Scutellaria farsistanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059227.1 · 4–77 bp · −
psbA · PQ059227.1 · 375–1,433 bp · −
trnK-UUU · PQ059227.1 · 1,675–4,257 bp · −
matK · PQ059227.1 · 1,965–3,491 bp · −
rps16 · PQ059227.1 · 5,157–6,314 bp · −
trnQ-UUG · PQ059227.1 · 7,438–7,509 bp · −
trnS-GCU · PQ059227.1 · 8,626–8,713 bp · −
atpA · PQ059227.1 · 10,515–12,038 bp · −
atpF · PQ059227.1 · 12,120–13,349 bp · −
atpH · PQ059227.1 · 13,710–13,955 bp · −
atpI · PQ059227.1 · 14,943–15,686 bp · −
rps2 · PQ059227.1 · 16,031–16,741 bp · −
rpoC2 · PQ059227.1 · 16,955–21,160 bp · −
rpoC1 · PQ059227.1 · 21,315–24,149 bp · −
rpoB · PQ059227.1 · 24,176–27,388 bp · −
psbM · PQ059227.1 · 30,421–30,525 bp · −
trnD-GUC · PQ059227.1 · 31,051–31,124 bp · −
trnY-GUA · PQ059227.1 · 31,238–31,321 bp · −
trnE-UUC · PQ059227.1 · 31,381–31,453 bp · −
trnS-UGA · PQ059227.1 · 36,071–36,162 bp · −
trnfM-CAU · PQ059227.1 · 37,156–37,229 bp · −
rps14 · PQ059227.1 · 37,379–37,681 bp · −
psaB · PQ059227.1 · 37,810–40,014 bp · −
psaA · PQ059227.1 · 40,040–42,292 bp · −
ycf3 · PQ059227.1 · 42,988–44,910 bp · −
rps4 · PQ059227.1 · 46,162–46,767 bp · −
trnT-UGU · PQ059227.1 · 47,111–47,183 bp · −
ndhJ · PQ059227.1 · 49,455–49,931 bp · −
ndhK · PQ059227.1 · 50,040–50,717 bp · −
ndhC · PQ059227.1 · 50,771–51,133 bp · −
trnV-UAC · PQ059227.1 · 52,118–52,770 bp · −
atpE · PQ059227.1 · 53,225–53,626 bp · −
atpB · PQ059227.1 · 53,623–55,119 bp · −
psbJ · PQ059227.1 · 64,865–64,987 bp · −
psbL · PQ059227.1 · 65,121–65,342 bp · −
psbF · PQ059227.1 · 65,261–65,380 bp · −
psbE · PQ059227.1 · 65,395–65,646 bp · −
trnW-CCA · PQ059227.1 · 67,023–67,096 bp · −
trnP-UGG · PQ059227.1 · 67,266–67,339 bp · −
rpl20 · PQ059227.1 · 69,135–69,521 bp · −
rps12 · PQ059227.1 · 70,300–70,425 bp · −
rps12 · PQ059227.1 · 97,574–98,364 bp · −
clpP · PQ059227.1 · 70,566–72,492 bp · −
psbN · PQ059227.1 · 74,836–74,967 bp · −
rpoA · PQ059227.1 · 78,527–79,327 bp · −
rps11 · PQ059227.1 · 79,399–79,815 bp · −
rpl36 · PQ059227.1 · 79,917–80,030 bp · −
infA · PQ059227.1 · 80,125–80,358 bp · −
rps8 · PQ059227.1 · 80,482–80,892 bp · −
rpl14 · PQ059227.1 · 81,045–81,413 bp · −
rpl16 · PQ059227.1 · 81,540–82,766 bp · −
rps3 · PQ059227.1 · 82,922–83,584 bp · −
rpl22 · PQ059227.1 · 83,586–84,041 bp · −
rps19 · PQ059227.1 · 84,101–84,379 bp · −
rpl2 · PQ059227.1 · 84,433–85,914 bp · −
rpl23 · PQ059227.1 · 85,933–86,214 bp · −
trnI-CAU · PQ059227.1 · 86,374–86,447 bp · −
trnL-CAA · PQ059227.1 · 93,944–94,024 bp · −
ndhB · PQ059227.1 · 94,567–96,724 bp · −
rps7 · PQ059227.1 · 97,053–97,520 bp · −
trnN-GUU · PQ059227.1 · 108,398–108,469 bp · −
ndhF · PQ059227.1 · 109,526–111,787 bp · −
ndhD · PQ059227.1 · 114,149–115,678 bp · −
psaC · PQ059227.1 · 115,780–116,025 bp · −
ndhE · PQ059227.1 · 116,274–116,579 bp · −
ndhG · PQ059227.1 · 116,796–117,326 bp · −
ndhI · PQ059227.1 · 117,692–118,192 bp · −
ndhA · PQ059227.1 · 118,273–120,394 bp · −
ndhH · PQ059227.1 · 120,396–121,607 bp · −
rps15 · PQ059227.1 · 121,674–121,946 bp · −
ycf1 · PQ059227.1 · 122,142–127,778 bp · −
trnR-ACG · PQ059227.1 · 128,617–128,690 bp · −
rrn5 · PQ059227.1 · 128,925–129,045 bp · −
rrn4.5 · PQ059227.1 · 129,293–129,395 bp · −
rrn23 · PQ059227.1 · 129,494–132,305 bp · −
trnA-UGC · PQ059227.1 · 132,475–133,358 bp · −
trnI-GAU · PQ059227.1 · 133,423–134,443 bp · −
ycf68 · PQ059227.1 · 133,995–134,288 bp · −
rrn16 · PQ059227.1 · 134,742–136,232 bp · −
trnV-GAC · PQ059227.1 · 136,459–136,530 bp · −
ycf15 · PQ059227.1 · 142,782–142,979 bp · −
ycf2 · PQ059227.1 · 143,121–149,930 bp · −
psbK · PQ059227.1 · 7,834–8,019 bp · +
psbI · PQ059227.1 · 8,398–8,508 bp · +
trnG-UCC · PQ059227.1 · 9,416–10,172 bp · +
trnR-UCU · PQ059227.1 · 10,347–10,418 bp · +
trnC-GCA · PQ059227.1 · 28,549–28,619 bp · +
petN · PQ059227.1 · 29,333–29,422 bp · +
trnT-GGU · PQ059227.1 · 32,029–32,100 bp · +
psbD · PQ059227.1 · 33,405–34,466 bp · +
psbC · PQ059227.1 · 34,414–35,835 bp · +
psbZ · PQ059227.1 · 36,478–36,666 bp · +
trnG-GCC · PQ059227.1 · 36,941–37,011 bp · +
trnS-GGA · PQ059227.1 · 45,800–45,886 bp · +
trnL-UAA · PQ059227.1 · 47,868–48,427 bp · +
trnF-GAA · PQ059227.1 · 48,734–48,806 bp · +
trnM-CAU · PQ059227.1 · 52,959–53,031 bp · +
rbcL · PQ059227.1 · 55,871–57,334 bp · +
accD · PQ059227.1 · 58,059–59,537 bp · +
psaI · PQ059227.1 · 60,244–60,354 bp · +
ycf4 · PQ059227.1 · 60,788–61,342 bp · +
cemA · PQ059227.1 · 62,091–62,690 bp · +
petA · PQ059227.1 · 62,897–63,859 bp · +
petL · PQ059227.1 · 66,521–66,616 bp · +
petG · PQ059227.1 · 66,791–66,904 bp · +
psaJ · PQ059227.1 · 67,548–67,745 bp · +
rpl33 · PQ059227.1 · 68,220–68,420 bp · +
rps18 · PQ059227.1 · 68,595–68,900 bp · +
rps12 · PQ059227.1 · 138,102–138,892 bp · +
psbB · PQ059227.1 · 72,951–74,477 bp · +
psbT · PQ059227.1 · 74,668–74,775 bp · +
psbH · PQ059227.1 · 75,071–75,292 bp · +
petB · PQ059227.1 · 75,417–76,791 bp · +
petD · PQ059227.1 · 76,974–78,172 bp · +
ycf2 · PQ059227.1 · 86,536–93,345 bp · +
ycf15 · PQ059227.1 · 93,487–93,684 bp · +
trnV-GAC · PQ059227.1 · 99,936–100,007 bp · +
rrn16 · PQ059227.1 · 100,234–101,724 bp · +
trnI-GAU · PQ059227.1 · 102,023–103,043 bp · +
trnA-UGC · PQ059227.1 · 103,108–103,991 bp · +
rrn23 · PQ059227.1 · 104,161–106,972 bp · +
rrn4.5 · PQ059227.1 · 107,071–107,173 bp · +
rrn5 · PQ059227.1 · 107,421–107,541 bp · +
trnR-ACG · PQ059227.1 · 107,776–107,849 bp · +
rpl32 · PQ059227.1 · 112,115–112,291 bp · +
trnL-UAG · PQ059227.1 · 112,740–112,819 bp · +
ccsA · PQ059227.1 · 112,919–113,893 bp · +
trnN-GUU · PQ059227.1 · 127,997–128,068 bp · +
rps7 · PQ059227.1 · 138,946–139,413 bp · +
ndhB · PQ059227.1 · 139,742–141,899 bp · +
trnL-CAA · PQ059227.1 · 142,442–142,522 bp · +
trnI-CAU · PQ059227.1 · 150,019–150,092 bp · +
rpl23 · PQ059227.1 · 150,252–150,533 bp · +
rpl2 · PQ059227.1 · 150,552–152,033 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria farsistanica
ANNOTATED PLASTOME
PQ059227.1
152,132 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38033 76066 114099 152132 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1675 4257 2583 Locate
matK gene − 1965 3491 1527 Locate
rps16 gene − 5157 6314 1158 Locate
trnQ-UUG gene − 7438 7509 72 Locate
psbK gene + 7834 8019 186 Locate
psbI gene + 8398 8508 111 Locate
trnS-GCU gene − 8626 8713 88 Locate
trnG-UCC gene + 9416 10172 757 Locate
trnR-UCU gene + 10347 10418 72 Locate
atpA gene − 10515 12038 1524 Locate
atpF gene − 12120 13349 1230 Locate
atpH gene − 13710 13955 246 Locate
atpI gene − 14943 15686 744 Locate
rps2 gene − 16031 16741 711 Locate
rpoC2 gene − 16955 21160 4206 Locate
rpoC1 gene − 21315 24149 2835 Locate
rpoB gene − 24176 27388 3213 Locate
trnC-GCA gene + 28549 28619 71 Locate
petN gene + 29333 29422 90 Locate
psbM gene − 30421 30525 105 Locate
trnD-GUC gene − 31051 31124 74 Locate
trnY-GUA gene − 31238 31321 84 Locate
trnE-UUC gene − 31381 31453 73 Locate
trnT-GGU gene + 32029 32100 72 Locate
psbD gene + 33405 34466 1062 Locate
psbC gene + 34414 35835 1422 Locate
trnS-UGA gene − 36071 36162 92 Locate
psbZ gene + 36478 36666 189 Locate
trnG-GCC gene + 36941 37011 71 Locate
trnfM-CAU gene − 37156 37229 74 Locate
rps14 gene − 37379 37681 303 Locate
psaB gene − 37810 40014 2205 Locate
psaA gene − 40040 42292 2253 Locate
ycf3 gene − 42988 44910 1923 Locate
trnS-GGA gene + 45800 45886 87 Locate
rps4 gene − 46162 46767 606 Locate
trnT-UGU gene − 47111 47183 73 Locate
trnL-UAA gene + 47868 48427 560 Locate
trnF-GAA gene + 48734 48806 73 Locate
ndhJ gene − 49455 49931 477 Locate
ndhK gene − 50040 50717 678 Locate
ndhC gene − 50771 51133 363 Locate
trnV-UAC gene − 52118 52770 653 Locate
trnM-CAU gene + 52959 53031 73 Locate
atpE gene − 53225 53626 402 Locate
atpB gene − 53623 55119 1497 Locate
rbcL gene + 55871 57334 1464 Locate
accD gene + 58059 59537 1479 Locate
psaI gene + 60244 60354 111 Locate
ycf4 gene + 60788 61342 555 Locate
cemA gene + 62091 62690 600 Locate
petA gene + 62897 63859 963 Locate
psbJ gene − 64865 64987 123 Locate
psbL gene − 65121 65342 222 Locate
psbF gene − 65261 65380 120 Locate
psbE gene − 65395 65646 252 Locate
petL gene + 66521 66616 96 Locate
petG gene + 66791 66904 114 Locate
trnW-CCA gene − 67023 67096 74 Locate
trnP-UGG gene − 67266 67339 74 Locate
psaJ gene + 67548 67745 198 Locate
rpl33 gene + 68220 68420 201 Locate
rps18 gene + 68595 68900 306 Locate
rpl20 gene − 69135 69521 387 Locate
rps12 gene − 70300 70425 126 Locate
clpP gene − 70566 72492 1927 Locate
psbB gene + 72951 74477 1527 Locate
psbT gene + 74668 74775 108 Locate
psbN gene − 74836 74967 132 Locate
psbH gene + 75071 75292 222 Locate
petB gene + 75417 76791 1375 Locate
petD gene + 76974 78172 1199 Locate
rpoA gene − 78527 79327 801 Locate
rps11 gene − 79399 79815 417 Locate
rpl36 gene − 79917 80030 114 Locate
infA gene − 80125 80358 234 Locate
rps8 gene − 80482 80892 411 Locate
rpl14 gene − 81045 81413 369 Locate
rpl16 gene − 81540 82766 1227 Locate
rps3 gene − 82922 83584 663 Locate
rpl22 gene − 83586 84041 456 Locate
rps19 gene − 84101 84379 279 Locate
rpl2 gene − 84433 85914 1482 Locate
rpl23 gene − 85933 86214 282 Locate
trnI-CAU gene − 86374 86447 74 Locate
ycf2 gene + 86536 93345 6810 Locate
ycf15 gene + 93487 93684 198 Locate
trnL-CAA gene − 93944 94024 81 Locate
ndhB gene − 94567 96724 2158 Locate
rps7 gene − 97053 97520 468 Locate
rps12 gene − 97574 98364 791 Locate
trnV-GAC gene + 99936 100007 72 Locate
rrn16 gene + 100234 101724 1491 Locate
trnI-GAU gene + 102023 103043 1021 Locate
trnA-UGC gene + 103108 103991 884 Locate
rrn23 gene + 104161 106972 2812 Locate
rrn4.5 gene + 107071 107173 103 Locate
rrn5 gene + 107421 107541 121 Locate
trnR-ACG gene + 107776 107849 74 Locate
trnN-GUU gene − 108398 108469 72 Locate
ndhF gene − 109526 111787 2262 Locate
rpl32 gene + 112115 112291 177 Locate
trnL-UAG gene + 112740 112819 80 Locate
ccsA gene + 112919 113893 975 Locate
ndhD gene − 114149 115678 1530 Locate
psaC gene − 115780 116025 246 Locate
ndhE gene − 116274 116579 306 Locate
ndhG gene − 116796 117326 531 Locate
ndhI gene − 117692 118192 501 Locate
ndhA gene − 118273 120394 2122 Locate
ndhH gene − 120396 121607 1212 Locate
rps15 gene − 121674 121946 273 Locate
ycf1 gene − 122142 127778 5637 Locate
trnN-GUU gene + 127997 128068 72 Locate
trnR-ACG gene − 128617 128690 74 Locate
rrn5 gene − 128925 129045 121 Locate
rrn4.5 gene − 129293 129395 103 Locate
rrn23 gene − 129494 132305 2812 Locate
trnA-UGC gene − 132475 133358 884 Locate
trnI-GAU gene − 133423 134443 1021 Locate
ycf68 gene − 133995 134288 294 Locate
rrn16 gene − 134742 136232 1491 Locate
trnV-GAC gene − 136459 136530 72 Locate
rps12 gene + 138102 138892 791 Locate
rps7 gene + 138946 139413 468 Locate
ndhB gene + 139742 141899 2158 Locate
trnL-CAA gene + 142442 142522 81 Locate
ycf15 gene − 142782 142979 198 Locate
ycf2 gene − 143121 149930 6810 Locate
trnI-CAU gene + 150019 150092 74 Locate
rpl23 gene + 150252 150533 282 Locate
rpl2 gene + 150552 152033 1482 Locate
Status Available
Accession PQ059227.1
Length 152,132 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources