Scutellaria drummondii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420974.1 · 3–76 bp · −
psbA · MW420974.1 · 382–1,440 bp · −
trnK-UUU · MW420974.1 · 1,672–4,246 bp · −
matK · MW420974.1 · 1,963–3,498 bp · −
rps16 · MW420974.1 · 5,138–6,284 bp · −
trnQ-UUC · MW420974.1 · 7,438–7,509 bp · −
trnS-GCU · MW420974.1 · 8,635–8,722 bp · −
atpA · MW420974.1 · 10,547–12,070 bp · −
atpF · MW420974.1 · 12,155–13,382 bp · −
atpH · MW420974.1 · 13,738–13,983 bp · −
atpI · MW420974.1 · 14,982–15,725 bp · −
rps2 · MW420974.1 · 16,074–16,784 bp · −
rpoC2 · MW420974.1 · 17,001–21,194 bp · −
rpoC1 · MW420974.1 · 21,349–24,182 bp · −
rpoB · MW420974.1 · 24,209–27,421 bp · −
psbM · MW420974.1 · 30,471–30,575 bp · −
trnD-GUC · MW420974.1 · 31,101–31,174 bp · −
trnY-GUA · MW420974.1 · 31,288–31,371 bp · −
trnE-UUC · MW420974.1 · 31,431–31,503 bp · −
trnS-UCA · MW420974.1 · 36,148–36,240 bp · −
trnfM-CAU · MW420974.1 · 37,241–37,314 bp · −
rps14 · MW420974.1 · 37,464–37,766 bp · −
psaB · MW420974.1 · 37,894–40,098 bp · −
psaA · MW420974.1 · 40,124–42,376 bp · −
ycf3 · MW420974.1 · 43,087–45,010 bp · −
rps4 · MW420974.1 · 46,268–46,873 bp · −
trnT-UGU · MW420974.1 · 47,214–47,286 bp · −
ndhJ · MW420974.1 · 49,504–49,980 bp · −
ndhK · MW420974.1 · 50,088–50,765 bp · −
ndhC · MW420974.1 · 50,819–51,181 bp · −
trnV-UAC · MW420974.1 · 52,169–52,821 bp · −
atpE · MW420974.1 · 53,284–53,685 bp · −
atpB · MW420974.1 · 53,682–55,178 bp · −
pabJ · MW420974.1 · 64,880–65,002 bp · −
psbL · MW420974.1 · 65,136–65,252 bp · −
psbF · MW420974.1 · 65,276–65,395 bp · −
psbE · MW420974.1 · 65,410–65,661 bp · −
trnW-CCA · MW420974.1 · 67,073–67,146 bp · −
trnP-UGG · MW420974.1 · 67,310–67,383 bp · −
rpl20 · MW420974.1 · 69,176–69,562 bp · −
rps12 · MW420974.1 · 70,342–70,467 bp · −
rps12 · MW420974.1 · 97,606–98,396 bp · −
clpP · MW420974.1 · 70,608–72,551 bp · −
psbN · MW420974.1 · 74,894–75,025 bp · −
rpoA · MW420974.1 · 78,394–79,407 bp · −
rps11 · MW420974.1 · 79,479–79,895 bp · −
rpl36 · MW420974.1 · 79,997–80,110 bp · −
infA · MW420974.1 · 80,204–80,437 bp · −
rps8 · MW420974.1 · 80,557–80,967 bp · −
rpl14 · MW420974.1 · 81,125–81,493 bp · −
rpl16 · MW420974.1 · 81,623–82,806 bp · −
rps3 · MW420974.1 · 82,962–83,624 bp · −
rpl22 · MW420974.1 · 83,651–84,082 bp · −
rps19 · MW420974.1 · 84,146–84,424 bp · −
rpl2 · MW420974.1 · 84,479–85,961 bp · −
rpl23 · MW420974.1 · 85,980–86,261 bp · −
trnI-CAU · MW420974.1 · 86,421–86,494 bp · −
trnL-CAA · MW420974.1 · 93,976–94,056 bp · −
ndhB · MW420974.1 · 94,599–96,810 bp · −
rps7 · MW420974.1 · 97,085–97,552 bp · −
ndhF · MW420974.1 · 109,554–111,794 bp · −
ndhD · MW420974.1 · 114,323–115,843 bp · −
psaC · MW420974.1 · 115,953–116,198 bp · −
ndhE · MW420974.1 · 116,461–116,766 bp · −
ndhG · MW420974.1 · 116,987–117,517 bp · −
ndhI · MW420974.1 · 117,883–118,383 bp · −
ndhA · MW420974.1 · 118,464–120,561 bp · −
ndhH · MW420974.1 · 120,563–121,744 bp · −
rps15 · MW420974.1 · 121,841–122,113 bp · −
ycf1 · MW420974.1 · 122,387–127,843 bp · −
trnR-ACG · MW420974.1 · 128,790–128,863 bp · −
rrn5 · MW420974.1 · 129,088–129,208 bp · −
rrn4.5 · MW420974.1 · 129,456–129,558 bp · −
rrn23 · MW420974.1 · 129,657–132,469 bp · −
trnA-UGC · MW420974.1 · 132,632–133,518 bp · −
trnI-GAU · MW420974.1 · 133,584–134,603 bp · −
rrn16 · MW420974.1 · 134,902–136,392 bp · −
trnV-GAC · MW420974.1 · 136,620–136,691 bp · −
ycf15 · MW420974.1 · 142,928–143,125 bp · −
ycf2 · MW420974.1 · 143,267–150,067 bp · −
psbK · MW420974.1 · 7,834–8,019 bp · +
psbI · MW420974.1 · 8,416–8,526 bp · +
trnG-CGA · MW420974.1 · 9,414–10,171 bp · +
trnR-UCU · MW420974.1 · 10,379–10,450 bp · +
trnC-GCA · MW420974.1 · 28,579–28,649 bp · +
petN · MW420974.1 · 29,354–29,443 bp · +
trnT-GGU · MW420974.1 · 32,093–32,164 bp · +
psbD · MW420974.1 · 33,468–34,529 bp · +
psbC · MW420974.1 · 34,477–35,898 bp · +
psbZ · MW420974.1 · 36,560–36,748 bp · +
trnG-GCC · MW420974.1 · 37,020–37,090 bp · +
trnS-GGA · MW420974.1 · 45,897–45,983 bp · +
trnL-UAA · MW420974.1 · 47,922–48,483 bp · +
trnF-GAA · MW420974.1 · 48,788–48,860 bp · +
trnM-CAU · MW420974.1 · 53,002–53,074 bp · +
rbcL · MW420974.1 · 55,956–57,398 bp · +
accD · MW420974.1 · 58,130–59,578 bp · +
psaI · MW420974.1 · 60,286–60,396 bp · +
ycf4 · MW420974.1 · 60,823–61,377 bp · +
cemA · MW420974.1 · 62,058–62,717 bp · +
petA · MW420974.1 · 62,923–63,885 bp · +
petL · MW420974.1 · 66,570–66,665 bp · +
petG · MW420974.1 · 66,841–66,954 bp · +
psbJ · MW420974.1 · 67,657–67,791 bp · +
rpl33 · MW420974.1 · 68,263–68,463 bp · +
rps18 · MW420974.1 · 68,637–68,942 bp · +
rps12 · MW420974.1 · 138,254–139,044 bp · +
psbB · MW420974.1 · 73,005–74,531 bp · +
psbT · MW420974.1 · 74,723–74,824 bp · +
psbH · MW420974.1 · 75,129–75,350 bp · +
petB · MW420974.1 · 75,475–76,842 bp · +
petD · MW420974.1 · 77,031–78,231 bp · +
ycf2 · MW420974.1 · 86,583–93,383 bp · +
ycf15 · MW420974.1 · 93,525–93,722 bp · +
trnV-GAC · MW420974.1 · 99,959–100,030 bp · +
rrn16 · MW420974.1 · 100,258–101,748 bp · +
trnI-GAU · MW420974.1 · 102,047–103,066 bp · +
trnA-UGC · MW420974.1 · 103,132–104,018 bp · +
rrn23 · MW420974.1 · 104,181–106,993 bp · +
rrn4.5 · MW420974.1 · 107,092–107,194 bp · +
rrn5 · MW420974.1 · 107,442–107,562 bp · +
trnR-ACG · MW420974.1 · 107,787–107,860 bp · +
trnN-GUU · MW420974.1 · 108,406–108,477 bp · +
rpl32 · MW420974.1 · 112,317–112,493 bp · +
trnL-UAG · MW420974.1 · 112,934–113,013 bp · +
ccsA · MW420974.1 · 113,110–114,084 bp · +
trnN-GUU · MW420974.1 · 128,173–128,244 bp · +
rps7 · MW420974.1 · 139,098–139,565 bp · +
ndhB · MW420974.1 · 139,840–142,051 bp · +
trnL-CAA · MW420974.1 · 142,594–142,674 bp · +
trnI-CAU · MW420974.1 · 150,156–150,229 bp · +
rpl23 · MW420974.1 · 150,389–150,670 bp · +
rpl2 · MW420974.1 · 150,689–152,171 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria drummondii
ANNOTATED PLASTOME
MW420974.1
152,266 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38066 76133 114200 152266 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 382 1440 1059 Locate
trnK-UUU gene − 1672 4246 2575 Locate
matK gene − 1963 3498 1536 Locate
rps16 gene − 5138 6284 1147 Locate
trnQ-UUC gene − 7438 7509 72 Locate
psbK gene + 7834 8019 186 Locate
psbI gene + 8416 8526 111 Locate
trnS-GCU gene − 8635 8722 88 Locate
trnG-CGA gene + 9414 10171 758 Locate
trnR-UCU gene + 10379 10450 72 Locate
atpA gene − 10547 12070 1524 Locate
atpF gene − 12155 13382 1228 Locate
atpH gene − 13738 13983 246 Locate
atpI gene − 14982 15725 744 Locate
rps2 gene − 16074 16784 711 Locate
rpoC2 gene − 17001 21194 4194 Locate
rpoC1 gene − 21349 24182 2834 Locate
rpoB gene − 24209 27421 3213 Locate
trnC-GCA gene + 28579 28649 71 Locate
petN gene + 29354 29443 90 Locate
psbM gene − 30471 30575 105 Locate
trnD-GUC gene − 31101 31174 74 Locate
trnY-GUA gene − 31288 31371 84 Locate
trnE-UUC gene − 31431 31503 73 Locate
trnT-GGU gene + 32093 32164 72 Locate
psbD gene + 33468 34529 1062 Locate
psbC gene + 34477 35898 1422 Locate
trnS-UCA gene − 36148 36240 93 Locate
psbZ gene + 36560 36748 189 Locate
trnG-GCC gene + 37020 37090 71 Locate
trnfM-CAU gene − 37241 37314 74 Locate
rps14 gene − 37464 37766 303 Locate
psaB gene − 37894 40098 2205 Locate
psaA gene − 40124 42376 2253 Locate
ycf3 gene − 43087 45010 1924 Locate
trnS-GGA gene + 45897 45983 87 Locate
rps4 gene − 46268 46873 606 Locate
trnT-UGU gene − 47214 47286 73 Locate
trnL-UAA gene + 47922 48483 562 Locate
trnF-GAA gene + 48788 48860 73 Locate
ndhJ gene − 49504 49980 477 Locate
ndhK gene − 50088 50765 678 Locate
ndhC gene − 50819 51181 363 Locate
trnV-UAC gene − 52169 52821 653 Locate
trnM-CAU gene + 53002 53074 73 Locate
atpE gene − 53284 53685 402 Locate
atpB gene − 53682 55178 1497 Locate
rbcL gene + 55956 57398 1443 Locate
accD gene + 58130 59578 1449 Locate
psaI gene + 60286 60396 111 Locate
ycf4 gene + 60823 61377 555 Locate
cemA gene + 62058 62717 660 Locate
petA gene + 62923 63885 963 Locate
pabJ gene − 64880 65002 123 Locate
psbL gene − 65136 65252 117 Locate
psbF gene − 65276 65395 120 Locate
psbE gene − 65410 65661 252 Locate
petL gene + 66570 66665 96 Locate
petG gene + 66841 66954 114 Locate
trnW-CCA gene − 67073 67146 74 Locate
trnP-UGG gene − 67310 67383 74 Locate
psbJ gene + 67657 67791 135 Locate
rpl33 gene + 68263 68463 201 Locate
rps18 gene + 68637 68942 306 Locate
rpl20 gene − 69176 69562 387 Locate
rps12 gene − 70342 70467 126 Locate
clpP gene − 70608 72551 1944 Locate
psbB gene + 73005 74531 1527 Locate
psbT gene + 74723 74824 102 Locate
psbN gene − 74894 75025 132 Locate
psbH gene + 75129 75350 222 Locate
petB gene + 75475 76842 1368 Locate
petD gene + 77031 78231 1201 Locate
rpoA gene − 78394 79407 1014 Locate
rps11 gene − 79479 79895 417 Locate
rpl36 gene − 79997 80110 114 Locate
infA gene − 80204 80437 234 Locate
rps8 gene − 80557 80967 411 Locate
rpl14 gene − 81125 81493 369 Locate
rpl16 gene − 81623 82806 1184 Locate
rps3 gene − 82962 83624 663 Locate
rpl22 gene − 83651 84082 432 Locate
rps19 gene − 84146 84424 279 Locate
rpl2 gene − 84479 85961 1483 Locate
rpl23 gene − 85980 86261 282 Locate
trnI-CAU gene − 86421 86494 74 Locate
ycf2 gene + 86583 93383 6801 Locate
ycf15 gene + 93525 93722 198 Locate
trnL-CAA gene − 93976 94056 81 Locate
ndhB gene − 94599 96810 2212 Locate
rps7 gene − 97085 97552 468 Locate
rps12 gene − 97606 98396 791 Locate
trnV-GAC gene + 99959 100030 72 Locate
rrn16 gene + 100258 101748 1491 Locate
trnI-GAU gene + 102047 103066 1020 Locate
trnA-UGC gene + 103132 104018 887 Locate
rrn23 gene + 104181 106993 2813 Locate
rrn4.5 gene + 107092 107194 103 Locate
rrn5 gene + 107442 107562 121 Locate
trnR-ACG gene + 107787 107860 74 Locate
trnN-GUU gene + 108406 108477 72 Locate
ndhF gene − 109554 111794 2241 Locate
rpl32 gene + 112317 112493 177 Locate
trnL-UAG gene + 112934 113013 80 Locate
ccsA gene + 113110 114084 975 Locate
ndhD gene − 114323 115843 1521 Locate
psaC gene − 115953 116198 246 Locate
ndhE gene − 116461 116766 306 Locate
ndhG gene − 116987 117517 531 Locate
ndhI gene − 117883 118383 501 Locate
ndhA gene − 118464 120561 2098 Locate
ndhH gene − 120563 121744 1182 Locate
rps15 gene − 121841 122113 273 Locate
ycf1 gene − 122387 127843 5457 Locate
trnN-GUU gene + 128173 128244 72 Locate
trnR-ACG gene − 128790 128863 74 Locate
rrn5 gene − 129088 129208 121 Locate
rrn4.5 gene − 129456 129558 103 Locate
rrn23 gene − 129657 132469 2813 Locate
trnA-UGC gene − 132632 133518 887 Locate
trnI-GAU gene − 133584 134603 1020 Locate
rrn16 gene − 134902 136392 1491 Locate
trnV-GAC gene − 136620 136691 72 Locate
rps12 gene + 138254 139044 791 Locate
rps7 gene + 139098 139565 468 Locate
ndhB gene + 139840 142051 2212 Locate
trnL-CAA gene + 142594 142674 81 Locate
ycf15 gene − 142928 143125 198 Locate
ycf2 gene − 143267 150067 6801 Locate
trnI-CAU gene + 150156 150229 74 Locate
rpl23 gene + 150389 150670 282 Locate
rpl2 gene + 150689 152171 1483 Locate
Status Available
Accession MW420974.1
Length 152,266 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources