Scutellaria flocculosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058280.1 · 7–80 bp · −
psbA · PQ058280.1 · 274–1,332 bp · −
trnK-UUU · PQ058280.1 · 1,565–4,154 bp · −
matK · PQ058280.1 · 1,860–3,398 bp · −
rps16 · PQ058280.1 · 5,043–6,212 bp · −
trnQ-UUG · PQ058280.1 · 7,298–7,369 bp · −
trnS-GCU · PQ058280.1 · 8,497–8,584 bp · −
atpA · PQ058280.1 · 10,384–11,907 bp · −
atpF · PQ058280.1 · 11,990–13,217 bp · −
atpH · PQ058280.1 · 13,580–13,825 bp · −
atpI · PQ058280.1 · 14,820–15,563 bp · −
rps2 · PQ058280.1 · 15,912–16,622 bp · −
rpoC2 · PQ058280.1 · 16,839–21,044 bp · −
rpoC1 · PQ058280.1 · 21,199–24,023 bp · −
rpoB · PQ058280.1 · 24,050–27,262 bp · −
psbM · PQ058280.1 · 30,301–30,405 bp · −
trnD-GUC · PQ058280.1 · 30,932–31,005 bp · −
trnY-GUA · PQ058280.1 · 31,119–31,202 bp · −
trnE-UUC · PQ058280.1 · 31,262–31,334 bp · −
trnS-UGA · PQ058280.1 · 35,833–35,924 bp · −
trnfM-CAU · PQ058280.1 · 36,909–36,982 bp · −
rps14 · PQ058280.1 · 37,132–37,434 bp · −
psaB · PQ058280.1 · 37,562–39,766 bp · −
psaA · PQ058280.1 · 39,792–42,044 bp · −
ycf3 · PQ058280.1 · 42,743–44,664 bp · −
rps4 · PQ058280.1 · 45,929–46,534 bp · −
trnT-UGU · PQ058280.1 · 46,869–46,941 bp · −
ndhJ · PQ058280.1 · 49,221–49,697 bp · −
ndhK · PQ058280.1 · 49,805–50,482 bp · −
ndhC · PQ058280.1 · 50,535–50,897 bp · −
trnV-UAC · PQ058280.1 · 51,351–52,004 bp · −
atpE · PQ058280.1 · 52,466–52,867 bp · −
atpB · PQ058280.1 · 52,864–54,360 bp · −
psbJ · PQ058280.1 · 64,126–64,248 bp · −
psbL · PQ058280.1 · 64,382–64,603 bp · −
psbF · PQ058280.1 · 64,522–64,641 bp · −
psbE · PQ058280.1 · 64,656–64,907 bp · −
trnW-CCA · PQ058280.1 · 66,317–66,390 bp · −
trnP-UGG · PQ058280.1 · 66,550–66,623 bp · −
rpl20 · PQ058280.1 · 68,425–68,811 bp · −
rps12 · PQ058280.1 · 69,621–69,734 bp · −
rps12 · PQ058280.1 · 96,952–97,742 bp · −
clpP · PQ058280.1 · 69,876–71,810 bp · −
psbN · PQ058280.1 · 74,168–74,299 bp · −
rpoA · PQ058280.1 · 77,672–78,685 bp · −
rps11 · PQ058280.1 · 78,757–79,173 bp · −
rpl36 · PQ058280.1 · 79,276–79,389 bp · −
infA · PQ058280.1 · 79,485–79,718 bp · −
rps8 · PQ058280.1 · 79,838–80,248 bp · −
rpl14 · PQ058280.1 · 80,419–80,787 bp · −
rpl16 · PQ058280.1 · 80,915–82,148 bp · −
rps3 · PQ058280.1 · 82,296–82,958 bp · −
rpl22 · PQ058280.1 · 82,960–83,415 bp · −
rps19 · PQ058280.1 · 83,475–83,753 bp · −
rpl2 · PQ058280.1 · 83,809–85,291 bp · −
rpl23 · PQ058280.1 · 85,310–85,591 bp · −
trnI-CAU · PQ058280.1 · 85,751–85,824 bp · −
trnL-CAA · PQ058280.1 · 93,322–93,402 bp · −
ndhB · PQ058280.1 · 93,945–96,156 bp · −
rps7 · PQ058280.1 · 96,431–96,898 bp · −
trnN-GUU · PQ058280.1 · 107,763–107,834 bp · −
ndhF · PQ058280.1 · 108,917–111,157 bp · −
ndhD · PQ058280.1 · 113,678–115,180 bp · −
psaC · PQ058280.1 · 115,307–115,552 bp · −
ndhE · PQ058280.1 · 115,786–116,091 bp · −
ndhG · PQ058280.1 · 116,309–116,839 bp · −
ndhI · PQ058280.1 · 117,197–117,697 bp · −
ndhA · PQ058280.1 · 117,778–119,859 bp · −
ndhH · PQ058280.1 · 119,861–121,042 bp · −
rps15 · PQ058280.1 · 121,139–121,411 bp · −
ycf1 · PQ058280.1 · 121,686–127,328 bp · −
trnR-ACG · PQ058280.1 · 128,175–128,248 bp · −
rrn5 · PQ058280.1 · 128,483–128,603 bp · −
rrn4.5 · PQ058280.1 · 128,851–128,953 bp · −
rrn23 · PQ058280.1 · 129,052–131,864 bp · −
trnA-UGC · PQ058280.1 · 132,034–132,920 bp · −
trnI-GAU · PQ058280.1 · 132,985–134,004 bp · −
ycf68 · PQ058280.1 · 133,556–133,849 bp · −
rrn16 · PQ058280.1 · 134,295–135,785 bp · −
trnV-GAC · PQ058280.1 · 136,013–136,084 bp · −
ycf15 · PQ058280.1 · 142,320–142,568 bp · −
ycf2 · PQ058280.1 · 142,659–149,468 bp · −
psbK · PQ058280.1 · 7,696–7,881 bp · +
psbI · PQ058280.1 · 8,276–8,386 bp · +
trnG-UCC · PQ058280.1 · 9,295–10,041 bp · +
trnR-UCU · PQ058280.1 · 10,216–10,287 bp · +
trnC-GCA · PQ058280.1 · 28,416–28,486 bp · +
petN · PQ058280.1 · 29,195–29,284 bp · +
trnT-GGU · PQ058280.1 · 31,910–31,981 bp · +
psbD · PQ058280.1 · 33,159–34,220 bp · +
psbC · PQ058280.1 · 34,168–35,589 bp · +
psbZ · PQ058280.1 · 36,244–36,432 bp · +
trnG-GCC · PQ058280.1 · 36,691–36,761 bp · +
trnS-GGA · PQ058280.1 · 45,558–45,644 bp · +
trnL-UAA · PQ058280.1 · 47,625–48,193 bp · +
trnF-GAA · PQ058280.1 · 48,499–48,571 bp · +
trnM-CAU · PQ058280.1 · 52,185–52,257 bp · +
rbcL · PQ058280.1 · 55,106–56,569 bp · +
accD · PQ058280.1 · 57,292–58,770 bp · +
psaI · PQ058280.1 · 59,481–59,591 bp · +
ycf4 · PQ058280.1 · 60,025–60,579 bp · +
cemA · PQ058280.1 · 61,348–61,947 bp · +
petA · PQ058280.1 · 62,154–63,116 bp · +
petL · PQ058280.1 · 65,814–65,909 bp · +
petG · PQ058280.1 · 66,085–66,198 bp · +
psaJ · PQ058280.1 · 66,896–67,030 bp · +
rpl33 · PQ058280.1 · 67,512–67,712 bp · +
rps18 · PQ058280.1 · 67,886–68,191 bp · +
rps12 · PQ058280.1 · 137,639–138,429 bp · +
psbB · PQ058280.1 · 72,280–73,806 bp · +
psbT · PQ058280.1 · 74,000–74,107 bp · +
psbH · PQ058280.1 · 74,403–74,624 bp · +
petB · PQ058280.1 · 74,750–76,119 bp · +
petD · PQ058280.1 · 76,308–77,509 bp · +
ycf2 · PQ058280.1 · 85,913–92,722 bp · +
ycf15 · PQ058280.1 · 92,813–93,061 bp · +
trnV-GAC · PQ058280.1 · 99,297–99,368 bp · +
rrn16 · PQ058280.1 · 99,596–101,086 bp · +
trnI-GAU · PQ058280.1 · 101,377–102,396 bp · +
trnA-UGC · PQ058280.1 · 102,461–103,347 bp · +
rrn23 · PQ058280.1 · 103,517–106,329 bp · +
rrn4.5 · PQ058280.1 · 106,428–106,530 bp · +
rrn5 · PQ058280.1 · 106,778–106,898 bp · +
trnR-ACG · PQ058280.1 · 107,133–107,206 bp · +
rpl32 · PQ058280.1 · 111,680–111,856 bp · +
trnL-UAG · PQ058280.1 · 112,288–112,367 bp · +
ccsA · PQ058280.1 · 112,469–113,443 bp · +
trnN-GUU · PQ058280.1 · 127,547–127,618 bp · +
rps7 · PQ058280.1 · 138,483–138,950 bp · +
ndhB · PQ058280.1 · 139,225–141,436 bp · +
trnL-CAA · PQ058280.1 · 141,979–142,059 bp · +
trnI-CAU · PQ058280.1 · 149,557–149,630 bp · +
rpl23 · PQ058280.1 · 149,790–150,071 bp · +
rpl2 · PQ058280.1 · 150,090–151,572 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria flocculosa
ANNOTATED PLASTOME
PQ058280.1
151,663 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37916 75832 113747 151663 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 7 80 74 Locate
psbA gene − 274 1332 1059 Locate
trnK-UUU gene − 1565 4154 2590 Locate
matK gene − 1860 3398 1539 Locate
rps16 gene − 5043 6212 1170 Locate
trnQ-UUG gene − 7298 7369 72 Locate
psbK gene + 7696 7881 186 Locate
psbI gene + 8276 8386 111 Locate
trnS-GCU gene − 8497 8584 88 Locate
trnG-UCC gene + 9295 10041 747 Locate
trnR-UCU gene + 10216 10287 72 Locate
atpA gene − 10384 11907 1524 Locate
atpF gene − 11990 13217 1228 Locate
atpH gene − 13580 13825 246 Locate
atpI gene − 14820 15563 744 Locate
rps2 gene − 15912 16622 711 Locate
rpoC2 gene − 16839 21044 4206 Locate
rpoC1 gene − 21199 24023 2825 Locate
rpoB gene − 24050 27262 3213 Locate
trnC-GCA gene + 28416 28486 71 Locate
petN gene + 29195 29284 90 Locate
psbM gene − 30301 30405 105 Locate
trnD-GUC gene − 30932 31005 74 Locate
trnY-GUA gene − 31119 31202 84 Locate
trnE-UUC gene − 31262 31334 73 Locate
trnT-GGU gene + 31910 31981 72 Locate
psbD gene + 33159 34220 1062 Locate
psbC gene + 34168 35589 1422 Locate
trnS-UGA gene − 35833 35924 92 Locate
psbZ gene + 36244 36432 189 Locate
trnG-GCC gene + 36691 36761 71 Locate
trnfM-CAU gene − 36909 36982 74 Locate
rps14 gene − 37132 37434 303 Locate
psaB gene − 37562 39766 2205 Locate
psaA gene − 39792 42044 2253 Locate
ycf3 gene − 42743 44664 1922 Locate
trnS-GGA gene + 45558 45644 87 Locate
rps4 gene − 45929 46534 606 Locate
trnT-UGU gene − 46869 46941 73 Locate
trnL-UAA gene + 47625 48193 569 Locate
trnF-GAA gene + 48499 48571 73 Locate
ndhJ gene − 49221 49697 477 Locate
ndhK gene − 49805 50482 678 Locate
ndhC gene − 50535 50897 363 Locate
trnV-UAC gene − 51351 52004 654 Locate
trnM-CAU gene + 52185 52257 73 Locate
atpE gene − 52466 52867 402 Locate
atpB gene − 52864 54360 1497 Locate
rbcL gene + 55106 56569 1464 Locate
accD gene + 57292 58770 1479 Locate
psaI gene + 59481 59591 111 Locate
ycf4 gene + 60025 60579 555 Locate
cemA gene + 61348 61947 600 Locate
petA gene + 62154 63116 963 Locate
psbJ gene − 64126 64248 123 Locate
psbL gene − 64382 64603 222 Locate
psbF gene − 64522 64641 120 Locate
psbE gene − 64656 64907 252 Locate
petL gene + 65814 65909 96 Locate
petG gene + 66085 66198 114 Locate
trnW-CCA gene − 66317 66390 74 Locate
trnP-UGG gene − 66550 66623 74 Locate
psaJ gene + 66896 67030 135 Locate
rpl33 gene + 67512 67712 201 Locate
rps18 gene + 67886 68191 306 Locate
rpl20 gene − 68425 68811 387 Locate
rps12 gene − 69621 69734 114 Locate
clpP gene − 69876 71810 1935 Locate
psbB gene + 72280 73806 1527 Locate
psbT gene + 74000 74107 108 Locate
psbN gene − 74168 74299 132 Locate
psbH gene + 74403 74624 222 Locate
petB gene + 74750 76119 1370 Locate
petD gene + 76308 77509 1202 Locate
rpoA gene − 77672 78685 1014 Locate
rps11 gene − 78757 79173 417 Locate
rpl36 gene − 79276 79389 114 Locate
infA gene − 79485 79718 234 Locate
rps8 gene − 79838 80248 411 Locate
rpl14 gene − 80419 80787 369 Locate
rpl16 gene − 80915 82148 1234 Locate
rps3 gene − 82296 82958 663 Locate
rpl22 gene − 82960 83415 456 Locate
rps19 gene − 83475 83753 279 Locate
rpl2 gene − 83809 85291 1483 Locate
rpl23 gene − 85310 85591 282 Locate
trnI-CAU gene − 85751 85824 74 Locate
ycf2 gene + 85913 92722 6810 Locate
ycf15 gene + 92813 93061 249 Locate
trnL-CAA gene − 93322 93402 81 Locate
ndhB gene − 93945 96156 2212 Locate
rps7 gene − 96431 96898 468 Locate
rps12 gene − 96952 97742 791 Locate
trnV-GAC gene + 99297 99368 72 Locate
rrn16 gene + 99596 101086 1491 Locate
trnI-GAU gene + 101377 102396 1020 Locate
trnA-UGC gene + 102461 103347 887 Locate
rrn23 gene + 103517 106329 2813 Locate
rrn4.5 gene + 106428 106530 103 Locate
rrn5 gene + 106778 106898 121 Locate
trnR-ACG gene + 107133 107206 74 Locate
trnN-GUU gene − 107763 107834 72 Locate
ndhF gene − 108917 111157 2241 Locate
rpl32 gene + 111680 111856 177 Locate
trnL-UAG gene + 112288 112367 80 Locate
ccsA gene + 112469 113443 975 Locate
ndhD gene − 113678 115180 1503 Locate
psaC gene − 115307 115552 246 Locate
ndhE gene − 115786 116091 306 Locate
ndhG gene − 116309 116839 531 Locate
ndhI gene − 117197 117697 501 Locate
ndhA gene − 117778 119859 2082 Locate
ndhH gene − 119861 121042 1182 Locate
rps15 gene − 121139 121411 273 Locate
ycf1 gene − 121686 127328 5643 Locate
trnN-GUU gene + 127547 127618 72 Locate
trnR-ACG gene − 128175 128248 74 Locate
rrn5 gene − 128483 128603 121 Locate
rrn4.5 gene − 128851 128953 103 Locate
rrn23 gene − 129052 131864 2813 Locate
trnA-UGC gene − 132034 132920 887 Locate
trnI-GAU gene − 132985 134004 1020 Locate
ycf68 gene − 133556 133849 294 Locate
rrn16 gene − 134295 135785 1491 Locate
trnV-GAC gene − 136013 136084 72 Locate
rps12 gene + 137639 138429 791 Locate
rps7 gene + 138483 138950 468 Locate
ndhB gene + 139225 141436 2212 Locate
trnL-CAA gene + 141979 142059 81 Locate
ycf15 gene − 142320 142568 249 Locate
ycf2 gene − 142659 149468 6810 Locate
trnI-CAU gene + 149557 149630 74 Locate
rpl23 gene + 149790 150071 282 Locate
rpl2 gene + 150090 151572 1483 Locate
Status Available
Accession PQ058280.1
Length 151,663 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources