Scutellaria discolor chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420951.1 · 3–76 bp · −
psbA · MW420951.1 · 369–1,427 bp · −
trnK-UUU · MW420951.1 · 1,673–4,253 bp · −
matK · MW420951.1 · 1,964–3,499 bp · −
rps16 · MW420951.1 · 5,131–6,294 bp · −
trnQ-UUC · MW420951.1 · 7,314–7,385 bp · −
trnS-GCU · MW420951.1 · 8,517–8,604 bp · −
atpA · MW420951.1 · 10,385–11,908 bp · −
atpF · MW420951.1 · 11,991–13,218 bp · −
atpH · MW420951.1 · 13,574–13,819 bp · −
atpI · MW420951.1 · 14,815–15,558 bp · −
rps2 · MW420951.1 · 15,906–16,616 bp · −
rpoC2 · MW420951.1 · 16,833–21,038 bp · −
rpoC1 · MW420951.1 · 21,202–24,024 bp · −
rpoB · MW420951.1 · 24,051–27,263 bp · −
psbM · MW420951.1 · 30,279–30,383 bp · −
trnD-GUC · MW420951.1 · 30,910–30,983 bp · −
trnY-GUA · MW420951.1 · 31,097–31,180 bp · −
trnE-UUC · MW420951.1 · 31,240–31,312 bp · −
trnS-UCA · MW420951.1 · 35,926–36,018 bp · −
trnfM-CAU · MW420951.1 · 37,021–37,094 bp · −
rps14 · MW420951.1 · 37,244–37,546 bp · −
psaB · MW420951.1 · 37,674–39,878 bp · −
psaA · MW420951.1 · 39,904–42,156 bp · −
ycf3 · MW420951.1 · 42,826–44,748 bp · −
rps4 · MW420951.1 · 45,996–46,601 bp · −
trnT-UGU · MW420951.1 · 46,939–47,011 bp · −
ndhJ · MW420951.1 · 49,284–49,760 bp · −
ndhK · MW420951.1 · 49,868–50,545 bp · −
ndhC · MW420951.1 · 50,599–50,961 bp · −
trnV-UAC · MW420951.1 · 51,817–52,469 bp · −
atpE · MW420951.1 · 52,929–53,330 bp · −
atpB · MW420951.1 · 53,327–54,814 bp · −
pabJ · MW420951.1 · 64,442–64,564 bp · −
psbL · MW420951.1 · 64,698–64,814 bp · −
psbF · MW420951.1 · 64,838–64,957 bp · −
psbE · MW420951.1 · 64,972–65,223 bp · −
trnW-CCA · MW420951.1 · 66,635–66,708 bp · −
trnP-UGG · MW420951.1 · 66,869–66,942 bp · −
rpl20 · MW420951.1 · 68,742–69,128 bp · −
rps12 · MW420951.1 · 69,916–70,041 bp · −
rps12 · MW420951.1 · 97,205–97,995 bp · −
clpP · MW420951.1 · 70,184–72,117 bp · −
psbN · MW420951.1 · 74,455–74,586 bp · −
rpoA · MW420951.1 · 77,945–78,958 bp · −
rps11 · MW420951.1 · 79,030–79,446 bp · −
rpl36 · MW420951.1 · 79,548–79,661 bp · −
infA · MW420951.1 · 79,757–79,990 bp · −
rps8 · MW420951.1 · 80,110–80,520 bp · −
rpl14 · MW420951.1 · 80,688–81,056 bp · −
rpl16 · MW420951.1 · 81,183–82,409 bp · −
rps3 · MW420951.1 · 82,564–83,226 bp · −
rpl22 · MW420951.1 · 83,228–83,674 bp · −
rps19 · MW420951.1 · 83,734–84,012 bp · −
rpl2 · MW420951.1 · 84,067–85,549 bp · −
rpl23 · MW420951.1 · 85,568–85,849 bp · −
trnI-CAU · MW420951.1 · 86,009–86,082 bp · −
trnL-CAA · MW420951.1 · 93,575–93,655 bp · −
ndhB · MW420951.1 · 94,198–96,409 bp · −
rps7 · MW420951.1 · 96,684–97,151 bp · −
ndhF · MW420951.1 · 109,181–111,421 bp · −
ndhD · MW420951.1 · 113,955–115,484 bp · −
psaC · MW420951.1 · 115,576–115,821 bp · −
ndhE · MW420951.1 · 116,078–116,383 bp · −
ndhG · MW420951.1 · 116,604–117,134 bp · −
ndhI · MW420951.1 · 117,499–117,999 bp · −
ndhA · MW420951.1 · 118,080–120,175 bp · −
ndhH · MW420951.1 · 120,177–121,358 bp · −
rps15 · MW420951.1 · 121,461–121,733 bp · −
ycf1 · MW420951.1 · 122,000–127,300 bp · −
trnR-ACG · MW420951.1 · 128,248–128,321 bp · −
rrn5 · MW420951.1 · 128,556–128,676 bp · −
rrn4.5 · MW420951.1 · 128,924–129,026 bp · −
rrn23 · MW420951.1 · 129,125–131,937 bp · −
trnA-UGC · MW420951.1 · 132,107–132,988 bp · −
trnI-GAU · MW420951.1 · 133,054–134,073 bp · −
rrn16 · MW420951.1 · 134,372–135,862 bp · −
trnV-GAC · MW420951.1 · 136,090–136,161 bp · −
ycf15 · MW420951.1 · 142,415–142,612 bp · −
ycf2 · MW420951.1 · 142,754–149,563 bp · −
psbK · MW420951.1 · 7,710–7,895 bp · +
psbI · MW420951.1 · 8,288–8,398 bp · +
trnG-CGA · MW420951.1 · 9,286–10,046 bp · +
trnR-UCU · MW420951.1 · 10,217–10,288 bp · +
trnC-GCA · MW420951.1 · 28,433–28,503 bp · +
petN · MW420951.1 · 29,215–29,304 bp · +
trnT-GGU · MW420951.1 · 31,888–31,959 bp · +
psbD · MW420951.1 · 33,261–34,322 bp · +
psbC · MW420951.1 · 34,270–35,691 bp · +
psbZ · MW420951.1 · 36,338–36,526 bp · +
trnG-GCC · MW420951.1 · 36,798–36,868 bp · +
trnS-GGA · MW420951.1 · 45,624–45,710 bp · +
trnL-UAA · MW420951.1 · 47,696–48,257 bp · +
trnF-GAA · MW420951.1 · 48,563–48,635 bp · +
trnM-CAU · MW420951.1 · 52,641–52,713 bp · +
rbcL · MW420951.1 · 55,604–57,046 bp · +
accD · MW420951.1 · 57,780–59,246 bp · +
psaI · MW420951.1 · 59,804–59,914 bp · +
ycf4 · MW420951.1 · 60,348–60,902 bp · +
cemA · MW420951.1 · 61,580–62,239 bp · +
petA · MW420951.1 · 62,446–63,408 bp · +
petL · MW420951.1 · 66,132–66,227 bp · +
petG · MW420951.1 · 66,403–66,516 bp · +
psbJ · MW420951.1 · 67,214–67,348 bp · +
rpl33 · MW420951.1 · 67,822–68,022 bp · +
rps18 · MW420951.1 · 68,197–68,502 bp · +
rps12 · MW420951.1 · 137,739–138,529 bp · +
psbB · MW420951.1 · 72,562–74,088 bp · +
psbT · MW420951.1 · 74,280–74,381 bp · +
psbH · MW420951.1 · 74,690–74,911 bp · +
petB · MW420951.1 · 75,036–76,403 bp · +
petD · MW420951.1 · 76,592–77,782 bp · +
ycf2 · MW420951.1 · 86,171–92,980 bp · +
ycf15 · MW420951.1 · 93,122–93,319 bp · +
trnV-GAC · MW420951.1 · 99,573–99,644 bp · +
rrn16 · MW420951.1 · 99,872–101,362 bp · +
trnI-GAU · MW420951.1 · 101,661–102,680 bp · +
trnA-UGC · MW420951.1 · 102,746–103,627 bp · +
rrn23 · MW420951.1 · 103,797–106,609 bp · +
rrn4.5 · MW420951.1 · 106,708–106,810 bp · +
rrn5 · MW420951.1 · 107,058–107,178 bp · +
trnR-ACG · MW420951.1 · 107,413–107,486 bp · +
trnN-GUU · MW420951.1 · 108,033–108,104 bp · +
rpl32 · MW420951.1 · 111,942–112,118 bp · +
trnL-UAG · MW420951.1 · 112,563–112,642 bp · +
ccsA · MW420951.1 · 112,748–113,722 bp · +
trnN-GUU · MW420951.1 · 127,630–127,701 bp · +
rps7 · MW420951.1 · 138,583–139,050 bp · +
ndhB · MW420951.1 · 139,325–141,536 bp · +
trnL-CAA · MW420951.1 · 142,079–142,159 bp · +
trnI-CAU · MW420951.1 · 149,652–149,725 bp · +
rpl23 · MW420951.1 · 149,885–150,166 bp · +
rpl2 · MW420951.1 · 150,185–151,667 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria discolor
ANNOTATED PLASTOME
MW420951.1
151,762 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37940 75881 113822 151762 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1673 4253 2581 Locate
matK gene − 1964 3499 1536 Locate
rps16 gene − 5131 6294 1164 Locate
trnQ-UUC gene − 7314 7385 72 Locate
psbK gene + 7710 7895 186 Locate
psbI gene + 8288 8398 111 Locate
trnS-GCU gene − 8517 8604 88 Locate
trnG-CGA gene + 9286 10046 761 Locate
trnR-UCU gene + 10217 10288 72 Locate
atpA gene − 10385 11908 1524 Locate
atpF gene − 11991 13218 1228 Locate
atpH gene − 13574 13819 246 Locate
atpI gene − 14815 15558 744 Locate
rps2 gene − 15906 16616 711 Locate
rpoC2 gene − 16833 21038 4206 Locate
rpoC1 gene − 21202 24024 2823 Locate
rpoB gene − 24051 27263 3213 Locate
trnC-GCA gene + 28433 28503 71 Locate
petN gene + 29215 29304 90 Locate
psbM gene − 30279 30383 105 Locate
trnD-GUC gene − 30910 30983 74 Locate
trnY-GUA gene − 31097 31180 84 Locate
trnE-UUC gene − 31240 31312 73 Locate
trnT-GGU gene + 31888 31959 72 Locate
psbD gene + 33261 34322 1062 Locate
psbC gene + 34270 35691 1422 Locate
trnS-UCA gene − 35926 36018 93 Locate
psbZ gene + 36338 36526 189 Locate
trnG-GCC gene + 36798 36868 71 Locate
trnfM-CAU gene − 37021 37094 74 Locate
rps14 gene − 37244 37546 303 Locate
psaB gene − 37674 39878 2205 Locate
psaA gene − 39904 42156 2253 Locate
ycf3 gene − 42826 44748 1923 Locate
trnS-GGA gene + 45624 45710 87 Locate
rps4 gene − 45996 46601 606 Locate
trnT-UGU gene − 46939 47011 73 Locate
trnL-UAA gene + 47696 48257 562 Locate
trnF-GAA gene + 48563 48635 73 Locate
ndhJ gene − 49284 49760 477 Locate
ndhK gene − 49868 50545 678 Locate
ndhC gene − 50599 50961 363 Locate
trnV-UAC gene − 51817 52469 653 Locate
trnM-CAU gene + 52641 52713 73 Locate
atpE gene − 52929 53330 402 Locate
atpB gene − 53327 54814 1488 Locate
rbcL gene + 55604 57046 1443 Locate
accD gene + 57780 59246 1467 Locate
psaI gene + 59804 59914 111 Locate
ycf4 gene + 60348 60902 555 Locate
cemA gene + 61580 62239 660 Locate
petA gene + 62446 63408 963 Locate
pabJ gene − 64442 64564 123 Locate
psbL gene − 64698 64814 117 Locate
psbF gene − 64838 64957 120 Locate
psbE gene − 64972 65223 252 Locate
petL gene + 66132 66227 96 Locate
petG gene + 66403 66516 114 Locate
trnW-CCA gene − 66635 66708 74 Locate
trnP-UGG gene − 66869 66942 74 Locate
psbJ gene + 67214 67348 135 Locate
rpl33 gene + 67822 68022 201 Locate
rps18 gene + 68197 68502 306 Locate
rpl20 gene − 68742 69128 387 Locate
rps12 gene − 69916 70041 126 Locate
clpP gene − 70184 72117 1934 Locate
psbB gene + 72562 74088 1527 Locate
psbT gene + 74280 74381 102 Locate
psbN gene − 74455 74586 132 Locate
psbH gene + 74690 74911 222 Locate
petB gene + 75036 76403 1368 Locate
petD gene + 76592 77782 1191 Locate
rpoA gene − 77945 78958 1014 Locate
rps11 gene − 79030 79446 417 Locate
rpl36 gene − 79548 79661 114 Locate
infA gene − 79757 79990 234 Locate
rps8 gene − 80110 80520 411 Locate
rpl14 gene − 80688 81056 369 Locate
rpl16 gene − 81183 82409 1227 Locate
rps3 gene − 82564 83226 663 Locate
rpl22 gene − 83228 83674 447 Locate
rps19 gene − 83734 84012 279 Locate
rpl2 gene − 84067 85549 1483 Locate
rpl23 gene − 85568 85849 282 Locate
trnI-CAU gene − 86009 86082 74 Locate
ycf2 gene + 86171 92980 6810 Locate
ycf15 gene + 93122 93319 198 Locate
trnL-CAA gene − 93575 93655 81 Locate
ndhB gene − 94198 96409 2212 Locate
rps7 gene − 96684 97151 468 Locate
rps12 gene − 97205 97995 791 Locate
trnV-GAC gene + 99573 99644 72 Locate
rrn16 gene + 99872 101362 1491 Locate
trnI-GAU gene + 101661 102680 1020 Locate
trnA-UGC gene + 102746 103627 882 Locate
rrn23 gene + 103797 106609 2813 Locate
rrn4.5 gene + 106708 106810 103 Locate
rrn5 gene + 107058 107178 121 Locate
trnR-ACG gene + 107413 107486 74 Locate
trnN-GUU gene + 108033 108104 72 Locate
ndhF gene − 109181 111421 2241 Locate
rpl32 gene + 111942 112118 177 Locate
trnL-UAG gene + 112563 112642 80 Locate
ccsA gene + 112748 113722 975 Locate
ndhD gene − 113955 115484 1530 Locate
psaC gene − 115576 115821 246 Locate
ndhE gene − 116078 116383 306 Locate
ndhG gene − 116604 117134 531 Locate
ndhI gene − 117499 117999 501 Locate
ndhA gene − 118080 120175 2096 Locate
ndhH gene − 120177 121358 1182 Locate
rps15 gene − 121461 121733 273 Locate
ycf1 gene − 122000 127300 5301 Locate
trnN-GUU gene + 127630 127701 72 Locate
trnR-ACG gene − 128248 128321 74 Locate
rrn5 gene − 128556 128676 121 Locate
rrn4.5 gene − 128924 129026 103 Locate
rrn23 gene − 129125 131937 2813 Locate
trnA-UGC gene − 132107 132988 882 Locate
trnI-GAU gene − 133054 134073 1020 Locate
rrn16 gene − 134372 135862 1491 Locate
trnV-GAC gene − 136090 136161 72 Locate
rps12 gene + 137739 138529 791 Locate
rps7 gene + 138583 139050 468 Locate
ndhB gene + 139325 141536 2212 Locate
trnL-CAA gene + 142079 142159 81 Locate
ycf15 gene − 142415 142612 198 Locate
ycf2 gene − 142754 149563 6810 Locate
trnI-CAU gene + 149652 149725 74 Locate
rpl23 gene + 149885 150166 282 Locate
rpl2 gene + 150185 151667 1483 Locate
Status Available
Accession MW420951.1
Length 151,762 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources