Scutellaria glutinosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059222.1 · 10–83 bp · −
psbA · PQ059222.1 · 381–1,439 bp · −
trnK-UUU · PQ059222.1 · 1,682–4,256 bp · −
matK · PQ059222.1 · 1,964–3,490 bp · −
rps16 · PQ059222.1 · 5,157–6,316 bp · −
trnQ-UUG · PQ059222.1 · 7,451–7,522 bp · −
trnS-GCU · PQ059222.1 · 8,648–8,735 bp · −
atpA · PQ059222.1 · 10,533–12,056 bp · −
atpF · PQ059222.1 · 12,139–13,368 bp · −
atpH · PQ059222.1 · 13,730–13,975 bp · −
atpI · PQ059222.1 · 14,963–15,706 bp · −
rps2 · PQ059222.1 · 16,052–16,762 bp · −
rpoC2 · PQ059222.1 · 16,977–21,182 bp · −
rpoC1 · PQ059222.1 · 21,337–24,175 bp · −
rpoB · PQ059222.1 · 24,202–27,414 bp · −
psbM · PQ059222.1 · 30,584–30,688 bp · −
trnD-GUC · PQ059222.1 · 31,214–31,287 bp · −
trnY-GUA · PQ059222.1 · 31,401–31,484 bp · −
trnE-UUC · PQ059222.1 · 31,544–31,616 bp · −
trnS-UGA · PQ059222.1 · 36,234–36,325 bp · −
trnfM-CAU · PQ059222.1 · 37,321–37,394 bp · −
rps14 · PQ059222.1 · 37,549–37,851 bp · −
psaB · PQ059222.1 · 37,979–40,183 bp · −
psaA · PQ059222.1 · 40,209–42,461 bp · −
ycf3 · PQ059222.1 · 43,159–45,080 bp · −
rps4 · PQ059222.1 · 46,331–46,936 bp · −
trnT-UGU · PQ059222.1 · 47,278–47,350 bp · −
ndhJ · PQ059222.1 · 49,626–50,102 bp · −
ndhK · PQ059222.1 · 50,211–50,888 bp · −
ndhC · PQ059222.1 · 50,942–51,304 bp · −
trnV-UAC · PQ059222.1 · 52,281–52,933 bp · −
atpE · PQ059222.1 · 53,388–53,789 bp · −
atpB · PQ059222.1 · 53,786–55,282 bp · −
psbJ · PQ059222.1 · 65,021–65,143 bp · −
psbL · PQ059222.1 · 65,277–65,393 bp · −
psbF · PQ059222.1 · 65,417–65,536 bp · −
psbE · PQ059222.1 · 65,551–65,802 bp · −
trnW-CCA · PQ059222.1 · 67,182–67,255 bp · −
trnP-UGG · PQ059222.1 · 67,425–67,498 bp · −
rpl20 · PQ059222.1 · 69,294–69,680 bp · −
rps12 · PQ059222.1 · 70,475–70,588 bp · −
rps12 · PQ059222.1 · 97,751–98,541 bp · −
clpP · PQ059222.1 · 70,730–72,659 bp · −
psbN · PQ059222.1 · 74,996–75,127 bp · −
rpoA · PQ059222.1 · 78,692–79,492 bp · −
rps11 · PQ059222.1 · 79,570–79,986 bp · −
rpl36 · PQ059222.1 · 80,088–80,201 bp · −
infA · PQ059222.1 · 80,296–80,529 bp · −
rps8 · PQ059222.1 · 80,652–81,062 bp · −
rpl14 · PQ059222.1 · 81,214–81,582 bp · −
rpl16 · PQ059222.1 · 81,709–82,942 bp · −
rps3 · PQ059222.1 · 83,098–83,760 bp · −
rpl22 · PQ059222.1 · 83,762–84,217 bp · −
rps19 · PQ059222.1 · 84,277–84,555 bp · −
rpl2 · PQ059222.1 · 84,610–86,091 bp · −
rpl23 · PQ059222.1 · 86,110–86,391 bp · −
trnI-CAU · PQ059222.1 · 86,551–86,624 bp · −
trnL-CAA · PQ059222.1 · 94,121–94,201 bp · −
ndhB · PQ059222.1 · 94,744–96,901 bp · −
rps7 · PQ059222.1 · 97,230–97,697 bp · −
trnN-GUU · PQ059222.1 · 108,579–108,650 bp · −
ndhF · PQ059222.1 · 109,707–111,968 bp · −
ndhD · PQ059222.1 · 114,327–115,856 bp · −
psaC · PQ059222.1 · 115,956–116,201 bp · −
ndhE · PQ059222.1 · 116,453–116,758 bp · −
ndhG · PQ059222.1 · 116,975–117,505 bp · −
ndhI · PQ059222.1 · 117,872–118,372 bp · −
ndhA · PQ059222.1 · 118,453–120,580 bp · −
ndhH · PQ059222.1 · 120,582–121,763 bp · −
rps15 · PQ059222.1 · 121,860–122,132 bp · −
ycf1 · PQ059222.1 · 122,334–127,973 bp · −
trnR-ACG · PQ059222.1 · 128,812–128,885 bp · −
rrn5 · PQ059222.1 · 129,120–129,240 bp · −
rrn4.5 · PQ059222.1 · 129,488–129,590 bp · −
rrn23 · PQ059222.1 · 129,689–132,500 bp · −
trnA-UGC · PQ059222.1 · 132,670–133,557 bp · −
trnI-GAU · PQ059222.1 · 133,622–134,642 bp · −
rrn16 · PQ059222.1 · 134,941–136,431 bp · −
trnV-GAC · PQ059222.1 · 136,658–136,729 bp · −
ycf15 · PQ059222.1 · 142,981–143,178 bp · −
ycf2 · PQ059222.1 · 143,320–150,129 bp · −
psbK · PQ059222.1 · 7,847–8,032 bp · +
psbI · PQ059222.1 · 8,420–8,530 bp · +
trnG-UCC · PQ059222.1 · 9,434–10,190 bp · +
trnR-UCU · PQ059222.1 · 10,365–10,436 bp · +
trnC-GCA · PQ059222.1 · 28,575–28,645 bp · +
petN · PQ059222.1 · 29,359–29,448 bp · +
trnT-GGU · PQ059222.1 · 32,192–32,263 bp · +
psbD · PQ059222.1 · 33,567–34,628 bp · +
psbC · PQ059222.1 · 34,576–35,997 bp · +
psbZ · PQ059222.1 · 36,641–36,829 bp · +
trnG-GCC · PQ059222.1 · 37,104–37,174 bp · +
trnS-GGA · PQ059222.1 · 45,969–46,055 bp · +
trnL-UAA · PQ059222.1 · 48,041–48,600 bp · +
trnF-GAA · PQ059222.1 · 48,907–48,979 bp · +
trnM-CAU · PQ059222.1 · 53,122–53,194 bp · +
rbcL · PQ059222.1 · 56,025–57,488 bp · +
accD · PQ059222.1 · 58,213–59,691 bp · +
ycf4 · PQ059222.1 · 60,941–61,495 bp · +
cemA · PQ059222.1 · 62,244–62,843 bp · +
petA · PQ059222.1 · 63,050–64,012 bp · +
petL · PQ059222.1 · 66,679–66,774 bp · +
petG · PQ059222.1 · 66,950–67,063 bp · +
psaJ · PQ059222.1 · 67,770–67,904 bp · +
rpl33 · PQ059222.1 · 68,381–68,581 bp · +
rps18 · PQ059222.1 · 68,755–69,060 bp · +
rps12 · PQ059222.1 · 138,301–139,091 bp · +
psbB · PQ059222.1 · 73,111–74,637 bp · +
psbT · PQ059222.1 · 74,828–74,935 bp · +
psbH · PQ059222.1 · 75,231–75,452 bp · +
petB · PQ059222.1 · 75,577–76,949 bp · +
petD · PQ059222.1 · 77,132–78,337 bp · +
ycf2 · PQ059222.1 · 86,713–93,522 bp · +
ycf15 · PQ059222.1 · 93,664–93,861 bp · +
trnV-GAC · PQ059222.1 · 100,113–100,184 bp · +
rrn16 · PQ059222.1 · 100,411–101,901 bp · +
trnI-GAU · PQ059222.1 · 102,200–103,220 bp · +
ycf68 · PQ059222.1 · 102,355–102,648 bp · +
trnA-UGC · PQ059222.1 · 103,285–104,172 bp · +
rrn23 · PQ059222.1 · 104,342–107,153 bp · +
rrn4.5 · PQ059222.1 · 107,252–107,354 bp · +
rrn5 · PQ059222.1 · 107,602–107,722 bp · +
trnR-ACG · PQ059222.1 · 107,957–108,030 bp · +
rpl32 · PQ059222.1 · 112,296–112,472 bp · +
trnL-UAG · PQ059222.1 · 112,919–112,998 bp · +
ccsA · PQ059222.1 · 113,096–114,070 bp · +
trnN-GUU · PQ059222.1 · 128,192–128,263 bp · +
rps7 · PQ059222.1 · 139,145–139,612 bp · +
ndhB · PQ059222.1 · 139,941–142,098 bp · +
trnL-CAA · PQ059222.1 · 142,641–142,721 bp · +
trnI-CAU · PQ059222.1 · 150,218–150,291 bp · +
rpl23 · PQ059222.1 · 150,451–150,732 bp · +
rpl2 · PQ059222.1 · 150,751–152,232 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria glutinosa
ANNOTATED PLASTOME
PQ059222.1
152,332 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38083 76166 114249 152332 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU ycf68 trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1682 4256 2575 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUG gene − 7451 7522 72 Locate
psbK gene + 7847 8032 186 Locate
psbI gene + 8420 8530 111 Locate
trnS-GCU gene − 8648 8735 88 Locate
trnG-UCC gene + 9434 10190 757 Locate
trnR-UCU gene + 10365 10436 72 Locate
atpA gene − 10533 12056 1524 Locate
atpF gene − 12139 13368 1230 Locate
atpH gene − 13730 13975 246 Locate
atpI gene − 14963 15706 744 Locate
rps2 gene − 16052 16762 711 Locate
rpoC2 gene − 16977 21182 4206 Locate
rpoC1 gene − 21337 24175 2839 Locate
rpoB gene − 24202 27414 3213 Locate
trnC-GCA gene + 28575 28645 71 Locate
petN gene + 29359 29448 90 Locate
psbM gene − 30584 30688 105 Locate
trnD-GUC gene − 31214 31287 74 Locate
trnY-GUA gene − 31401 31484 84 Locate
trnE-UUC gene − 31544 31616 73 Locate
trnT-GGU gene + 32192 32263 72 Locate
psbD gene + 33567 34628 1062 Locate
psbC gene + 34576 35997 1422 Locate
trnS-UGA gene − 36234 36325 92 Locate
psbZ gene + 36641 36829 189 Locate
trnG-GCC gene + 37104 37174 71 Locate
trnfM-CAU gene − 37321 37394 74 Locate
rps14 gene − 37549 37851 303 Locate
psaB gene − 37979 40183 2205 Locate
psaA gene − 40209 42461 2253 Locate
ycf3 gene − 43159 45080 1922 Locate
trnS-GGA gene + 45969 46055 87 Locate
rps4 gene − 46331 46936 606 Locate
trnT-UGU gene − 47278 47350 73 Locate
trnL-UAA gene + 48041 48600 560 Locate
trnF-GAA gene + 48907 48979 73 Locate
ndhJ gene − 49626 50102 477 Locate
ndhK gene − 50211 50888 678 Locate
ndhC gene − 50942 51304 363 Locate
trnV-UAC gene − 52281 52933 653 Locate
trnM-CAU gene + 53122 53194 73 Locate
atpE gene − 53388 53789 402 Locate
atpB gene − 53786 55282 1497 Locate
rbcL gene + 56025 57488 1464 Locate
accD gene + 58213 59691 1479 Locate
ycf4 gene + 60941 61495 555 Locate
cemA gene + 62244 62843 600 Locate
petA gene + 63050 64012 963 Locate
psbJ gene − 65021 65143 123 Locate
psbL gene − 65277 65393 117 Locate
psbF gene − 65417 65536 120 Locate
psbE gene − 65551 65802 252 Locate
petL gene + 66679 66774 96 Locate
petG gene + 66950 67063 114 Locate
trnW-CCA gene − 67182 67255 74 Locate
trnP-UGG gene − 67425 67498 74 Locate
psaJ gene + 67770 67904 135 Locate
rpl33 gene + 68381 68581 201 Locate
rps18 gene + 68755 69060 306 Locate
rpl20 gene − 69294 69680 387 Locate
rps12 gene − 70475 70588 114 Locate
clpP gene − 70730 72659 1930 Locate
psbB gene + 73111 74637 1527 Locate
psbT gene + 74828 74935 108 Locate
psbN gene − 74996 75127 132 Locate
psbH gene + 75231 75452 222 Locate
petB gene + 75577 76949 1373 Locate
petD gene + 77132 78337 1206 Locate
rpoA gene − 78692 79492 801 Locate
rps11 gene − 79570 79986 417 Locate
rpl36 gene − 80088 80201 114 Locate
infA gene − 80296 80529 234 Locate
rps8 gene − 80652 81062 411 Locate
rpl14 gene − 81214 81582 369 Locate
rpl16 gene − 81709 82942 1234 Locate
rps3 gene − 83098 83760 663 Locate
rpl22 gene − 83762 84217 456 Locate
rps19 gene − 84277 84555 279 Locate
rpl2 gene − 84610 86091 1482 Locate
rpl23 gene − 86110 86391 282 Locate
trnI-CAU gene − 86551 86624 74 Locate
ycf2 gene + 86713 93522 6810 Locate
ycf15 gene + 93664 93861 198 Locate
trnL-CAA gene − 94121 94201 81 Locate
ndhB gene − 94744 96901 2158 Locate
rps7 gene − 97230 97697 468 Locate
rps12 gene − 97751 98541 791 Locate
trnV-GAC gene + 100113 100184 72 Locate
rrn16 gene + 100411 101901 1491 Locate
trnI-GAU gene + 102200 103220 1021 Locate
ycf68 gene + 102355 102648 294 Locate
trnA-UGC gene + 103285 104172 888 Locate
rrn23 gene + 104342 107153 2812 Locate
rrn4.5 gene + 107252 107354 103 Locate
rrn5 gene + 107602 107722 121 Locate
trnR-ACG gene + 107957 108030 74 Locate
trnN-GUU gene − 108579 108650 72 Locate
ndhF gene − 109707 111968 2262 Locate
rpl32 gene + 112296 112472 177 Locate
trnL-UAG gene + 112919 112998 80 Locate
ccsA gene + 113096 114070 975 Locate
ndhD gene − 114327 115856 1530 Locate
psaC gene − 115956 116201 246 Locate
ndhE gene − 116453 116758 306 Locate
ndhG gene − 116975 117505 531 Locate
ndhI gene − 117872 118372 501 Locate
ndhA gene − 118453 120580 2128 Locate
ndhH gene − 120582 121763 1182 Locate
rps15 gene − 121860 122132 273 Locate
ycf1 gene − 122334 127973 5640 Locate
trnN-GUU gene + 128192 128263 72 Locate
trnR-ACG gene − 128812 128885 74 Locate
rrn5 gene − 129120 129240 121 Locate
rrn4.5 gene − 129488 129590 103 Locate
rrn23 gene − 129689 132500 2812 Locate
trnA-UGC gene − 132670 133557 888 Locate
trnI-GAU gene − 133622 134642 1021 Locate
rrn16 gene − 134941 136431 1491 Locate
trnV-GAC gene − 136658 136729 72 Locate
rps12 gene + 138301 139091 791 Locate
rps7 gene + 139145 139612 468 Locate
ndhB gene + 139941 142098 2158 Locate
trnL-CAA gene + 142641 142721 81 Locate
ycf15 gene − 142981 143178 198 Locate
ycf2 gene − 143320 150129 6810 Locate
trnI-CAU gene + 150218 150291 74 Locate
rpl23 gene + 150451 150732 282 Locate
rpl2 gene + 150751 152232 1482 Locate
Status Available
Accession PQ059222.1
Length 152,332 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources