–63,820 bp · +
petL · PQ059212.1 · 66,490–66,585 bp · +
petG · PQ059212.1 · 66,761–66,874 bp · +
psaJ · PQ059212.1 · 67,581–67,715 bp · +
rpl33 · PQ059212.1 · 68,309–68,509 bp · +
rps18 · PQ059212.1 · 68,684–68,989 bp · +
rps12 · PQ059212.1 · 138,407–139,197 bp · +
psbB · PQ059212.1 · 73,054–74,580 bp · +
psbT · PQ059212.1 · 74,774–74,875 bp · +
psbH · PQ059212.1 · 75,184–75,405 bp · +
petB · PQ059212.1 · 75,531–76,898 bp · +
petD · PQ059212.1 · 77,087–78,278 bp · +
ycf2 · PQ059212.1 · 86,682–93,461 bp · +
ycf15 · PQ059212.1 · 93,603–93,800 bp · +
trnV-GAC · PQ059212.1 · 100,052–100,123 bp · +
rrn16 · PQ059212.1 · 100,350–101,840 bp · +
trnI-GAU · PQ059212.1 · 102,139–103,159 bp · +
trnA-UGC · PQ059212.1 · 103,224–104,111 bp · +
rrn23 · PQ059212.1 · 104,281–107,092 bp · +
rrn4.5 · PQ059212.1 · 107,191–107,293 bp · +
rrn5 · PQ059212.1 · 107,541–107,661 bp · +
trnR-ACG · PQ059212.1 · 107,896–107,969 bp · +
rpl32 · PQ059212.1 · 112,423–112,599 bp · +
trnL-UAG · PQ059212.1 · 113,046–113,125 bp · +
ccsA · PQ059212.1 · 113,228–114,202 bp · +
trnN-GUU · PQ059212.1 · 128,295–128,366 bp · +
rps7 · PQ059212.1 · 139,251–139,718 bp · +
ndhB · PQ059212.1 · 139,993–142,204 bp · +
trnL-CAA · PQ059212.1 · 142,747–142,827 bp · +
trnI-CAU · PQ059212.1 · 150,294–150,367 bp · +
rpl23 · PQ059212.1 · 150,527–150,808 bp · +
rpl2 · PQ059212.1 · 150,827–152,308 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria diffusa
ANNOTATED PLASTOME
PQ059212.1
152,407 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38102 76204 114305 152407 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1679 4261 2583 Locate
matK gene − 1969 3504 1536 Locate
rps16 gene − 5154 6316 1163 Locate
trnQ-UUG gene − 7431 7502 72 Locate
psbK gene + 7828 8013 186 Locate
psbI gene + 8407 8517 111 Locate
trnS-GCU gene − 8637 8724 88 Locate
trnG-UCC gene + 9405 10162 758 Locate
trnR-UCU gene + 10337 10408 72 Locate
atpA gene − 10505 12028 1524 Locate
atpF gene − 12101 13330 1230 Locate
atpH gene − 13693 13938 246 Locate
atpI gene − 14919 15662 744 Locate
rps2 gene − 16002 16712 711 Locate
rpoC2 gene − 16927 21132 4206 Locate
rpoC1 gene − 21286 24127 2842 Locate
rpoB gene − 24154 27366 3213 Locate
trnC-GCA gene + 28527 28597 71 Locate
petN gene + 29327 29416 90 Locate
psbM gene − 30402 30506 105 Locate
trnD-GUC gene − 31040 31113 74 Locate
trnY-GUA gene − 31227 31310 84 Locate
trnE-UUC gene − 31370 31442 73 Locate
trnT-GGU gene + 32011 32082 72 Locate
psbD gene + 33392 34453 1062 Locate
psbC gene + 34401 35822 1422 Locate
trnS-UGA gene − 36058 36149 92 Locate
psbZ gene + 36457 36645 189 Locate
trnG-GCC gene + 36918 36988 71 Locate
trnfM-CAU gene − 37131 37204 74 Locate
rps14 gene − 37359 37661 303 Locate
psaB gene − 37789 39993 2205 Locate
psaA gene − 40019 42271 2253 Locate
ycf3 gene − 42967 44897 1931 Locate
trnS-GGA gene + 45781 45867 87 Locate
rps4 gene − 46149 46754 606 Locate
trnT-UGU gene − 47086 47158 73 Locate
trnL-UAA gene + 47843 48407 565 Locate
trnF-GAA gene + 48719 48791 73 Locate
ndhJ gene − 49433 49909 477 Locate
ndhK gene − 50018 50695 678 Locate
ndhC gene − 50748 51110 363 Locate
trnV-UAC gene − 52097 52749 653 Locate
trnM-CAU gene + 52938 53010 73 Locate
atpE gene − 53219 53620 402 Locate
atpB gene − 53617 55113 1497 Locate
rbcL gene + 55865 57328 1464 Locate
accD gene + 58020 59498 1479 Locate
psaI gene + 60209 60319 111 Locate
ycf4 gene + 60755 61309 555 Locate
cemA gene + 62052 62651 600 Locate
petA gene + 62858 63820 963 Locate
psbJ gene − 64844 64966 123 Locate
psbL gene − 65100 65321 222 Locate
psbF gene − 65240 65359 120 Locate
psbE gene − 65374 65625 252 Locate
petL gene + 66490 66585 96 Locate
petG gene + 66761 66874 114 Locate
trnW-CCA gene − 66993 67066 74 Locate
trnP-UGG gene − 67236 67309 74 Locate
psaJ gene + 67581 67715 135 Locate
rpl33 gene + 68309 68509 201 Locate
rps18 gene + 68684 68989 306 Locate
rpl20 gene − 69227 69613 387 Locate
rps12 gene − 70390 70515 126 Locate
clpP gene − 70656 72587 1932 Locate
psbB gene + 73054 74580 1527 Locate
psbT gene + 74774 74875 102 Locate
psbN gene − 74949 75080 132 Locate
psbH gene + 75184 75405 222 Locate
petB gene + 75531 76898 1368 Locate
petD gene + 77087 78278 1192 Locate
rpoA gene − 78441 79448 1008 Locate
rps11 gene − 79520 79936 417 Locate
rpl36 gene − 80038 80151 114 Locate
infA gene − 80246 80479 234 Locate
rps8 gene − 80603 81013 411 Locate
rpl14 gene − 81170 81538 369 Locate
rpl16 gene − 81665 82901 1237 Locate
rps3 gene − 83068 83730 663 Locate
rpl22 gene − 83732 84187 456 Locate
rps19 gene − 84247 84525 279 Locate
rpl2 gene − 84579 86060 1482 Locate
rpl23 gene − 86079 86360 282 Locate
trnI-CAU gene − 86520 86593 74 Locate
ycf2 gene + 86682 93461 6780 Locate
ycf15 gene + 93603 93800 198 Locate
trnL-CAA gene − 94060 94140 81 Locate
ndhB gene − 94683 96894 2212 Locate
rps7 gene − 97169 97636 468 Locate
rps12 gene − 97690 98480 791 Locate
trnV-GAC gene + 100052 100123 72 Locate
rrn16 gene + 100350 101840 1491 Locate
trnI-GAU gene + 102139 103159 1021 Locate
trnA-UGC gene + 103224 104111 888 Locate
rrn23 gene + 104281 107092 2812 Locate
rrn4.5 gene + 107191 107293 103 Locate
rrn5 gene + 107541 107661 121 Locate
trnR-ACG gene + 107896 107969 74 Locate
trnN-GUU gene − 108521 108592 72 Locate
ndhF gene − 109669 111909 2241 Locate
rpl32 gene + 112423 112599 177 Locate
trnL-UAG gene + 113046 113125 80 Locate
ccsA gene + 113228 114202 975 Locate
ndhD gene − 114436 115938 1503 Locate
psaC gene − 116064 116309 246 Locate
ndhE gene − 116565 116870 306 Locate
ndhG gene − 117092 117622 531 Locate
ndhI gene − 117988 118488 501 Locate
ndhA gene − 118576 120684 2109 Locate
ndhH gene − 120686 121867 1182 Locate
rps15 gene − 121964 122236 273 Locate
ycf1 gene − 122434 128076 5643 Locate
trnN-GUU gene + 128295 128366 72 Locate
trnR-ACG gene − 128918 128991 74 Locate
rrn5 gene − 129226 129346 121 Locate
rrn4.5 gene − 129594 129696 103 Locate
rrn23 gene − 129795 132606 2812 Locate
trnA-UGC gene − 132776 133663 888 Locate
trnI-GAU gene − 133728 134748 1021 Locate
ycf68 gene − 134300 134593 294 Locate
rrn16 gene − 135047 136537 1491 Locate
trnV-GAC gene − 136764 136835 72 Locate
rps12 gene + 138407 139197 791 Locate
rps7 gene + 139251 139718 468 Locate
ndhB gene + 139993 142204 2212 Locate
trnL-CAA gene + 142747 142827 81 Locate
ycf15 gene − 143087 143284 198 Locate
ycf2 gene − 143426 150205 6780 Locate
trnI-CAU gene + 150294 150367 74 Locate
rpl23 gene + 150527 150808 282 Locate
rpl2 gene + 150827 152308 1482 Locate
Status Available
Accession PQ059212.1
Length 152,407 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources