Scutellaria edelbergii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059226.1 · 10–83 bp · −
psbA · PQ059226.1 · 380–1,438 bp · −
trnK-UUU · PQ059226.1 · 1,681–4,255 bp · −
matK · PQ059226.1 · 1,963–3,489 bp · −
rps16 · PQ059226.1 · 5,157–6,318 bp · −
trnQ-UUG · PQ059226.1 · 7,472–7,543 bp · −
trnS-GCU · PQ059226.1 · 8,670–8,757 bp · −
atpA · PQ059226.1 · 10,569–12,092 bp · −
atpF · PQ059226.1 · 12,175–13,404 bp · −
atpH · PQ059226.1 · 13,767–14,012 bp · −
atpI · PQ059226.1 · 15,000–15,743 bp · −
rps2 · PQ059226.1 · 16,089–16,799 bp · −
rpoC2 · PQ059226.1 · 17,015–21,220 bp · −
rpoC1 · PQ059226.1 · 21,375–24,208 bp · −
rpoB · PQ059226.1 · 24,235–27,447 bp · −
psbM · PQ059226.1 · 30,549–30,653 bp · −
trnD-GUC · PQ059226.1 · 31,179–31,252 bp · −
trnY-GUA · PQ059226.1 · 31,366–31,449 bp · −
trnE-UUC · PQ059226.1 · 31,509–31,581 bp · −
trnS-UGA · PQ059226.1 · 36,200–36,291 bp · −
trnfM-CAU · PQ059226.1 · 37,286–37,359 bp · −
rps14 · PQ059226.1 · 37,514–37,816 bp · −
psaB · PQ059226.1 · 37,944–40,148 bp · −
psaA · PQ059226.1 · 40,174–42,426 bp · −
ycf3 · PQ059226.1 · 43,126–45,048 bp · −
rps4 · PQ059226.1 · 46,299–46,904 bp · −
trnT-UGU · PQ059226.1 · 47,258–47,330 bp · −
ndhJ · PQ059226.1 · 49,599–50,075 bp · −
ndhK · PQ059226.1 · 50,184–50,861 bp · −
ndhC · PQ059226.1 · 50,915–51,277 bp · −
trnV-UAC · PQ059226.1 · 52,254–52,906 bp · −
atpE · PQ059226.1 · 53,361–53,762 bp · −
atpB · PQ059226.1 · 53,759–55,255 bp · −
psbJ · PQ059226.1 · 65,003–65,125 bp · −
psbL · PQ059226.1 · 65,259–65,375 bp · −
psbF · PQ059226.1 · 65,399–65,518 bp · −
psbE · PQ059226.1 · 65,533–65,784 bp · −
trnW-CCA · PQ059226.1 · 67,165–67,238 bp · −
trnP-UGG · PQ059226.1 · 67,408–67,481 bp · −
rpl20 · PQ059226.1 · 69,277–69,663 bp · −
rps12 · PQ059226.1 · 70,458–70,571 bp · −
rps12 · PQ059226.1 · 97,714–98,504 bp · −
clpP · PQ059226.1 · 70,713–72,642 bp · −
psbN · PQ059226.1 · 74,979–75,110 bp · −
rpoA · PQ059226.1 · 78,673–79,473 bp · −
rps11 · PQ059226.1 · 79,545–79,961 bp · −
rpl36 · PQ059226.1 · 80,063–80,176 bp · −
infA · PQ059226.1 · 80,271–80,504 bp · −
rps8 · PQ059226.1 · 80,627–81,037 bp · −
rpl14 · PQ059226.1 · 81,189–81,557 bp · −
rpl16 · PQ059226.1 · 81,684–82,917 bp · −
rps3 · PQ059226.1 · 83,073–83,735 bp · −
rpl22 · PQ059226.1 · 83,737–84,192 bp · −
rps19 · PQ059226.1 · 84,252–84,530 bp · −
rpl2 · PQ059226.1 · 84,585–86,066 bp · −
rpl23 · PQ059226.1 · 86,085–86,366 bp · −
trnI-CAU · PQ059226.1 · 86,526–86,599 bp · −
trnL-CAA · PQ059226.1 · 94,084–94,164 bp · −
ndhB · PQ059226.1 · 94,707–96,864 bp · −
rps7 · PQ059226.1 · 97,193–97,660 bp · −
trnN-GUU · PQ059226.1 · 108,536–108,607 bp · −
ndhF · PQ059226.1 · 109,664–111,925 bp · −
ndhD · PQ059226.1 · 114,278–115,807 bp · −
psaC · PQ059226.1 · 115,909–116,154 bp · −
ndhE · PQ059226.1 · 116,406–116,711 bp · −
ndhG · PQ059226.1 · 116,928–117,458 bp · −
ndhI · PQ059226.1 · 117,825–118,325 bp · −
ndhA · PQ059226.1 · 118,406–120,527 bp · −
ndhH · PQ059226.1 · 120,529–121,710 bp · −
rps15 · PQ059226.1 · 121,807–122,079 bp · −
ycf1 · PQ059226.1 · 122,275–127,911 bp · −
trnR-ACG · PQ059226.1 · 128,750–128,823 bp · −
rrn5 · PQ059226.1 · 129,058–129,178 bp · −
rrn4.5 · PQ059226.1 · 129,426–129,528 bp · −
rrn23 · PQ059226.1 · 129,627–132,438 bp · −
trnA-UGC · PQ059226.1 · 132,608–133,489 bp · −
trnI-GAU · PQ059226.1 · 133,554–134,574 bp · −
ycf68 · PQ059226.1 · 134,126–134,419 bp · −
rrn16 · PQ059226.1 · 134,873–136,363 bp · −
trnV-GAC · PQ059226.1 · 136,590–136,661 bp · −
ycf15 · PQ059226.1 · 142,913–143,110 bp · −
ycf2 · PQ059226.1 · 143,252–150,049 bp · −
psbK · PQ059226.1 · 7,868–8,053 bp · +
psbI · PQ059226.1 · 8,441–8,551 bp · +
trnG-UCC · PQ059226.1 · 9,470–10,226 bp · +
trnR-UCU · PQ059226.1 · 10,401–10,472 bp · +
trnC-GCA · PQ059226.1 · 28,608–28,678 bp · +
petN · PQ059226.1 · 29,399–29,488 bp · +
trnT-GGU · PQ059226.1 · 32,157–32,228 bp · +
psbD · PQ059226.1 · 33,533–34,594 bp · +
psbC · PQ059226.1 · 34,542–35,963 bp · +
psbZ · PQ059226.1 · 36,607–36,795 bp · +
trnG-GCC · PQ059226.1 · 37,069–37,139 bp · +
trnS-GGA · PQ059226.1 · 45,937–46,023 bp · +
trnL-UAA · PQ059226.1 · 48,015–48,573 bp · +
trnF-GAA · PQ059226.1 · 48,879–48,951 bp · +
trnM-CAU · PQ059226.1 · 53,095–53,167 bp · +
rbcL · PQ059226.1 · 56,007–57,470 bp · +
accD · PQ059226.1 · 58,195–59,673 bp · +
psaI · PQ059226.1 · 60,379–60,489 bp · +
ycf4 · PQ059226.1 · 60,923–61,477 bp · +
cemA · PQ059226.1 · 62,226–62,825 bp · +
petA · PQ059226.1 · 63,033–63,995 bp · +
petL · PQ059226.1 · 66,660–66,755 bp · +
petG · PQ059226.1 · 66,933–67,046 bp · +
psaJ · PQ059226.1 · 67,753–67,887 bp · +
rpl33 · PQ059226.1 · 68,363–68,563 bp · +
rps18 · PQ059226.1 · 68,738–69,043 bp · +
rps12 · PQ059226.1 · 138,233–139,023 bp · +
psbB · PQ059226.1 · 73,094–74,620 bp · +
psbT · PQ059226.1 · 74,811–74,918 bp · +
psbH · PQ059226.1 · 75,214–75,435 bp · +
petB · PQ059226.1 · 75,560–76,930 bp · +
petD · PQ059226.1 · 77,113–78,318 bp · +
ycf2 · PQ059226.1 · 86,688–93,485 bp · +
ycf15 · PQ059226.1 · 93,627–93,824 bp · +
trnV-GAC · PQ059226.1 · 100,076–100,147 bp · +
rrn16 · PQ059226.1 · 100,374–101,864 bp · +
trnI-GAU · PQ059226.1 · 102,163–103,183 bp · +
trnA-UGC · PQ059226.1 · 103,248–104,129 bp · +
rrn23 · PQ059226.1 · 104,299–107,110 bp · +
rrn4.5 · PQ059226.1 · 107,209–107,311 bp · +
rrn5 · PQ059226.1 · 107,559–107,679 bp · +
trnR-ACG · PQ059226.1 · 107,914–107,987 bp · +
rpl32 · PQ059226.1 · 112,253–112,429 bp · +
trnL-UAG · PQ059226.1 · 112,878–112,957 bp · +
ccsA · PQ059226.1 · 113,047–114,021 bp · +
trnN-GUU · PQ059226.1 · 128,130–128,201 bp · +
rps7 · PQ059226.1 · 139,077–139,544 bp · +
ndhB · PQ059226.1 · 139,873–142,030 bp · +
trnL-CAA · PQ059226.1 · 142,573–142,653 bp · +
trnI-CAU · PQ059226.1 · 150,138–150,211 bp · +
rpl23 · PQ059226.1 · 150,371–150,652 bp · +
rpl2 · PQ059226.1 · 150,671–152,152 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria edelbergii
ANNOTATED PLASTOME
PQ059226.1
152,252 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38063 76126 114189 152252 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1681 4255 2575 Locate
matK gene − 1963 3489 1527 Locate
rps16 gene − 5157 6318 1162 Locate
trnQ-UUG gene − 7472 7543 72 Locate
psbK gene + 7868 8053 186 Locate
psbI gene + 8441 8551 111 Locate
trnS-GCU gene − 8670 8757 88 Locate
trnG-UCC gene + 9470 10226 757 Locate
trnR-UCU gene + 10401 10472 72 Locate
atpA gene − 10569 12092 1524 Locate
atpF gene − 12175 13404 1230 Locate
atpH gene − 13767 14012 246 Locate
atpI gene − 15000 15743 744 Locate
rps2 gene − 16089 16799 711 Locate
rpoC2 gene − 17015 21220 4206 Locate
rpoC1 gene − 21375 24208 2834 Locate
rpoB gene − 24235 27447 3213 Locate
trnC-GCA gene + 28608 28678 71 Locate
petN gene + 29399 29488 90 Locate
psbM gene − 30549 30653 105 Locate
trnD-GUC gene − 31179 31252 74 Locate
trnY-GUA gene − 31366 31449 84 Locate
trnE-UUC gene − 31509 31581 73 Locate
trnT-GGU gene + 32157 32228 72 Locate
psbD gene + 33533 34594 1062 Locate
psbC gene + 34542 35963 1422 Locate
trnS-UGA gene − 36200 36291 92 Locate
psbZ gene + 36607 36795 189 Locate
trnG-GCC gene + 37069 37139 71 Locate
trnfM-CAU gene − 37286 37359 74 Locate
rps14 gene − 37514 37816 303 Locate
psaB gene − 37944 40148 2205 Locate
psaA gene − 40174 42426 2253 Locate
ycf3 gene − 43126 45048 1923 Locate
trnS-GGA gene + 45937 46023 87 Locate
rps4 gene − 46299 46904 606 Locate
trnT-UGU gene − 47258 47330 73 Locate
trnL-UAA gene + 48015 48573 559 Locate
trnF-GAA gene + 48879 48951 73 Locate
ndhJ gene − 49599 50075 477 Locate
ndhK gene − 50184 50861 678 Locate
ndhC gene − 50915 51277 363 Locate
trnV-UAC gene − 52254 52906 653 Locate
trnM-CAU gene + 53095 53167 73 Locate
atpE gene − 53361 53762 402 Locate
atpB gene − 53759 55255 1497 Locate
rbcL gene + 56007 57470 1464 Locate
accD gene + 58195 59673 1479 Locate
psaI gene + 60379 60489 111 Locate
ycf4 gene + 60923 61477 555 Locate
cemA gene + 62226 62825 600 Locate
petA gene + 63033 63995 963 Locate
psbJ gene − 65003 65125 123 Locate
psbL gene − 65259 65375 117 Locate
psbF gene − 65399 65518 120 Locate
psbE gene − 65533 65784 252 Locate
petL gene + 66660 66755 96 Locate
petG gene + 66933 67046 114 Locate
trnW-CCA gene − 67165 67238 74 Locate
trnP-UGG gene − 67408 67481 74 Locate
psaJ gene + 67753 67887 135 Locate
rpl33 gene + 68363 68563 201 Locate
rps18 gene + 68738 69043 306 Locate
rpl20 gene − 69277 69663 387 Locate
rps12 gene − 70458 70571 114 Locate
clpP gene − 70713 72642 1930 Locate
psbB gene + 73094 74620 1527 Locate
psbT gene + 74811 74918 108 Locate
psbN gene − 74979 75110 132 Locate
psbH gene + 75214 75435 222 Locate
petB gene + 75560 76930 1371 Locate
petD gene + 77113 78318 1206 Locate
rpoA gene − 78673 79473 801 Locate
rps11 gene − 79545 79961 417 Locate
rpl36 gene − 80063 80176 114 Locate
infA gene − 80271 80504 234 Locate
rps8 gene − 80627 81037 411 Locate
rpl14 gene − 81189 81557 369 Locate
rpl16 gene − 81684 82917 1234 Locate
rps3 gene − 83073 83735 663 Locate
rpl22 gene − 83737 84192 456 Locate
rps19 gene − 84252 84530 279 Locate
rpl2 gene − 84585 86066 1482 Locate
rpl23 gene − 86085 86366 282 Locate
trnI-CAU gene − 86526 86599 74 Locate
ycf2 gene + 86688 93485 6798 Locate
ycf15 gene + 93627 93824 198 Locate
trnL-CAA gene − 94084 94164 81 Locate
ndhB gene − 94707 96864 2158 Locate
rps7 gene − 97193 97660 468 Locate
rps12 gene − 97714 98504 791 Locate
trnV-GAC gene + 100076 100147 72 Locate
rrn16 gene + 100374 101864 1491 Locate
trnI-GAU gene + 102163 103183 1021 Locate
trnA-UGC gene + 103248 104129 882 Locate
rrn23 gene + 104299 107110 2812 Locate
rrn4.5 gene + 107209 107311 103 Locate
rrn5 gene + 107559 107679 121 Locate
trnR-ACG gene + 107914 107987 74 Locate
trnN-GUU gene − 108536 108607 72 Locate
ndhF gene − 109664 111925 2262 Locate
rpl32 gene + 112253 112429 177 Locate
trnL-UAG gene + 112878 112957 80 Locate
ccsA gene + 113047 114021 975 Locate
ndhD gene − 114278 115807 1530 Locate
psaC gene − 115909 116154 246 Locate
ndhE gene − 116406 116711 306 Locate
ndhG gene − 116928 117458 531 Locate
ndhI gene − 117825 118325 501 Locate
ndhA gene − 118406 120527 2122 Locate
ndhH gene − 120529 121710 1182 Locate
rps15 gene − 121807 122079 273 Locate
ycf1 gene − 122275 127911 5637 Locate
trnN-GUU gene + 128130 128201 72 Locate
trnR-ACG gene − 128750 128823 74 Locate
rrn5 gene − 129058 129178 121 Locate
rrn4.5 gene − 129426 129528 103 Locate
rrn23 gene − 129627 132438 2812 Locate
trnA-UGC gene − 132608 133489 882 Locate
trnI-GAU gene − 133554 134574 1021 Locate
ycf68 gene − 134126 134419 294 Locate
rrn16 gene − 134873 136363 1491 Locate
trnV-GAC gene − 136590 136661 72 Locate
rps12 gene + 138233 139023 791 Locate
rps7 gene + 139077 139544 468 Locate
ndhB gene + 139873 142030 2158 Locate
trnL-CAA gene + 142573 142653 81 Locate
ycf15 gene − 142913 143110 198 Locate
ycf2 gene − 143252 150049 6798 Locate
trnI-CAU gene + 150138 150211 74 Locate
rpl23 gene + 150371 150652 282 Locate
rpl2 gene + 150671 152152 1482 Locate
Status Available
Accession PQ059226.1
Length 152,252 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources