Scutellaria fedtschenkoi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130068.1 · 4–77 bp · −
psbA · PZ130068.1 · 384–1,442 bp · −
trnK-UUU · PZ130068.1 · 1,683–4,276 bp · −
matK · PZ130068.1 · 1,972–3,516 bp · −
rps16 · PZ130068.1 · 5,193–6,370 bp · −
trnQ-UUG · PZ130068.1 · 7,482–7,553 bp · −
trnS-GCU · PZ130068.1 · 8,674–8,761 bp · −
atpA · PZ130068.1 · 10,549–12,072 bp · −
atpF · PZ130068.1 · 12,156–13,385 bp · −
atpH · PZ130068.1 · 13,760–14,005 bp · −
atpI · PZ130068.1 · 15,005–15,748 bp · −
rps2 · PZ130068.1 · 16,077–16,913 bp · −
rpoC2 · PZ130068.1 · 17,004–21,203 bp · −
rpoC1 · PZ130068.1 · 21,358–24,185 bp · −
rpoB · PZ130068.1 · 24,212–27,424 bp · −
psbM · PZ130068.1 · 30,471–30,584 bp · −
trnD-GUC · PZ130068.1 · 31,116–31,189 bp · −
trnY-GUA · PZ130068.1 · 31,303–31,386 bp · −
trnE-UUC · PZ130068.1 · 31,446–31,518 bp · −
trnS-UGA · PZ130068.1 · 36,146–36,237 bp · −
trnfM-CAU · PZ130068.1 · 37,232–37,305 bp · −
rps14 · PZ130068.1 · 37,455–37,757 bp · −
psaB · PZ130068.1 · 37,885–40,089 bp · −
psaA · PZ130068.1 · 40,115–42,367 bp · −
ycf3 · PZ130068.1 · 43,077–45,005 bp · −
rps4 · PZ130068.1 · 46,260–46,865 bp · −
trnT-UGU · PZ130068.1 · 47,203–47,275 bp · −
ndhJ · PZ130068.1 · 49,560–50,036 bp · −
ndhK · PZ130068.1 · 50,145–50,822 bp · −
ndhC · PZ130068.1 · 50,875–51,237 bp · −
trnV-UAC · PZ130068.1 · 52,226–52,884 bp · −
atpE · PZ130068.1 · 53,346–53,747 bp · −
atpB · PZ130068.1 · 53,744–55,240 bp · −
psbJ · PZ130068.1 · 64,419–64,541 bp · −
psbL · PZ130068.1 · 64,675–64,791 bp · −
psbF · PZ130068.1 · 64,815–64,934 bp · −
psbE · PZ130068.1 · 64,949–65,200 bp · −
trnW-CCA · PZ130068.1 · 66,613–66,686 bp · −
trnP-UGG · PZ130068.1 · 66,857–66,930 bp · −
rpl20 · PZ130068.1 · 68,735–69,121 bp · −
rps12 · PZ130068.1 · 69,917–70,030 bp · −
rps12 · PZ130068.1 · 97,237–98,027 bp · −
clpP · PZ130068.1 · 70,173–72,104 bp · −
psbN · PZ130068.1 · 74,435–74,566 bp · −
rpoA · PZ130068.1 · 78,160–78,966 bp · −
rps11 · PZ130068.1 · 79,038–79,454 bp · −
rpl36 · PZ130068.1 · 79,556–79,669 bp · −
infA · PZ130068.1 · 79,765–79,998 bp · −
rps8 · PZ130068.1 · 80,121–80,531 bp · −
rpl14 · PZ130068.1 · 80,697–81,065 bp · −
rpl16 · PZ130068.1 · 81,192–82,421 bp · −
rps3 · PZ130068.1 · 82,576–83,238 bp · −
rpl22 · PZ130068.1 · 83,240–83,695 bp · −
rps19 · PZ130068.1 · 83,755–84,033 bp · −
rpl2 · PZ130068.1 · 84,088–85,570 bp · −
rpl23 · PZ130068.1 · 85,589–85,870 bp · −
trnI-CAU · PZ130068.1 · 86,030–86,103 bp · −
trnL-CAA · PZ130068.1 · 93,607–93,687 bp · −
ndhB · PZ130068.1 · 94,230–96,441 bp · −
rps7 · PZ130068.1 · 96,716–97,183 bp · −
trnN-GUU · PZ130068.1 · 108,066–108,137 bp · −
ndhF · PZ130068.1 · 109,214–111,454 bp · −
ndhD · PZ130068.1 · 113,975–115,504 bp · −
psaC · PZ130068.1 · 115,614–115,859 bp · −
ndhE · PZ130068.1 · 116,115–116,420 bp · −
ndhG · PZ130068.1 · 116,645–117,175 bp · −
ndhI · PZ130068.1 · 117,524–118,024 bp · −
ndhA · PZ130068.1 · 118,105–120,212 bp · −
ndhH · PZ130068.1 · 120,214–121,425 bp · −
rps15 · PZ130068.1 · 121,492–121,764 bp · −
ycf1 · PZ130068.1 · 122,034–127,694 bp · −
trnR-ACG · PZ130068.1 · 128,540–128,613 bp · −
rrn5 · PZ130068.1 · 128,848–128,968 bp · −
rrn4.5 · PZ130068.1 · 129,216–129,318 bp · −
rrn23 · PZ130068.1 · 129,417–132,228 bp · −
trnA-UGC · PZ130068.1 · 132,398–133,282 bp · −
trnI-GAU · PZ130068.1 · 133,347–134,367 bp · −
ycf68 · PZ130068.1 · 133,919–134,212 bp · −
rrn16 · PZ130068.1 · 134,666–136,156 bp · −
trnV-GAC · PZ130068.1 · 136,379–136,450 bp · −
ycf15 · PZ130068.1 · 142,704–142,901 bp · −
ycf2 · PZ130068.1 · 143,043–149,858 bp · −
psbK · PZ130068.1 · 7,878–8,063 bp · +
psbI · PZ130068.1 · 8,453–8,563 bp · +
trnG-UCC · PZ130068.1 · 9,461–10,214 bp · +
trnR-UCU · PZ130068.1 · 10,381–10,452 bp · +
trnC-GCA · PZ130068.1 · 28,586–28,656 bp · +
petN · PZ130068.1 · 29,386–29,475 bp · +
trnT-GGU · PZ130068.1 · 32,090–32,161 bp · +
psbD · PZ130068.1 · 33,480–34,541 bp · +
psbC · PZ130068.1 · 34,489–35,910 bp · +
psbZ · PZ130068.1 · 36,557–36,745 bp · +
trnG-GCC · PZ130068.1 · 37,017–37,087 bp · +
trnS-GGA · PZ130068.1 · 45,890–45,976 bp · +
trnL-UAA · PZ130068.1 · 47,966–48,532 bp · +
trnF-GAA · PZ130068.1 · 48,838–48,910 bp · +
trnM-CAU · PZ130068.1 · 53,065–53,137 bp · +
rbcL · PZ130068.1 · 55,986–57,449 bp · +
accD · PZ130068.1 · 58,171–59,661 bp · +
psaI · PZ130068.1 · 59,899–60,009 bp · +
ycf4 · PZ130068.1 · 60,443–60,997 bp · +
cemA · PZ130068.1 · 61,621–62,220 bp · +
petA · PZ130068.1 · 62,427–63,389 bp · +
petL · PZ130068.1 · 66,120–66,215 bp · +
petG · PZ130068.1 · 66,391–66,504 bp · +
psaJ · PZ130068.1 · 67,203–67,337 bp · +
rpl33 · PZ130068.1 · 67,814–68,014 bp · +
rps18 · PZ130068.1 · 68,189–68,494 bp · +
rps12 · PZ130068.1 · 138,023–138,813 bp · +
psbB · PZ130068.1 · 72,558–74,084 bp · +
psbT · PZ130068.1 · 74,267–74,374 bp · +
psbH · PZ130068.1 · 74,670–74,891 bp · +
petB · PZ130068.1 · 75,016–76,384 bp · +
petD · PZ130068.1 · 76,573–77,784 bp · +
ycf2 · PZ130068.1 · 86,192–93,007 bp · +
ycf15 · PZ130068.1 · 93,149–93,346 bp · +
trnV-GAC · PZ130068.1 · 99,600–99,671 bp · +
rrn16 · PZ130068.1 · 99,894–101,384 bp · +
trnI-GAU · PZ130068.1 · 101,683–102,703 bp · +
trnA-UGC · PZ130068.1 · 102,768–103,652 bp · +
rrn23 · PZ130068.1 · 103,822–106,633 bp · +
rrn4.5 · PZ130068.1 · 106,732–106,834 bp · +
rrn5 · PZ130068.1 · 107,082–107,202 bp · +
trnR-ACG · PZ130068.1 · 107,437–107,510 bp · +
rpl32 · PZ130068.1 · 111,973–112,149 bp · +
trnL-UAG · PZ130068.1 · 112,584–112,663 bp · +
ccsA · PZ130068.1 · 112,761–113,735 bp · +
trnN-GUU · PZ130068.1 · 127,913–127,984 bp · +
rps7 · PZ130068.1 · 138,867–139,334 bp · +
ndhB · PZ130068.1 · 139,609–141,820 bp · +
trnL-CAA · PZ130068.1 · 142,363–142,443 bp · +
trnI-CAU · PZ130068.1 · 149,947–150,020 bp · +
rpl23 · PZ130068.1 · 150,180–150,461 bp · +
rpl2 · PZ130068.1 · 150,480–151,962 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria fedtschenkoi
ANNOTATED PLASTOME
PZ130068.1
152,057 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38014 76028 114043 152057 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 384 1442 1059 Locate
trnK-UUU gene − 1683 4276 2594 Locate
matK gene − 1972 3516 1545 Locate
rps16 gene − 5193 6370 1178 Locate
trnQ-UUG gene − 7482 7553 72 Locate
psbK gene + 7878 8063 186 Locate
psbI gene + 8453 8563 111 Locate
trnS-GCU gene − 8674 8761 88 Locate
trnG-UCC gene + 9461 10214 754 Locate
trnR-UCU gene + 10381 10452 72 Locate
atpA gene − 10549 12072 1524 Locate
atpF gene − 12156 13385 1230 Locate
atpH gene − 13760 14005 246 Locate
atpI gene − 15005 15748 744 Locate
rps2 gene − 16077 16913 837 Locate
rpoC2 gene − 17004 21203 4200 Locate
rpoC1 gene − 21358 24185 2828 Locate
rpoB gene − 24212 27424 3213 Locate
trnC-GCA gene + 28586 28656 71 Locate
petN gene + 29386 29475 90 Locate
psbM gene − 30471 30584 114 Locate
trnD-GUC gene − 31116 31189 74 Locate
trnY-GUA gene − 31303 31386 84 Locate
trnE-UUC gene − 31446 31518 73 Locate
trnT-GGU gene + 32090 32161 72 Locate
psbD gene + 33480 34541 1062 Locate
psbC gene + 34489 35910 1422 Locate
trnS-UGA gene − 36146 36237 92 Locate
psbZ gene + 36557 36745 189 Locate
trnG-GCC gene + 37017 37087 71 Locate
trnfM-CAU gene − 37232 37305 74 Locate
rps14 gene − 37455 37757 303 Locate
psaB gene − 37885 40089 2205 Locate
psaA gene − 40115 42367 2253 Locate
ycf3 gene − 43077 45005 1929 Locate
trnS-GGA gene + 45890 45976 87 Locate
rps4 gene − 46260 46865 606 Locate
trnT-UGU gene − 47203 47275 73 Locate
trnL-UAA gene + 47966 48532 567 Locate
trnF-GAA gene + 48838 48910 73 Locate
ndhJ gene − 49560 50036 477 Locate
ndhK gene − 50145 50822 678 Locate
ndhC gene − 50875 51237 363 Locate
trnV-UAC gene − 52226 52884 659 Locate
trnM-CAU gene + 53065 53137 73 Locate
atpE gene − 53346 53747 402 Locate
atpB gene − 53744 55240 1497 Locate
rbcL gene + 55986 57449 1464 Locate
accD gene + 58171 59661 1491 Locate
psaI gene + 59899 60009 111 Locate
ycf4 gene + 60443 60997 555 Locate
cemA gene + 61621 62220 600 Locate
petA gene + 62427 63389 963 Locate
psbJ gene − 64419 64541 123 Locate
psbL gene − 64675 64791 117 Locate
psbF gene − 64815 64934 120 Locate
psbE gene − 64949 65200 252 Locate
petL gene + 66120 66215 96 Locate
petG gene + 66391 66504 114 Locate
trnW-CCA gene − 66613 66686 74 Locate
trnP-UGG gene − 66857 66930 74 Locate
psaJ gene + 67203 67337 135 Locate
rpl33 gene + 67814 68014 201 Locate
rps18 gene + 68189 68494 306 Locate
rpl20 gene − 68735 69121 387 Locate
rps12 gene − 69917 70030 114 Locate
clpP gene − 70173 72104 1932 Locate
psbB gene + 72558 74084 1527 Locate
psbT gene + 74267 74374 108 Locate
psbN gene − 74435 74566 132 Locate
psbH gene + 74670 74891 222 Locate
petB gene + 75016 76384 1369 Locate
petD gene + 76573 77784 1212 Locate
rpoA gene − 78160 78966 807 Locate
rps11 gene − 79038 79454 417 Locate
rpl36 gene − 79556 79669 114 Locate
infA gene − 79765 79998 234 Locate
rps8 gene − 80121 80531 411 Locate
rpl14 gene − 80697 81065 369 Locate
rpl16 gene − 81192 82421 1230 Locate
rps3 gene − 82576 83238 663 Locate
rpl22 gene − 83240 83695 456 Locate
rps19 gene − 83755 84033 279 Locate
rpl2 gene − 84088 85570 1483 Locate
rpl23 gene − 85589 85870 282 Locate
trnI-CAU gene − 86030 86103 74 Locate
ycf2 gene + 86192 93007 6816 Locate
ycf15 gene + 93149 93346 198 Locate
trnL-CAA gene − 93607 93687 81 Locate
ndhB gene − 94230 96441 2212 Locate
rps7 gene − 96716 97183 468 Locate
rps12 gene − 97237 98027 791 Locate
trnV-GAC gene + 99600 99671 72 Locate
rrn16 gene + 99894 101384 1491 Locate
trnI-GAU gene + 101683 102703 1021 Locate
trnA-UGC gene + 102768 103652 885 Locate
rrn23 gene + 103822 106633 2812 Locate
rrn4.5 gene + 106732 106834 103 Locate
rrn5 gene + 107082 107202 121 Locate
trnR-ACG gene + 107437 107510 74 Locate
trnN-GUU gene − 108066 108137 72 Locate
ndhF gene − 109214 111454 2241 Locate
rpl32 gene + 111973 112149 177 Locate
trnL-UAG gene + 112584 112663 80 Locate
ccsA gene + 112761 113735 975 Locate
ndhD gene − 113975 115504 1530 Locate
psaC gene − 115614 115859 246 Locate
ndhE gene − 116115 116420 306 Locate
ndhG gene − 116645 117175 531 Locate
ndhI gene − 117524 118024 501 Locate
ndhA gene − 118105 120212 2108 Locate
ndhH gene − 120214 121425 1212 Locate
rps15 gene − 121492 121764 273 Locate
ycf1 gene − 122034 127694 5661 Locate
trnN-GUU gene + 127913 127984 72 Locate
trnR-ACG gene − 128540 128613 74 Locate
rrn5 gene − 128848 128968 121 Locate
rrn4.5 gene − 129216 129318 103 Locate
rrn23 gene − 129417 132228 2812 Locate
trnA-UGC gene − 132398 133282 885 Locate
trnI-GAU gene − 133347 134367 1021 Locate
ycf68 gene − 133919 134212 294 Locate
rrn16 gene − 134666 136156 1491 Locate
trnV-GAC gene − 136379 136450 72 Locate
rps12 gene + 138023 138813 791 Locate
rps7 gene + 138867 139334 468 Locate
ndhB gene + 139609 141820 2212 Locate
trnL-CAA gene + 142363 142443 81 Locate
ycf15 gene − 142704 142901 198 Locate
ycf2 gene − 143043 149858 6816 Locate
trnI-CAU gene + 149947 150020 74 Locate
rpl23 gene + 150180 150461 282 Locate
rpl2 gene + 150480 151962 1483 Locate
Status Available
Accession PZ130068.1
Length 152,057 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources