Scutellaria elliptica var. hirsuta chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059304.1 · 2–75 bp · −
psbA · PQ059304.1 · 379–1,437 bp · −
trnK-UUU · PQ059304.1 · 1,680–4,274 bp · −
matK · PQ059304.1 · 1,981–3,516 bp · −
rps16 · PQ059304.1 · 5,176–6,335 bp · −
trnQ-UUG · PQ059304.1 · 7,428–7,499 bp · −
trnS-GCU · PQ059304.1 · 8,621–8,708 bp · −
atpA · PQ059304.1 · 10,492–12,015 bp · −
atpF · PQ059304.1 · 12,088–13,321 bp · −
atpH · PQ059304.1 · 13,684–13,929 bp · −
atpI · PQ059304.1 · 14,919–15,662 bp · −
rps2 · PQ059304.1 · 16,002–16,712 bp · −
rpoC2 · PQ059304.1 · 16,935–21,128 bp · −
rpoC1 · PQ059304.1 · 21,283–24,082 bp · −
rpoB · PQ059304.1 · 24,109–27,321 bp · −
psbM · PQ059304.1 · 30,354–30,458 bp · −
trnD-GUC · PQ059304.1 · 30,988–31,061 bp · −
trnY-GUA · PQ059304.1 · 31,181–31,264 bp · −
trnE-UUC · PQ059304.1 · 31,324–31,396 bp · −
trnS-UGA · PQ059304.1 · 36,014–36,105 bp · −
trnfM-CAU · PQ059304.1 · 37,113–37,186 bp · −
rps14 · PQ059304.1 · 37,336–37,638 bp · −
psaB · PQ059304.1 · 37,766–39,970 bp · −
psaA · PQ059304.1 · 39,995–42,247 bp · −
ycf3 · PQ059304.1 · 42,943–44,854 bp · −
rps4 · PQ059304.1 · 45,565–46,170 bp · −
trnT-UGU · PQ059304.1 · 46,509–46,581 bp · −
ndhJ · PQ059304.1 · 48,809–49,285 bp · −
ndhK · PQ059304.1 · 49,393–50,070 bp · −
ndhC · PQ059304.1 · 50,123–50,485 bp · −
trnV-UAC · PQ059304.1 · 51,473–52,125 bp · −
atpE · PQ059304.1 · 52,589–52,990 bp · −
atpB · PQ059304.1 · 52,987–54,483 bp · −
psbJ · PQ059304.1 · 64,220–64,342 bp · −
psbL · PQ059304.1 · 64,477–64,698 bp · −
psbF · PQ059304.1 · 64,617–64,736 bp · −
psbE · PQ059304.1 · 64,751–65,002 bp · −
trnW-CCA · PQ059304.1 · 66,413–66,486 bp · −
trnP-UGG · PQ059304.1 · 66,650–66,723 bp · −
rpl20 · PQ059304.1 · 68,513–68,899 bp · −
rps12 · PQ059304.1 · 69,684–69,809 bp · −
rps12 · PQ059304.1 · 96,985–97,775 bp · −
clpP · PQ059304.1 · 69,951–71,880 bp · −
psbN · PQ059304.1 · 74,225–74,356 bp · −
rpoA · PQ059304.1 · 77,733–78,746 bp · −
rps11 · PQ059304.1 · 78,818–79,234 bp · −
rpl36 · PQ059304.1 · 79,336–79,449 bp · −
infA · PQ059304.1 · 79,545–79,778 bp · −
rps8 · PQ059304.1 · 79,899–80,309 bp · −
rpl14 · PQ059304.1 · 80,468–80,836 bp · −
rpl16 · PQ059304.1 · 80,963–82,206 bp · −
rps3 · PQ059304.1 · 82,361–83,023 bp · −
rpl22 · PQ059304.1 · 83,025–83,480 bp · −
rps19 · PQ059304.1 · 83,545–83,823 bp · −
rpl2 · PQ059304.1 · 83,880–85,362 bp · −
rpl23 · PQ059304.1 · 85,381–85,662 bp · −
trnI-CAU · PQ059304.1 · 85,822–85,895 bp · −
trnL-CAA · PQ059304.1 · 93,364–93,444 bp · −
ndhB · PQ059304.1 · 93,987–96,135 bp · −
rps7 · PQ059304.1 · 96,464–96,931 bp · −
trnN-GUU · PQ059304.1 · 107,786–107,857 bp · −
ndhF · PQ059304.1 · 108,934–111,174 bp · −
ndhD · PQ059304.1 · 113,690–115,192 bp · −
psaC · PQ059304.1 · 115,319–115,564 bp · −
ndhE · PQ059304.1 · 115,816–116,121 bp · −
ndhG · PQ059304.1 · 116,352–116,882 bp · −
ndhI · PQ059304.1 · 117,247–117,747 bp · −
ndhA · PQ059304.1 · 117,828–119,925 bp · −
ndhH · PQ059304.1 · 119,927–121,108 bp · −
rps15 · PQ059304.1 · 121,205–121,477 bp · −
ycf1 · PQ059304.1 · 121,751–127,297 bp · −
trnR-ACG · PQ059304.1 · 128,135–128,208 bp · −
rrn5 · PQ059304.1 · 128,433–128,553 bp · −
rrn4.5 · PQ059304.1 · 128,801–128,903 bp · −
rrn23 · PQ059304.1 · 129,002–131,814 bp · −
trnA-UGC · PQ059304.1 · 131,977–132,864 bp · −
trnI-GAU · PQ059304.1 · 132,929–133,949 bp · −
ycf68 · PQ059304.1 · 133,555–133,794 bp · −
rrn16 · PQ059304.1 · 134,239–135,729 bp · −
trnV-GAC · PQ059304.1 · 135,957–136,028 bp · −
ycf15 · PQ059304.1 · 142,270–142,518 bp · −
ycf2 · PQ059304.1 · 142,601–149,389 bp · −
psbK · PQ059304.1 · 7,833–8,018 bp · +
psbI · PQ059304.1 · 8,401–8,511 bp · +
trnG-UCC · PQ059304.1 · 9,382–10,143 bp · +
trnR-UCU · PQ059304.1 · 10,318–10,389 bp · +
trnC-GCA · PQ059304.1 · 28,482–28,552 bp · +
petN · PQ059304.1 · 29,264–29,353 bp · +
trnT-GGU · PQ059304.1 · 31,980–32,051 bp · +
psbD · PQ059304.1 · 33,344–34,405 bp · +
psbC · PQ059304.1 · 34,353–35,774 bp · +
psbZ · PQ059304.1 · 36,425–36,613 bp · +
trnG-GCC · PQ059304.1 · 36,889–36,959 bp · +
trnS-GGA · PQ059304.1 · 45,195–45,281 bp · +
trnL-UAA · PQ059304.1 · 47,215–47,779 bp · +
trnF-GAA · PQ059304.1 · 48,085–48,157 bp · +
trnM-CAU · PQ059304.1 · 52,306–52,378 bp · +
rbcL · PQ059304.1 · 55,229–56,692 bp · +
accD · PQ059304.1 · 57,404–58,882 bp · +
psaI · PQ059304.1 · 59,577–59,687 bp · +
ycf4 · PQ059304.1 · 60,114–60,668 bp · +
cemA · PQ059304.1 · 61,409–62,008 bp · +
petA · PQ059304.1 · 62,215–63,177 bp · +
petL · PQ059304.1 · 65,910–66,005 bp · +
petG · PQ059304.1 · 66,181–66,294 bp · +
psaJ · PQ059304.1 · 66,992–67,126 bp · +
rpl33 · PQ059304.1 · 67,598–67,798 bp · +
rps18 · PQ059304.1 · 67,972–68,277 bp · +
rps12 · PQ059304.1 · 137,598–138,388 bp · +
psbB · PQ059304.1 · 72,332–73,858 bp · +
psbT · PQ059304.1 · 74,050–74,151 bp · +
psbH · PQ059304.1 · 74,460–74,681 bp · +
petB · PQ059304.1 · 74,806–76,176 bp · +
petD · PQ059304.1 · 76,365–77,570 bp · +
ycf2 · PQ059304.1 · 85,984–92,772 bp · +
ycf15 · PQ059304.1 · 92,855–93,103 bp · +
trnV-GAC · PQ059304.1 · 99,345–99,416 bp · +
rrn16 · PQ059304.1 · 99,644–101,134 bp · +
trnI-GAU · PQ059304.1 · 101,424–102,444 bp · +
trnA-UGC · PQ059304.1 · 102,509–103,396 bp · +
rrn23 · PQ059304.1 · 103,559–106,371 bp · +
rrn4.5 · PQ059304.1 · 106,470–106,572 bp · +
rrn5 · PQ059304.1 · 106,820–106,940 bp · +
trnR-ACG · PQ059304.1 · 107,165–107,238 bp · +
rpl32 · PQ059304.1 · 111,696–111,872 bp · +
trnL-UAG · PQ059304.1 · 112,308–112,387 bp · +
ccsA · PQ059304.1 · 112,481–113,455 bp · +
trnN-GUU · PQ059304.1 · 127,516–127,587 bp · +
rps7 · PQ059304.1 · 138,442–138,909 bp · +
ndhB · PQ059304.1 · 139,238–141,386 bp · +
trnL-CAA · PQ059304.1 · 141,929–142,009 bp · +
trnI-CAU · PQ059304.1 · 149,478–149,551 bp · +
rpl23 · PQ059304.1 · 149,711–149,992 bp · +
rpl2 · PQ059304.1 · 150,011–151,493 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria elliptica var. hirsuta
ANNOTATED PLASTOME
PQ059304.1
151,591 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37898 75796 113693 151591 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1680 4274 2595 Locate
matK gene − 1981 3516 1536 Locate
rps16 gene − 5176 6335 1160 Locate
trnQ-UUG gene − 7428 7499 72 Locate
psbK gene + 7833 8018 186 Locate
psbI gene + 8401 8511 111 Locate
trnS-GCU gene − 8621 8708 88 Locate
trnG-UCC gene + 9382 10143 762 Locate
trnR-UCU gene + 10318 10389 72 Locate
atpA gene − 10492 12015 1524 Locate
atpF gene − 12088 13321 1234 Locate
atpH gene − 13684 13929 246 Locate
atpI gene − 14919 15662 744 Locate
rps2 gene − 16002 16712 711 Locate
rpoC2 gene − 16935 21128 4194 Locate
rpoC1 gene − 21283 24082 2800 Locate
rpoB gene − 24109 27321 3213 Locate
trnC-GCA gene + 28482 28552 71 Locate
petN gene + 29264 29353 90 Locate
psbM gene − 30354 30458 105 Locate
trnD-GUC gene − 30988 31061 74 Locate
trnY-GUA gene − 31181 31264 84 Locate
trnE-UUC gene − 31324 31396 73 Locate
trnT-GGU gene + 31980 32051 72 Locate
psbD gene + 33344 34405 1062 Locate
psbC gene + 34353 35774 1422 Locate
trnS-UGA gene − 36014 36105 92 Locate
psbZ gene + 36425 36613 189 Locate
trnG-GCC gene + 36889 36959 71 Locate
trnfM-CAU gene − 37113 37186 74 Locate
rps14 gene − 37336 37638 303 Locate
psaB gene − 37766 39970 2205 Locate
psaA gene − 39995 42247 2253 Locate
ycf3 gene − 42943 44854 1912 Locate
trnS-GGA gene + 45195 45281 87 Locate
rps4 gene − 45565 46170 606 Locate
trnT-UGU gene − 46509 46581 73 Locate
trnL-UAA gene + 47215 47779 565 Locate
trnF-GAA gene + 48085 48157 73 Locate
ndhJ gene − 48809 49285 477 Locate
ndhK gene − 49393 50070 678 Locate
ndhC gene − 50123 50485 363 Locate
trnV-UAC gene − 51473 52125 653 Locate
trnM-CAU gene + 52306 52378 73 Locate
atpE gene − 52589 52990 402 Locate
atpB gene − 52987 54483 1497 Locate
rbcL gene + 55229 56692 1464 Locate
accD gene + 57404 58882 1479 Locate
psaI gene + 59577 59687 111 Locate
ycf4 gene + 60114 60668 555 Locate
cemA gene + 61409 62008 600 Locate
petA gene + 62215 63177 963 Locate
psbJ gene − 64220 64342 123 Locate
psbL gene − 64477 64698 222 Locate
psbF gene − 64617 64736 120 Locate
psbE gene − 64751 65002 252 Locate
petL gene + 65910 66005 96 Locate
petG gene + 66181 66294 114 Locate
trnW-CCA gene − 66413 66486 74 Locate
trnP-UGG gene − 66650 66723 74 Locate
psaJ gene + 66992 67126 135 Locate
rpl33 gene + 67598 67798 201 Locate
rps18 gene + 67972 68277 306 Locate
rpl20 gene − 68513 68899 387 Locate
rps12 gene − 69684 69809 126 Locate
clpP gene − 69951 71880 1930 Locate
psbB gene + 72332 73858 1527 Locate
psbT gene + 74050 74151 102 Locate
psbN gene − 74225 74356 132 Locate
psbH gene + 74460 74681 222 Locate
petB gene + 74806 76176 1371 Locate
petD gene + 76365 77570 1206 Locate
rpoA gene − 77733 78746 1014 Locate
rps11 gene − 78818 79234 417 Locate
rpl36 gene − 79336 79449 114 Locate
infA gene − 79545 79778 234 Locate
rps8 gene − 79899 80309 411 Locate
rpl14 gene − 80468 80836 369 Locate
rpl16 gene − 80963 82206 1244 Locate
rps3 gene − 82361 83023 663 Locate
rpl22 gene − 83025 83480 456 Locate
rps19 gene − 83545 83823 279 Locate
rpl2 gene − 83880 85362 1483 Locate
rpl23 gene − 85381 85662 282 Locate
trnI-CAU gene − 85822 85895 74 Locate
ycf2 gene + 85984 92772 6789 Locate
ycf15 gene + 92855 93103 249 Locate
trnL-CAA gene − 93364 93444 81 Locate
ndhB gene − 93987 96135 2149 Locate
rps7 gene − 96464 96931 468 Locate
rps12 gene − 96985 97775 791 Locate
trnV-GAC gene + 99345 99416 72 Locate
rrn16 gene + 99644 101134 1491 Locate
trnI-GAU gene + 101424 102444 1021 Locate
trnA-UGC gene + 102509 103396 888 Locate
rrn23 gene + 103559 106371 2813 Locate
rrn4.5 gene + 106470 106572 103 Locate
rrn5 gene + 106820 106940 121 Locate
trnR-ACG gene + 107165 107238 74 Locate
trnN-GUU gene − 107786 107857 72 Locate
ndhF gene − 108934 111174 2241 Locate
rpl32 gene + 111696 111872 177 Locate
trnL-UAG gene + 112308 112387 80 Locate
ccsA gene + 112481 113455 975 Locate
ndhD gene − 113690 115192 1503 Locate
psaC gene − 115319 115564 246 Locate
ndhE gene − 115816 116121 306 Locate
ndhG gene − 116352 116882 531 Locate
ndhI gene − 117247 117747 501 Locate
ndhA gene − 117828 119925 2098 Locate
ndhH gene − 119927 121108 1182 Locate
rps15 gene − 121205 121477 273 Locate
ycf1 gene − 121751 127297 5547 Locate
trnN-GUU gene + 127516 127587 72 Locate
trnR-ACG gene − 128135 128208 74 Locate
rrn5 gene − 128433 128553 121 Locate
rrn4.5 gene − 128801 128903 103 Locate
rrn23 gene − 129002 131814 2813 Locate
trnA-UGC gene − 131977 132864 888 Locate
trnI-GAU gene − 132929 133949 1021 Locate
ycf68 gene − 133555 133794 240 Locate
rrn16 gene − 134239 135729 1491 Locate
trnV-GAC gene − 135957 136028 72 Locate
rps12 gene + 137598 138388 791 Locate
rps7 gene + 138442 138909 468 Locate
ndhB gene + 139238 141386 2149 Locate
trnL-CAA gene + 141929 142009 81 Locate
ycf15 gene − 142270 142518 249 Locate
ycf2 gene − 142601 149389 6789 Locate
trnI-CAU gene + 149478 149551 74 Locate
rpl23 gene + 149711 149992 282 Locate
rpl2 gene + 150011 151493 1483 Locate
Status Available
Accession PQ059304.1
Length 151,591 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources