Scutellaria galericulata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059292.1 · 3–76 bp · −
psbA · PQ059292.1 · 380–1,438 bp · −
trnK-UUU · PQ059292.1 · 1,671–4,258 bp · −
matK · PQ059292.1 · 1,966–3,501 bp · −
rps16 · PQ059292.1 · 5,163–6,331 bp · −
trnQ-UUG · PQ059292.1 · 7,462–7,533 bp · −
trnS-GCU · PQ059292.1 · 8,663–8,750 bp · −
atpA · PQ059292.1 · 10,540–12,063 bp · −
atpF · PQ059292.1 · 12,137–13,364 bp · −
atpH · PQ059292.1 · 13,731–13,976 bp · −
atpI · PQ059292.1 · 14,973–15,716 bp · −
rps2 · PQ059292.1 · 16,065–16,775 bp · −
rpoC2 · PQ059292.1 · 16,991–21,196 bp · −
rpoC1 · PQ059292.1 · 21,351–24,187 bp · −
rpoB · PQ059292.1 · 24,214–27,426 bp · −
psbM · PQ059292.1 · 30,488–30,592 bp · −
trnD-GUC · PQ059292.1 · 31,118–31,191 bp · −
trnY-GUA · PQ059292.1 · 31,305–31,388 bp · −
trnE-UUC · PQ059292.1 · 31,448–31,520 bp · −
trnS-UGA · PQ059292.1 · 36,145–36,236 bp · −
trnfM-CAU · PQ059292.1 · 37,232–37,305 bp · −
rps14 · PQ059292.1 · 37,455–37,757 bp · −
psaB · PQ059292.1 · 37,885–40,089 bp · −
psaA · PQ059292.1 · 40,115–42,367 bp · −
ycf3 · PQ059292.1 · 43,044–44,967 bp · −
rps4 · PQ059292.1 · 46,227–46,832 bp · −
trnT-UGU · PQ059292.1 · 47,171–47,243 bp · −
ndhJ · PQ059292.1 · 49,524–50,000 bp · −
ndhK · PQ059292.1 · 50,108–50,785 bp · −
ndhC · PQ059292.1 · 50,838–51,200 bp · −
trnV-UAC · PQ059292.1 · 52,197–52,849 bp · −
atpE · PQ059292.1 · 53,312–53,713 bp · −
atpB · PQ059292.1 · 53,710–55,197 bp · −
psbJ · PQ059292.1 · 64,953–65,075 bp · −
psbL · PQ059292.1 · 65,209–65,325 bp · −
psbF · PQ059292.1 · 65,349–65,468 bp · −
psbE · PQ059292.1 · 65,483–65,734 bp · −
trnW-CCA · PQ059292.1 · 67,144–67,217 bp · −
trnP-UGG · PQ059292.1 · 67,387–67,460 bp · −
rpl20 · PQ059292.1 · 69,256–69,642 bp · −
rps12 · PQ059292.1 · 70,430–70,555 bp · −
rps12 · PQ059292.1 · 97,771–98,561 bp · −
clpP · PQ059292.1 · 70,698–72,632 bp · −
psbN · PQ059292.1 · 74,995–75,126 bp · −
rpoA · PQ059292.1 · 78,494–79,507 bp · −
rps11 · PQ059292.1 · 79,579–79,995 bp · −
rpl36 · PQ059292.1 · 80,097–80,210 bp · −
infA · PQ059292.1 · 80,306–80,539 bp · −
rps8 · PQ059292.1 · 80,659–81,069 bp · −
rpl14 · PQ059292.1 · 81,228–81,596 bp · −
rpl16 · PQ059292.1 · 81,723–82,966 bp · −
rps3 · PQ059292.1 · 83,121–83,783 bp · −
rpl22 · PQ059292.1 · 83,785–84,240 bp · −
rps19 · PQ059292.1 · 84,300–84,578 bp · −
rpl2 · PQ059292.1 · 84,633–86,115 bp · −
rpl23 · PQ059292.1 · 86,134–86,415 bp · −
trnI-CAU · PQ059292.1 · 86,575–86,648 bp · −
trnL-CAA · PQ059292.1 · 94,141–94,221 bp · −
ndhB · PQ059292.1 · 94,764–96,921 bp · −
rps7 · PQ059292.1 · 97,250–97,717 bp · −
trnN-GUU · PQ059292.1 · 108,602–108,673 bp · −
ndhF · PQ059292.1 · 109,743–111,983 bp · −
ndhD · PQ059292.1 · 114,504–116,027 bp · −
psaC · PQ059292.1 · 116,126–116,371 bp · −
ndhE · PQ059292.1 · 116,632–116,937 bp · −
ndhG · PQ059292.1 · 117,158–117,688 bp · −
ndhI · PQ059292.1 · 118,052–118,552 bp · −
ndhA · PQ059292.1 · 118,633–120,732 bp · −
ndhH · PQ059292.1 · 120,734–121,915 bp · −
rps15 · PQ059292.1 · 122,018–122,290 bp · −
ycf1 · PQ059292.1 · 122,561–128,314 bp · −
trnR-ACG · PQ059292.1 · 129,045–129,118 bp · −
rrn5 · PQ059292.1 · 129,353–129,473 bp · −
rrn4.5 · PQ059292.1 · 129,721–129,823 bp · −
rrn23 · PQ059292.1 · 129,922–132,734 bp · −
trnA-UGC · PQ059292.1 · 132,904–133,788 bp · −
trnI-GAU · PQ059292.1 · 133,853–134,873 bp · −
ycf68 · PQ059292.1 · 134,479–134,718 bp · −
rrn16 · PQ059292.1 · 135,172–136,662 bp · −
trnV-GAC · PQ059292.1 · 136,890–136,961 bp · −
ycf15 · PQ059292.1 · 143,215–143,463 bp · −
ycf2 · PQ059292.1 · 143,554–150,363 bp · −
psbK · PQ059292.1 · 7,858–8,043 bp · +
psbI · PQ059292.1 · 8,434–8,544 bp · +
trnG-UCC · PQ059292.1 · 9,438–10,197 bp · +
trnR-UCU · PQ059292.1 · 10,372–10,443 bp · +
trnC-GCA · PQ059292.1 · 28,590–28,660 bp · +
petN · PQ059292.1 · 29,371–29,460 bp · +
trnT-GGU · PQ059292.1 · 32,103–32,174 bp · +
psbD · PQ059292.1 · 33,471–34,532 bp · +
psbC · PQ059292.1 · 34,480–35,901 bp · +
psbZ · PQ059292.1 · 36,556–36,744 bp · +
trnG-GCC · PQ059292.1 · 37,016–37,086 bp · +
trnS-GGA · PQ059292.1 · 45,855–45,941 bp · +
trnL-UAA · PQ059292.1 · 47,929–48,496 bp · +
trnF-GAA · PQ059292.1 · 48,803–48,875 bp · +
trnM-CAU · PQ059292.1 · 53,030–53,102 bp · +
rbcL · PQ059292.1 · 55,949–57,412 bp · +
accD · PQ059292.1 · 58,123–59,589 bp · +
psaI · PQ059292.1 · 60,320–60,430 bp · +
ycf4 · PQ059292.1 · 60,864–61,418 bp · +
cemA · PQ059292.1 · 62,167–62,766 bp · +
petA · PQ059292.1 · 62,973–63,935 bp · +
petL · PQ059292.1 · 66,642–66,737 bp · +
petG · PQ059292.1 · 66,912–67,025 bp · +
psaJ · PQ059292.1 · 67,669–67,866 bp · +
rpl33 · PQ059292.1 · 68,338–68,538 bp · +
rps18 · PQ059292.1 · 68,713–69,018 bp · +
rps12 · PQ059292.1 · 138,539–139,329 bp · +
psbB · PQ059292.1 · 73,102–74,628 bp · +
psbT · PQ059292.1 · 74,820–74,921 bp · +
psbH · PQ059292.1 · 75,230–75,451 bp · +
petB · PQ059292.1 · 75,576–76,941 bp · +
petD · PQ059292.1 · 77,130–78,331 bp · +
ycf2 · PQ059292.1 · 86,737–93,546 bp · +
ycf15 · PQ059292.1 · 93,637–93,885 bp · +
trnV-GAC · PQ059292.1 · 100,139–100,210 bp · +
rrn16 · PQ059292.1 · 100,438–101,928 bp · +
trnI-GAU · PQ059292.1 · 102,227–103,247 bp · +
trnA-UGC · PQ059292.1 · 103,312–104,196 bp · +
rrn23 · PQ059292.1 · 104,366–107,178 bp · +
rrn4.5 · PQ059292.1 · 107,277–107,379 bp · +
rrn5 · PQ059292.1 · 107,627–107,747 bp · +
trnR-ACG · PQ059292.1 · 107,982–108,055 bp · +
rpl32 · PQ059292.1 · 112,500–112,676 bp · +
trnL-UAG · PQ059292.1 · 113,121–113,200 bp · +
ccsA · PQ059292.1 · 113,297–114,271 bp · +
trnN-GUU · PQ059292.1 · 128,427–128,498 bp · +
rps7 · PQ059292.1 · 139,383–139,850 bp · +
ndhB · PQ059292.1 · 140,179–142,336 bp · +
trnL-CAA · PQ059292.1 · 142,879–142,959 bp · +
trnI-CAU · PQ059292.1 · 150,452–150,525 bp · +
rpl23 · PQ059292.1 · 150,685–150,966 bp · +
rpl2 · PQ059292.1 · 150,985–152,467 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria galericulata
ANNOTATED PLASTOME
PQ059292.1
152,562 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38140 76281 114422 152562 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1671 4258 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUG gene − 7462 7533 72 Locate
psbK gene + 7858 8043 186 Locate
psbI gene + 8434 8544 111 Locate
trnS-GCU gene − 8663 8750 88 Locate
trnG-UCC gene + 9438 10197 760 Locate
trnR-UCU gene + 10372 10443 72 Locate
atpA gene − 10540 12063 1524 Locate
atpF gene − 12137 13364 1228 Locate
atpH gene − 13731 13976 246 Locate
atpI gene − 14973 15716 744 Locate
rps2 gene − 16065 16775 711 Locate
rpoC2 gene − 16991 21196 4206 Locate
rpoC1 gene − 21351 24187 2837 Locate
rpoB gene − 24214 27426 3213 Locate
trnC-GCA gene + 28590 28660 71 Locate
petN gene + 29371 29460 90 Locate
psbM gene − 30488 30592 105 Locate
trnD-GUC gene − 31118 31191 74 Locate
trnY-GUA gene − 31305 31388 84 Locate
trnE-UUC gene − 31448 31520 73 Locate
trnT-GGU gene + 32103 32174 72 Locate
psbD gene + 33471 34532 1062 Locate
psbC gene + 34480 35901 1422 Locate
trnS-UGA gene − 36145 36236 92 Locate
psbZ gene + 36556 36744 189 Locate
trnG-GCC gene + 37016 37086 71 Locate
trnfM-CAU gene − 37232 37305 74 Locate
rps14 gene − 37455 37757 303 Locate
psaB gene − 37885 40089 2205 Locate
psaA gene − 40115 42367 2253 Locate
ycf3 gene − 43044 44967 1924 Locate
trnS-GGA gene + 45855 45941 87 Locate
rps4 gene − 46227 46832 606 Locate
trnT-UGU gene − 47171 47243 73 Locate
trnL-UAA gene + 47929 48496 568 Locate
trnF-GAA gene + 48803 48875 73 Locate
ndhJ gene − 49524 50000 477 Locate
ndhK gene − 50108 50785 678 Locate
ndhC gene − 50838 51200 363 Locate
trnV-UAC gene − 52197 52849 653 Locate
trnM-CAU gene + 53030 53102 73 Locate
atpE gene − 53312 53713 402 Locate
atpB gene − 53710 55197 1488 Locate
rbcL gene + 55949 57412 1464 Locate
accD gene + 58123 59589 1467 Locate
psaI gene + 60320 60430 111 Locate
ycf4 gene + 60864 61418 555 Locate
cemA gene + 62167 62766 600 Locate
petA gene + 62973 63935 963 Locate
psbJ gene − 64953 65075 123 Locate
psbL gene − 65209 65325 117 Locate
psbF gene − 65349 65468 120 Locate
psbE gene − 65483 65734 252 Locate
petL gene + 66642 66737 96 Locate
petG gene + 66912 67025 114 Locate
trnW-CCA gene − 67144 67217 74 Locate
trnP-UGG gene − 67387 67460 74 Locate
psaJ gene + 67669 67866 198 Locate
rpl33 gene + 68338 68538 201 Locate
rps18 gene + 68713 69018 306 Locate
rpl20 gene − 69256 69642 387 Locate
rps12 gene − 70430 70555 126 Locate
clpP gene − 70698 72632 1935 Locate
psbB gene + 73102 74628 1527 Locate
psbT gene + 74820 74921 102 Locate
psbN gene − 74995 75126 132 Locate
psbH gene + 75230 75451 222 Locate
petB gene + 75576 76941 1366 Locate
petD gene + 77130 78331 1202 Locate
rpoA gene − 78494 79507 1014 Locate
rps11 gene − 79579 79995 417 Locate
rpl36 gene − 80097 80210 114 Locate
infA gene − 80306 80539 234 Locate
rps8 gene − 80659 81069 411 Locate
rpl14 gene − 81228 81596 369 Locate
rpl16 gene − 81723 82966 1244 Locate
rps3 gene − 83121 83783 663 Locate
rpl22 gene − 83785 84240 456 Locate
rps19 gene − 84300 84578 279 Locate
rpl2 gene − 84633 86115 1483 Locate
rpl23 gene − 86134 86415 282 Locate
trnI-CAU gene − 86575 86648 74 Locate
ycf2 gene + 86737 93546 6810 Locate
ycf15 gene + 93637 93885 249 Locate
trnL-CAA gene − 94141 94221 81 Locate
ndhB gene − 94764 96921 2158 Locate
rps7 gene − 97250 97717 468 Locate
rps12 gene − 97771 98561 791 Locate
trnV-GAC gene + 100139 100210 72 Locate
rrn16 gene + 100438 101928 1491 Locate
trnI-GAU gene + 102227 103247 1021 Locate
trnA-UGC gene + 103312 104196 885 Locate
rrn23 gene + 104366 107178 2813 Locate
rrn4.5 gene + 107277 107379 103 Locate
rrn5 gene + 107627 107747 121 Locate
trnR-ACG gene + 107982 108055 74 Locate
trnN-GUU gene − 108602 108673 72 Locate
ndhF gene − 109743 111983 2241 Locate
rpl32 gene + 112500 112676 177 Locate
trnL-UAG gene + 113121 113200 80 Locate
ccsA gene + 113297 114271 975 Locate
ndhD gene − 114504 116027 1524 Locate
psaC gene − 116126 116371 246 Locate
ndhE gene − 116632 116937 306 Locate
ndhG gene − 117158 117688 531 Locate
ndhI gene − 118052 118552 501 Locate
ndhA gene − 118633 120732 2100 Locate
ndhH gene − 120734 121915 1182 Locate
rps15 gene − 122018 122290 273 Locate
ycf1 gene − 122561 128314 5754 Locate
trnN-GUU gene + 128427 128498 72 Locate
trnR-ACG gene − 129045 129118 74 Locate
rrn5 gene − 129353 129473 121 Locate
rrn4.5 gene − 129721 129823 103 Locate
rrn23 gene − 129922 132734 2813 Locate
trnA-UGC gene − 132904 133788 885 Locate
trnI-GAU gene − 133853 134873 1021 Locate
ycf68 gene − 134479 134718 240 Locate
rrn16 gene − 135172 136662 1491 Locate
trnV-GAC gene − 136890 136961 72 Locate
rps12 gene + 138539 139329 791 Locate
rps7 gene + 139383 139850 468 Locate
ndhB gene + 140179 142336 2158 Locate
trnL-CAA gene + 142879 142959 81 Locate
ycf15 gene − 143215 143463 249 Locate
ycf2 gene − 143554 150363 6810 Locate
trnI-CAU gene + 150452 150525 74 Locate
rpl23 gene + 150685 150966 282 Locate
rpl2 gene + 150985 152467 1483 Locate
Status Available
Accession PQ059292.1
Length 152,562 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources