Scutellaria gaumeri chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420958.1 · 3–76 bp · −
psbA · MW420958.1 · 332–1,390 bp · −
trnK-UUU · MW420958.1 · 1,635–4,221 bp · −
matK · MW420958.1 · 1,925–3,469 bp · −
rps16 · MW420958.1 · 5,144–6,315 bp · −
trnQ-UUC · MW420958.1 · 7,441–7,512 bp · −
trnS-GCU · MW420958.1 · 8,644–8,731 bp · −
atpA · MW420958.1 · 10,505–12,028 bp · −
atpF · MW420958.1 · 12,110–13,339 bp · −
atpH · MW420958.1 · 13,704–13,949 bp · −
atpI · MW420958.1 · 14,933–15,676 bp · −
rps2 · MW420958.1 · 16,006–16,716 bp · −
rpoC2 · MW420958.1 · 16,933–21,138 bp · −
rpoC1 · MW420958.1 · 21,284–24,115 bp · −
rpoB · MW420958.1 · 24,142–27,354 bp · −
psbM · MW420958.1 · 30,417–30,530 bp · −
trnD-GUC · MW420958.1 · 31,057–31,130 bp · −
trnY-GUA · MW420958.1 · 31,244–31,327 bp · −
trnE-UUC · MW420958.1 · 31,387–31,459 bp · −
trnS-UCA · MW420958.1 · 36,087–36,179 bp · −
trnfM-CAU · MW420958.1 · 37,172–37,245 bp · −
rps14 · MW420958.1 · 37,395–37,697 bp · −
psaB · MW420958.1 · 37,825–40,029 bp · −
psaA · MW420958.1 · 40,055–42,307 bp · −
ycf3 · MW420958.1 · 42,998–44,919 bp · −
rps4 · MW420958.1 · 46,157–46,762 bp · −
trnT-UGU · MW420958.1 · 47,089–47,161 bp · −
ndhJ · MW420958.1 · 49,443–49,919 bp · −
ndhK · MW420958.1 · 50,027–50,704 bp · −
ndhC · MW420958.1 · 50,757–51,119 bp · −
trnV-UAC · MW420958.1 · 52,029–52,682 bp · −
atpE · MW420958.1 · 53,145–53,546 bp · −
atpB · MW420958.1 · 53,543–55,039 bp · −
pabJ · MW420958.1 · 64,796–64,918 bp · −
psbL · MW420958.1 · 65,052–65,168 bp · −
psbF · MW420958.1 · 65,192–65,311 bp · −
psbE · MW420958.1 · 65,326–65,577 bp · −
trnW-CCA · MW420958.1 · 66,988–67,061 bp · −
trnP-UGG · MW420958.1 · 67,217–67,290 bp · −
rpl20 · MW420958.1 · 69,087–69,473 bp · −
rps12 · MW420958.1 · 70,261–70,386 bp · −
rps12 · MW420958.1 · 97,606–98,396 bp · −
clpP · MW420958.1 · 70,527–72,461 bp · −
psbN · MW420958.1 · 74,810–74,941 bp · −
rpoA · MW420958.1 · 78,322–79,335 bp · −
rps11 · MW420958.1 · 79,407–79,823 bp · −
rpl36 · MW420958.1 · 79,925–80,038 bp · −
infA · MW420958.1 · 80,134–80,367 bp · −
rps8 · MW420958.1 · 80,486–80,896 bp · −
rpl14 · MW420958.1 · 81,065–81,433 bp · −
rpl16 · MW420958.1 · 81,551–82,795 bp · −
rps3 · MW420958.1 · 82,950–83,612 bp · −
rpl22 · MW420958.1 · 83,639–84,070 bp · −
rps19 · MW420958.1 · 84,129–84,407 bp · −
rpl2 · MW420958.1 · 84,463–85,945 bp · −
rpl23 · MW420958.1 · 85,964–86,245 bp · −
trnI-CAU · MW420958.1 · 86,405–86,478 bp · −
trnL-CAA · MW420958.1 · 93,976–94,056 bp · −
ndhB · MW420958.1 · 94,599–96,810 bp · −
rps7 · MW420958.1 · 97,085–97,552 bp · −
ndhF · MW420958.1 · 109,593–111,833 bp · −
ndhD · MW420958.1 · 114,354–115,883 bp · −
psaC · MW420958.1 · 115,983–116,228 bp · −
ndhE · MW420958.1 · 116,484–116,789 bp · −
ndhG · MW420958.1 · 117,021–117,551 bp · −
ndhI · MW420958.1 · 117,903–118,403 bp · −
ndhA · MW420958.1 · 118,484–120,584 bp · −
ndhH · MW420958.1 · 120,586–121,767 bp · −
rps15 · MW420958.1 · 121,864–122,136 bp · −
ycf1 · MW420958.1 · 122,404–127,860 bp · −
trnR-ACG · MW420958.1 · 128,811–128,884 bp · −
rrn5 · MW420958.1 · 129,119–129,239 bp · −
rrn4.5 · MW420958.1 · 129,487–129,589 bp · −
rrn23 · MW420958.1 · 129,688–132,500 bp · −
trnA-UGC · MW420958.1 · 132,676–133,567 bp · −
trnI-GAU · MW420958.1 · 133,633–134,651 bp · −
rrn16 · MW420958.1 · 134,950–136,440 bp · −
trnV-GAC · MW420958.1 · 136,668–136,739 bp · −
ycf15 · MW420958.1 · 142,991–143,188 bp · −
ycf2 · MW420958.1 · 143,330–150,139 bp · −
psbK · MW420958.1 · 7,837–8,022 bp · +
psbI · MW420958.1 · 8,418–8,528 bp · +
trnG-CGA · MW420958.1 · 9,411–10,163 bp · +
trnR-UCU · MW420958.1 · 10,337–10,408 bp · +
trnC-GCA · MW420958.1 · 28,523–28,593 bp · +
petN · MW420958.1 · 29,320–29,409 bp · +
trnT-GGU · MW420958.1 · 32,035–32,106 bp · +
psbD · MW420958.1 · 33,415–34,476 bp · +
psbC · MW420958.1 · 34,424–35,845 bp · +
psbZ · MW420958.1 · 36,499–36,687 bp · +
trnG-GCC · MW420958.1 · 36,959–37,029 bp · +
trnS-GGA · MW420958.1 · 45,787–45,873 bp · +
trnL-UAA · MW420958.1 · 47,840–48,409 bp · +
trnF-GAA · MW420958.1 · 48,719–48,791 bp · +
trnM-CAU · MW420958.1 · 52,863–52,935 bp · +
rbcL · MW420958.1 · 55,813–57,252 bp · +
accD · MW420958.1 · 57,976–59,454 bp · +
psaI · MW420958.1 · 60,166–60,276 bp · +
ycf4 · MW420958.1 · 60,718–61,272 bp · +
cemA · MW420958.1 · 61,952–62,611 bp · +
petA · MW420958.1 · 62,818–63,780 bp · +
petL · MW420958.1 · 66,485–66,580 bp · +
petG · MW420958.1 · 66,756–66,869 bp · +
psbJ · MW420958.1 · 67,563–67,697 bp · +
rpl33 · MW420958.1 · 68,170–68,370 bp · +
rps18 · MW420958.1 · 68,546–68,851 bp · +
rps12 · MW420958.1 · 138,310–139,100 bp · +
psbB · MW420958.1 · 72,924–74,450 bp · +
psbT · MW420958.1 · 74,642–74,749 bp · +
psbH · MW420958.1 · 75,045–75,266 bp · +
petB · MW420958.1 · 75,392–76,759 bp · +
petD · MW420958.1 · 76,948–78,159 bp · +
ycf2 · MW420958.1 · 86,567–93,376 bp · +
ycf15 · MW420958.1 · 93,518–93,715 bp · +
trnV-GAC · MW420958.1 · 99,967–100,038 bp · +
rrn16 · MW420958.1 · 100,266–101,756 bp · +
trnI-GAU · MW420958.1 · 102,055–103,073 bp · +
trnA-UGC · MW420958.1 · 103,139–104,030 bp · +
rrn23 · MW420958.1 · 104,206–107,018 bp · +
rrn4.5 · MW420958.1 · 107,117–107,219 bp · +
rrn5 · MW420958.1 · 107,467–107,587 bp · +
trnR-ACG · MW420958.1 · 107,822–107,895 bp · +
trnN-GUU · MW420958.1 · 108,445–108,516 bp · +
rpl32 · MW420958.1 · 112,356–112,532 bp · +
trnL-UAG · MW420958.1 · 112,965–113,044 bp · +
ccsA · MW420958.1 · 113,152–114,126 bp · +
trnN-GUU · MW420958.1 · 128,190–128,261 bp · +
rps7 · MW420958.1 · 139,154–139,621 bp · +
ndhB · MW420958.1 · 139,896–142,107 bp · +
trnL-CAA · MW420958.1 · 142,650–142,730 bp · +
trnI-CAU · MW420958.1 · 150,228–150,301 bp · +
rpl23 · MW420958.1 · 150,461–150,742 bp · +
rpl2 · MW420958.1 · 150,761–152,243 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria gaumeri
ANNOTATED PLASTOME
MW420958.1
152,339 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38085 76170 114254 152339 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 332 1390 1059 Locate
trnK-UUU gene − 1635 4221 2587 Locate
matK gene − 1925 3469 1545 Locate
rps16 gene − 5144 6315 1172 Locate
trnQ-UUC gene − 7441 7512 72 Locate
psbK gene + 7837 8022 186 Locate
psbI gene + 8418 8528 111 Locate
trnS-GCU gene − 8644 8731 88 Locate
trnG-CGA gene + 9411 10163 753 Locate
trnR-UCU gene + 10337 10408 72 Locate
atpA gene − 10505 12028 1524 Locate
atpF gene − 12110 13339 1230 Locate
atpH gene − 13704 13949 246 Locate
atpI gene − 14933 15676 744 Locate
rps2 gene − 16006 16716 711 Locate
rpoC2 gene − 16933 21138 4206 Locate
rpoC1 gene − 21284 24115 2832 Locate
rpoB gene − 24142 27354 3213 Locate
trnC-GCA gene + 28523 28593 71 Locate
petN gene + 29320 29409 90 Locate
psbM gene − 30417 30530 114 Locate
trnD-GUC gene − 31057 31130 74 Locate
trnY-GUA gene − 31244 31327 84 Locate
trnE-UUC gene − 31387 31459 73 Locate
trnT-GGU gene + 32035 32106 72 Locate
psbD gene + 33415 34476 1062 Locate
psbC gene + 34424 35845 1422 Locate
trnS-UCA gene − 36087 36179 93 Locate
psbZ gene + 36499 36687 189 Locate
trnG-GCC gene + 36959 37029 71 Locate
trnfM-CAU gene − 37172 37245 74 Locate
rps14 gene − 37395 37697 303 Locate
psaB gene − 37825 40029 2205 Locate
psaA gene − 40055 42307 2253 Locate
ycf3 gene − 42998 44919 1922 Locate
trnS-GGA gene + 45787 45873 87 Locate
rps4 gene − 46157 46762 606 Locate
trnT-UGU gene − 47089 47161 73 Locate
trnL-UAA gene + 47840 48409 570 Locate
trnF-GAA gene + 48719 48791 73 Locate
ndhJ gene − 49443 49919 477 Locate
ndhK gene − 50027 50704 678 Locate
ndhC gene − 50757 51119 363 Locate
trnV-UAC gene − 52029 52682 654 Locate
trnM-CAU gene + 52863 52935 73 Locate
atpE gene − 53145 53546 402 Locate
atpB gene − 53543 55039 1497 Locate
rbcL gene + 55813 57252 1440 Locate
accD gene + 57976 59454 1479 Locate
psaI gene + 60166 60276 111 Locate
ycf4 gene + 60718 61272 555 Locate
cemA gene + 61952 62611 660 Locate
petA gene + 62818 63780 963 Locate
pabJ gene − 64796 64918 123 Locate
psbL gene − 65052 65168 117 Locate
psbF gene − 65192 65311 120 Locate
psbE gene − 65326 65577 252 Locate
petL gene + 66485 66580 96 Locate
petG gene + 66756 66869 114 Locate
trnW-CCA gene − 66988 67061 74 Locate
trnP-UGG gene − 67217 67290 74 Locate
psbJ gene + 67563 67697 135 Locate
rpl33 gene + 68170 68370 201 Locate
rps18 gene + 68546 68851 306 Locate
rpl20 gene − 69087 69473 387 Locate
rps12 gene − 70261 70386 126 Locate
clpP gene − 70527 72461 1935 Locate
psbB gene + 72924 74450 1527 Locate
psbT gene + 74642 74749 108 Locate
psbN gene − 74810 74941 132 Locate
psbH gene + 75045 75266 222 Locate
petB gene + 75392 76759 1368 Locate
petD gene + 76948 78159 1212 Locate
rpoA gene − 78322 79335 1014 Locate
rps11 gene − 79407 79823 417 Locate
rpl36 gene − 79925 80038 114 Locate
infA gene − 80134 80367 234 Locate
rps8 gene − 80486 80896 411 Locate
rpl14 gene − 81065 81433 369 Locate
rpl16 gene − 81551 82795 1245 Locate
rps3 gene − 82950 83612 663 Locate
rpl22 gene − 83639 84070 432 Locate
rps19 gene − 84129 84407 279 Locate
rpl2 gene − 84463 85945 1483 Locate
rpl23 gene − 85964 86245 282 Locate
trnI-CAU gene − 86405 86478 74 Locate
ycf2 gene + 86567 93376 6810 Locate
ycf15 gene + 93518 93715 198 Locate
trnL-CAA gene − 93976 94056 81 Locate
ndhB gene − 94599 96810 2212 Locate
rps7 gene − 97085 97552 468 Locate
rps12 gene − 97606 98396 791 Locate
trnV-GAC gene + 99967 100038 72 Locate
rrn16 gene + 100266 101756 1491 Locate
trnI-GAU gene + 102055 103073 1019 Locate
trnA-UGC gene + 103139 104030 892 Locate
rrn23 gene + 104206 107018 2813 Locate
rrn4.5 gene + 107117 107219 103 Locate
rrn5 gene + 107467 107587 121 Locate
trnR-ACG gene + 107822 107895 74 Locate
trnN-GUU gene + 108445 108516 72 Locate
ndhF gene − 109593 111833 2241 Locate
rpl32 gene + 112356 112532 177 Locate
trnL-UAG gene + 112965 113044 80 Locate
ccsA gene + 113152 114126 975 Locate
ndhD gene − 114354 115883 1530 Locate
psaC gene − 115983 116228 246 Locate
ndhE gene − 116484 116789 306 Locate
ndhG gene − 117021 117551 531 Locate
ndhI gene − 117903 118403 501 Locate
ndhA gene − 118484 120584 2101 Locate
ndhH gene − 120586 121767 1182 Locate
rps15 gene − 121864 122136 273 Locate
ycf1 gene − 122404 127860 5457 Locate
trnN-GUU gene + 128190 128261 72 Locate
trnR-ACG gene − 128811 128884 74 Locate
rrn5 gene − 129119 129239 121 Locate
rrn4.5 gene − 129487 129589 103 Locate
rrn23 gene − 129688 132500 2813 Locate
trnA-UGC gene − 132676 133567 892 Locate
trnI-GAU gene − 133633 134651 1019 Locate
rrn16 gene − 134950 136440 1491 Locate
trnV-GAC gene − 136668 136739 72 Locate
rps12 gene + 138310 139100 791 Locate
rps7 gene + 139154 139621 468 Locate
ndhB gene + 139896 142107 2212 Locate
trnL-CAA gene + 142650 142730 81 Locate
ycf15 gene − 142991 143188 198 Locate
ycf2 gene − 143330 150139 6810 Locate
trnI-CAU gene + 150228 150301 74 Locate
rpl23 gene + 150461 150742 282 Locate
rpl2 gene + 150761 152243 1483 Locate
Status Available
Accession MW420958.1
Length 152,339 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources