Scutellaria dumetorum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059399.1 · 1–74 bp · −
psbA · PQ059399.1 · 267–1,325 bp · −
trnK-UUU · PQ059399.1 · 1,558–4,152 bp · −
matK · PQ059399.1 · 1,858–3,396 bp · −
rps16 · PQ059399.1 · 5,066–6,229 bp · −
trnQ-UUG · PQ059399.1 · 7,327–7,398 bp · −
trnS-GCU · PQ059399.1 · 8,520–8,607 bp · −
atpA · PQ059399.1 · 10,393–11,916 bp · −
atpF · PQ059399.1 · 11,999–13,227 bp · −
atpH · PQ059399.1 · 13,584–13,829 bp · −
atpI · PQ059399.1 · 14,822–15,565 bp · −
rps2 · PQ059399.1 · 15,913–16,623 bp · −
rpoC2 · PQ059399.1 · 16,847–21,052 bp · −
rpoC1 · PQ059399.1 · 21,207–24,052 bp · −
rpoB · PQ059399.1 · 24,079–27,291 bp · −
psbM · PQ059399.1 · 30,329–30,433 bp · −
trnD-GUC · PQ059399.1 · 30,960–31,033 bp · −
trnY-GUA · PQ059399.1 · 31,147–31,230 bp · −
trnE-UUC · PQ059399.1 · 31,290–31,362 bp · −
trnS-UGA · PQ059399.1 · 38,511–38,602 bp · −
trnfM-CAU · PQ059399.1 · 39,599–39,672 bp · −
rps14 · PQ059399.1 · 39,822–40,124 bp · −
psaB · PQ059399.1 · 40,252–42,456 bp · −
psaA · PQ059399.1 · 42,482–44,734 bp · −
ycf3 · PQ059399.1 · 45,428–47,347 bp · −
rps4 · PQ059399.1 · 48,610–49,215 bp · −
trnT-UGU · PQ059399.1 · 49,568–49,640 bp · −
ndhJ · PQ059399.1 · 51,907–52,383 bp · −
ndhK · PQ059399.1 · 52,491–53,168 bp · −
ndhC · PQ059399.1 · 53,221–53,583 bp · −
trnV-UAC · PQ059399.1 · 54,029–54,682 bp · −
atpE · PQ059399.1 · 55,144–55,545 bp · −
atpB · PQ059399.1 · 55,542–57,038 bp · −
psbJ · PQ059399.1 · 66,677–66,799 bp · −
psbL · PQ059399.1 · 66,933–67,049 bp · −
psbF · PQ059399.1 · 67,073–67,192 bp · −
psbE · PQ059399.1 · 67,207–67,458 bp · −
trnW-CCA · PQ059399.1 · 68,869–68,942 bp · −
trnP-UGG · PQ059399.1 · 69,102–69,175 bp · −
rpl20 · PQ059399.1 · 70,983–71,369 bp · −
rps12 · PQ059399.1 · 72,168–72,281 bp · −
rps12 · PQ059399.1 · 99,478–100,268 bp · −
clpP · PQ059399.1 · 72,423–74,358 bp · −
psbN · PQ059399.1 · 76,716–76,847 bp · −
rpoA · PQ059399.1 · 80,220–81,233 bp · −
rps11 · PQ059399.1 · 81,305–81,721 bp · −
rpl36 · PQ059399.1 · 81,824–81,937 bp · −
infA · PQ059399.1 · 82,033–82,266 bp · −
rps8 · PQ059399.1 · 82,386–82,796 bp · −
rpl14 · PQ059399.1 · 82,967–83,335 bp · −
rpl16 · PQ059399.1 · 83,465–84,713 bp · −
rps3 · PQ059399.1 · 84,861–85,523 bp · −
rpl22 · PQ059399.1 · 85,525–85,980 bp · −
rps19 · PQ059399.1 · 86,040–86,318 bp · −
rpl2 · PQ059399.1 · 86,374–87,856 bp · −
rpl23 · PQ059399.1 · 87,875–88,156 bp · −
trnI-CAU · PQ059399.1 · 88,316–88,389 bp · −
trnL-CAA · PQ059399.1 · 95,848–95,928 bp · −
ndhB · PQ059399.1 · 96,471–98,628 bp · −
rps7 · PQ059399.1 · 98,957–99,424 bp · −
trnN-GUU · PQ059399.1 · 110,314–110,385 bp · −
ndhF · PQ059399.1 · 111,468–113,720 bp · −
ndhD · PQ059399.1 · 116,235–117,764 bp · −
psaC · PQ059399.1 · 117,863–118,108 bp · −
ndhE · PQ059399.1 · 118,372–118,677 bp · −
ndhG · PQ059399.1 · 118,899–119,429 bp · −
ndhI · PQ059399.1 · 119,793–120,293 bp · −
ndhA · PQ059399.1 · 120,374–122,471 bp · −
ndhH · PQ059399.1 · 122,473–123,654 bp · −
rps15 · PQ059399.1 · 123,751–124,023 bp · −
ycf1 · PQ059399.1 · 124,293–129,926 bp · −
trnR-ACG · PQ059399.1 · 130,773–130,846 bp · −
rrn5 · PQ059399.1 · 131,074–131,194 bp · −
rrn4.5 · PQ059399.1 · 131,442–131,544 bp · −
rrn23 · PQ059399.1 · 131,643–134,455 bp · −
trnA-UGC · PQ059399.1 · 134,625–135,512 bp · −
trnI-GAU · PQ059399.1 · 135,577–136,596 bp · −
ycf68 · PQ059399.1 · 136,148–136,441 bp · −
rrn16 · PQ059399.1 · 136,895–138,385 bp · −
trnV-GAC · PQ059399.1 · 138,613–138,684 bp · −
ycf15 · PQ059399.1 · 144,943–145,140 bp · −
ycf2 · PQ059399.1 · 145,282–152,052 bp · −
psbK · PQ059399.1 · 7,724–7,909 bp · +
psbI · PQ059399.1 · 8,301–8,411 bp · +
trnG-UCC · PQ059399.1 · 9,292–10,050 bp · +
trnR-UCU · PQ059399.1 · 10,225–10,296 bp · +
trnC-GCA · PQ059399.1 · 28,441–28,511 bp · +
petN · PQ059399.1 · 29,209–29,298 bp · +
trnT-GGU · PQ059399.1 · 31,938–32,009 bp · +
psbD · PQ059399.1 · 33,376–34,437 bp · +
psbD · PQ059399.1 · 35,844–36,905 bp · +
psbC · PQ059399.1 · 36,853–38,274 bp · +
psbZ · PQ059399.1 · 38,929–39,117 bp · +
trnG-GCC · PQ059399.1 · 39,380–39,450 bp · +
trnS-GGA · PQ059399.1 · 48,240–48,326 bp · +
trnL-UAA · PQ059399.1 · 50,313–50,870 bp · +
trnF-GAA · PQ059399.1 · 51,176–51,248 bp · +
trnM-CAU · PQ059399.1 · 54,863–54,935 bp · +
rbcL · PQ059399.1 · 57,783–59,246 bp · +
accD · PQ059399.1 · 59,959–61,437 bp · +
psaI · PQ059399.1 · 62,149–62,259 bp · +
ycf4 · PQ059399.1 · 62,685–63,239 bp · +
cemA · PQ059399.1 · 63,981–64,580 bp · +
petA · PQ059399.1 · 64,786–65,748 bp · +
petL · PQ059399.1 · 68,367–68,462 bp · +
petG · PQ059399.1 · 68,637–68,750 bp · +
psaJ · PQ059399.1 · 69,447–69,581 bp · +
rpl33 · PQ059399.1 · 70,046–70,246 bp · +
rps18 · PQ059399.1 · 70,421–70,747 bp · +
rps12 · PQ059399.1 · 140,262–141,052 bp · +
psbB · PQ059399.1 · 74,830–76,356 bp · +
psbT · PQ059399.1 · 76,548–76,655 bp · +
psbH · PQ059399.1 · 76,951–77,172 bp · +
petB · PQ059399.1 · 77,294–78,664 bp · +
petD · PQ059399.1 · 78,853–80,057 bp · +
ycf2 · PQ059399.1 · 88,478–95,248 bp · +
ycf15 · PQ059399.1 · 95,390–95,587 bp · +
trnV-GAC · PQ059399.1 · 101,846–101,917 bp · +
rrn16 · PQ059399.1 · 102,145–103,635 bp · +
trnI-GAU · PQ059399.1 · 103,934–104,953 bp · +
trnA-UGC · PQ059399.1 · 105,018–105,905 bp · +
rrn23 · PQ059399.1 · 106,075–108,887 bp · +
rrn4.5 · PQ059399.1 · 108,986–109,088 bp · +
rrn5 · PQ059399.1 · 109,336–109,456 bp · +
trnR-ACG · PQ059399.1 · 109,684–109,757 bp · +
rpl32 · PQ059399.1 · 114,240–114,416 bp · +
trnL-UAG · PQ059399.1 · 114,851–114,930 bp · +
ccsA · PQ059399.1 · 115,026–116,000 bp · +
trnN-GUU · PQ059399.1 · 130,145–130,216 bp · +
rps7 · PQ059399.1 · 141,106–141,573 bp · +
ndhB · PQ059399.1 · 141,902–144,059 bp · +
trnL-CAA · PQ059399.1 · 144,602–144,682 bp · +
trnI-CAU · PQ059399.1 · 152,141–152,214 bp · +
rpl23 · PQ059399.1 · 152,374–152,655 bp · +
rpl2 · PQ059399.1 · 152,674–154,156 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria dumetorum
ANNOTATED PLASTOME
PQ059399.1
154,253 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38563 77126 115690 154253 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 267 1325 1059 Locate
trnK-UUU gene − 1558 4152 2595 Locate
matK gene − 1858 3396 1539 Locate
rps16 gene − 5066 6229 1164 Locate
trnQ-UUG gene − 7327 7398 72 Locate
psbK gene + 7724 7909 186 Locate
psbI gene + 8301 8411 111 Locate
trnS-GCU gene − 8520 8607 88 Locate
trnG-UCC gene + 9292 10050 759 Locate
trnR-UCU gene + 10225 10296 72 Locate
atpA gene − 10393 11916 1524 Locate
atpF gene − 11999 13227 1229 Locate
atpH gene − 13584 13829 246 Locate
atpI gene − 14822 15565 744 Locate
rps2 gene − 15913 16623 711 Locate
rpoC2 gene − 16847 21052 4206 Locate
rpoC1 gene − 21207 24052 2846 Locate
rpoB gene − 24079 27291 3213 Locate
trnC-GCA gene + 28441 28511 71 Locate
petN gene + 29209 29298 90 Locate
psbM gene − 30329 30433 105 Locate
trnD-GUC gene − 30960 31033 74 Locate
trnY-GUA gene − 31147 31230 84 Locate
trnE-UUC gene − 31290 31362 73 Locate
trnT-GGU gene + 31938 32009 72 Locate
psbD gene + 33376 34437 1062 Locate
psbD gene + 35844 36905 1062 Locate
psbC gene + 36853 38274 1422 Locate
trnS-UGA gene − 38511 38602 92 Locate
psbZ gene + 38929 39117 189 Locate
trnG-GCC gene + 39380 39450 71 Locate
trnfM-CAU gene − 39599 39672 74 Locate
rps14 gene − 39822 40124 303 Locate
psaB gene − 40252 42456 2205 Locate
psaA gene − 42482 44734 2253 Locate
ycf3 gene − 45428 47347 1920 Locate
trnS-GGA gene + 48240 48326 87 Locate
rps4 gene − 48610 49215 606 Locate
trnT-UGU gene − 49568 49640 73 Locate
trnL-UAA gene + 50313 50870 558 Locate
trnF-GAA gene + 51176 51248 73 Locate
ndhJ gene − 51907 52383 477 Locate
ndhK gene − 52491 53168 678 Locate
ndhC gene − 53221 53583 363 Locate
trnV-UAC gene − 54029 54682 654 Locate
trnM-CAU gene + 54863 54935 73 Locate
atpE gene − 55144 55545 402 Locate
atpB gene − 55542 57038 1497 Locate
rbcL gene + 57783 59246 1464 Locate
accD gene + 59959 61437 1479 Locate
psaI gene + 62149 62259 111 Locate
ycf4 gene + 62685 63239 555 Locate
cemA gene + 63981 64580 600 Locate
petA gene + 64786 65748 963 Locate
psbJ gene − 66677 66799 123 Locate
psbL gene − 66933 67049 117 Locate
psbF gene − 67073 67192 120 Locate
psbE gene − 67207 67458 252 Locate
petL gene + 68367 68462 96 Locate
petG gene + 68637 68750 114 Locate
trnW-CCA gene − 68869 68942 74 Locate
trnP-UGG gene − 69102 69175 74 Locate
psaJ gene + 69447 69581 135 Locate
rpl33 gene + 70046 70246 201 Locate
rps18 gene + 70421 70747 327 Locate
rpl20 gene − 70983 71369 387 Locate
rps12 gene − 72168 72281 114 Locate
clpP gene − 72423 74358 1936 Locate
psbB gene + 74830 76356 1527 Locate
psbT gene + 76548 76655 108 Locate
psbN gene − 76716 76847 132 Locate
psbH gene + 76951 77172 222 Locate
petB gene + 77294 78664 1371 Locate
petD gene + 78853 80057 1205 Locate
rpoA gene − 80220 81233 1014 Locate
rps11 gene − 81305 81721 417 Locate
rpl36 gene − 81824 81937 114 Locate
infA gene − 82033 82266 234 Locate
rps8 gene − 82386 82796 411 Locate
rpl14 gene − 82967 83335 369 Locate
rpl16 gene − 83465 84713 1249 Locate
rps3 gene − 84861 85523 663 Locate
rpl22 gene − 85525 85980 456 Locate
rps19 gene − 86040 86318 279 Locate
rpl2 gene − 86374 87856 1483 Locate
rpl23 gene − 87875 88156 282 Locate
trnI-CAU gene − 88316 88389 74 Locate
ycf2 gene + 88478 95248 6771 Locate
ycf15 gene + 95390 95587 198 Locate
trnL-CAA gene − 95848 95928 81 Locate
ndhB gene − 96471 98628 2158 Locate
rps7 gene − 98957 99424 468 Locate
rps12 gene − 99478 100268 791 Locate
trnV-GAC gene + 101846 101917 72 Locate
rrn16 gene + 102145 103635 1491 Locate
trnI-GAU gene + 103934 104953 1020 Locate
trnA-UGC gene + 105018 105905 888 Locate
rrn23 gene + 106075 108887 2813 Locate
rrn4.5 gene + 108986 109088 103 Locate
rrn5 gene + 109336 109456 121 Locate
trnR-ACG gene + 109684 109757 74 Locate
trnN-GUU gene − 110314 110385 72 Locate
ndhF gene − 111468 113720 2253 Locate
rpl32 gene + 114240 114416 177 Locate
trnL-UAG gene + 114851 114930 80 Locate
ccsA gene + 115026 116000 975 Locate
ndhD gene − 116235 117764 1530 Locate
psaC gene − 117863 118108 246 Locate
ndhE gene − 118372 118677 306 Locate
ndhG gene − 118899 119429 531 Locate
ndhI gene − 119793 120293 501 Locate
ndhA gene − 120374 122471 2098 Locate
ndhH gene − 122473 123654 1182 Locate
rps15 gene − 123751 124023 273 Locate
ycf1 gene − 124293 129926 5634 Locate
trnN-GUU gene + 130145 130216 72 Locate
trnR-ACG gene − 130773 130846 74 Locate
rrn5 gene − 131074 131194 121 Locate
rrn4.5 gene − 131442 131544 103 Locate
rrn23 gene − 131643 134455 2813 Locate
trnA-UGC gene − 134625 135512 888 Locate
trnI-GAU gene − 135577 136596 1020 Locate
ycf68 gene − 136148 136441 294 Locate
rrn16 gene − 136895 138385 1491 Locate
trnV-GAC gene − 138613 138684 72 Locate
rps12 gene + 140262 141052 791 Locate
rps7 gene + 141106 141573 468 Locate
ndhB gene + 141902 144059 2158 Locate
trnL-CAA gene + 144602 144682 81 Locate
ycf15 gene − 144943 145140 198 Locate
ycf2 gene − 145282 152052 6771 Locate
trnI-CAU gene + 152141 152214 74 Locate
rpl23 gene + 152374 152655 282 Locate
rpl2 gene + 152674 154156 1483 Locate
Status Available
Accession PQ059399.1
Length 154,253 bp
GC content 38.5%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 16 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources