Scutellaria grandiflora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058243.1 · 4–77 bp · −
psbA · PQ058243.1 · 374–1,432 bp · −
trnK-UUU · PQ058243.1 · 1,674–4,255 bp · −
matK · PQ058243.1 · 1,964–3,490 bp · −
rps16 · PQ058243.1 · 5,157–6,316 bp · −
trnQ-UUG · PQ058243.1 · 7,082–7,153 bp · −
trnS-GCU · PQ058243.1 · 8,280–8,367 bp · −
atpA · PQ058243.1 · 10,166–11,689 bp · −
atpF · PQ058243.1 · 11,771–13,005 bp · −
atpH · PQ058243.1 · 13,366–13,611 bp · −
atpI · PQ058243.1 · 14,639–15,382 bp · −
rps2 · PQ058243.1 · 15,729–16,439 bp · −
rpoC2 · PQ058243.1 · 16,656–20,861 bp · −
rpoC1 · PQ058243.1 · 21,016–23,852 bp · −
rpoB · PQ058243.1 · 23,879–27,091 bp · −
psbM · PQ058243.1 · 30,136–30,240 bp · −
trnD-GUC · PQ058243.1 · 30,766–30,839 bp · −
trnY-GUA · PQ058243.1 · 30,953–31,036 bp · −
trnE-UUC · PQ058243.1 · 31,096–31,168 bp · −
trnS-UGA · PQ058243.1 · 35,786–35,877 bp · −
trnfM-CAU · PQ058243.1 · 36,874–36,947 bp · −
rps14 · PQ058243.1 · 37,102–37,404 bp · −
psaB · PQ058243.1 · 37,533–39,737 bp · −
psaA · PQ058243.1 · 39,763–42,015 bp · −
ycf3 · PQ058243.1 · 42,704–44,626 bp · −
rps4 · PQ058243.1 · 45,871–46,476 bp · −
trnT-UGU · PQ058243.1 · 46,821–46,893 bp · −
ndhJ · PQ058243.1 · 49,158–49,634 bp · −
ndhK · PQ058243.1 · 49,743–50,420 bp · −
ndhC · PQ058243.1 · 50,473–50,835 bp · −
trnV-UAC · PQ058243.1 · 51,822–52,474 bp · −
atpE · PQ058243.1 · 52,929–53,330 bp · −
atpB · PQ058243.1 · 53,327–54,823 bp · −
psbJ · PQ058243.1 · 64,555–64,677 bp · −
psbL · PQ058243.1 · 64,811–65,032 bp · −
psbF · PQ058243.1 · 64,951–65,070 bp · −
psbE · PQ058243.1 · 65,085–65,336 bp · −
trnW-CCA · PQ058243.1 · 66,716–66,789 bp · −
trnP-UGG · PQ058243.1 · 66,959–67,032 bp · −
rpl20 · PQ058243.1 · 68,824–69,210 bp · −
rps12 · PQ058243.1 · 70,005–70,118 bp · −
rps12 · PQ058243.1 · 97,267–98,057 bp · −
clpP · PQ058243.1 · 70,260–72,189 bp · −
psbN · PQ058243.1 · 74,527–74,658 bp · −
rpoA · PQ058243.1 · 78,199–79,020 bp · −
rps11 · PQ058243.1 · 79,092–79,508 bp · −
rpl36 · PQ058243.1 · 79,610–79,723 bp · −
infA · PQ058243.1 · 79,818–80,051 bp · −
rps8 · PQ058243.1 · 80,175–80,585 bp · −
rpl14 · PQ058243.1 · 80,737–81,105 bp · −
rpl16 · PQ058243.1 · 81,231–82,467 bp · −
rps3 · PQ058243.1 · 82,623–83,285 bp · −
rpl22 · PQ058243.1 · 83,287–83,742 bp · −
rps19 · PQ058243.1 · 83,802–84,080 bp · −
rpl2 · PQ058243.1 · 84,135–85,616 bp · −
rpl23 · PQ058243.1 · 85,635–85,916 bp · −
trnI-CAU · PQ058243.1 · 86,076–86,149 bp · −
trnL-CAA · PQ058243.1 · 93,637–93,717 bp · −
ndhB · PQ058243.1 · 94,260–96,417 bp · −
rps7 · PQ058243.1 · 96,746–97,213 bp · −
trnN-GUU · PQ058243.1 · 108,093–108,164 bp · −
ndhF · PQ058243.1 · 109,221–111,482 bp · −
ndhD · PQ058243.1 · 113,844–115,373 bp · −
psaC · PQ058243.1 · 115,475–115,720 bp · −
ndhE · PQ058243.1 · 115,976–116,281 bp · −
ndhG · PQ058243.1 · 116,498–117,028 bp · −
ndhI · PQ058243.1 · 117,395–117,895 bp · −
ndhA · PQ058243.1 · 117,981–120,102 bp · −
ndhH · PQ058243.1 · 120,104–121,285 bp · −
rps15 · PQ058243.1 · 121,382–121,654 bp · −
ycf1 · PQ058243.1 · 121,852–127,488 bp · −
trnR-ACG · PQ058243.1 · 128,327–128,400 bp · −
rrn5 · PQ058243.1 · 128,635–128,755 bp · −
rrn4.5 · PQ058243.1 · 129,003–129,105 bp · −
rrn23 · PQ058243.1 · 129,204–132,015 bp · −
trnA-UGC · PQ058243.1 · 132,185–133,070 bp · −
trnI-GAU · PQ058243.1 · 133,135–134,155 bp · −
ycf68 · PQ058243.1 · 133,707–134,000 bp · −
rrn16 · PQ058243.1 · 134,454–135,944 bp · −
trnV-GAC · PQ058243.1 · 136,171–136,242 bp · −
ycf15 · PQ058243.1 · 142,494–142,742 bp · −
ycf2 · PQ058243.1 · 142,833–149,633 bp · −
psbK · PQ058243.1 · 7,478–7,663 bp · +
psbI · PQ058243.1 · 8,053–8,163 bp · +
trnG-UCC · PQ058243.1 · 9,067–9,823 bp · +
trnR-UCU · PQ058243.1 · 9,998–10,069 bp · +
trnC-GCA · PQ058243.1 · 28,252–28,322 bp · +
petN · PQ058243.1 · 29,036–29,125 bp · +
trnT-GGU · PQ058243.1 · 31,744–31,815 bp · +
psbD · PQ058243.1 · 33,120–34,181 bp · +
psbC · PQ058243.1 · 34,129–35,550 bp · +
psbZ · PQ058243.1 · 36,193–36,381 bp · +
trnG-GCC · PQ058243.1 · 36,659–36,729 bp · +
trnS-GGA · PQ058243.1 · 45,509–45,595 bp · +
trnL-UAA · PQ058243.1 · 47,575–48,134 bp · +
trnF-GAA · PQ058243.1 · 48,437–48,509 bp · +
trnM-CAU · PQ058243.1 · 52,663–52,735 bp · +
rbcL · PQ058243.1 · 55,574–57,037 bp · +
accD · PQ058243.1 · 57,751–59,229 bp · +
psaI · PQ058243.1 · 59,936–60,046 bp · +
ycf4 · PQ058243.1 · 60,480–61,034 bp · +
cemA · PQ058243.1 · 61,783–62,382 bp · +
petA · PQ058243.1 · 62,584–63,546 bp · +
petL · PQ058243.1 · 66,213–66,308 bp · +
petG · PQ058243.1 · 66,484–66,597 bp · +
psaJ · PQ058243.1 · 67,241–67,438 bp · +
rpl33 · PQ058243.1 · 67,909–68,109 bp · +
rps18 · PQ058243.1 · 68,284–68,589 bp · +
rps12 · PQ058243.1 · 137,814–138,604 bp · +
psbB · PQ058243.1 · 72,641–74,167 bp · +
psbT · PQ058243.1 · 74,359–74,466 bp · +
psbH · PQ058243.1 · 74,762–74,983 bp · +
petB · PQ058243.1 · 75,108–76,477 bp · +
petD · PQ058243.1 · 76,660–77,866 bp · +
ycf2 · PQ058243.1 · 86,238–93,038 bp · +
ycf15 · PQ058243.1 · 93,129–93,377 bp · +
trnV-GAC · PQ058243.1 · 99,629–99,700 bp · +
rrn16 · PQ058243.1 · 99,927–101,417 bp · +
trnI-GAU · PQ058243.1 · 101,716–102,736 bp · +
trnA-UGC · PQ058243.1 · 102,801–103,686 bp · +
rrn23 · PQ058243.1 · 103,856–106,667 bp · +
rrn4.5 · PQ058243.1 · 106,766–106,868 bp · +
rrn5 · PQ058243.1 · 107,116–107,236 bp · +
trnR-ACG · PQ058243.1 · 107,471–107,544 bp · +
rpl32 · PQ058243.1 · 111,810–111,986 bp · +
trnL-UAG · PQ058243.1 · 112,431–112,510 bp · +
ccsA · PQ058243.1 · 112,612–113,586 bp · +
trnN-GUU · PQ058243.1 · 127,707–127,778 bp · +
rps7 · PQ058243.1 · 138,658–139,125 bp · +
ndhB · PQ058243.1 · 139,454–141,611 bp · +
trnL-CAA · PQ058243.1 · 142,154–142,234 bp · +
trnI-CAU · PQ058243.1 · 149,722–149,795 bp · +
rpl23 · PQ058243.1 · 149,955–150,236 bp · +
rpl2 · PQ058243.1 · 150,255–151,736 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria grandiflora
ANNOTATED PLASTOME
PQ058243.1
151,836 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37959 75918 113877 151836 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUG gene − 7082 7153 72 Locate
psbK gene + 7478 7663 186 Locate
psbI gene + 8053 8163 111 Locate
trnS-GCU gene − 8280 8367 88 Locate
trnG-UCC gene + 9067 9823 757 Locate
trnR-UCU gene + 9998 10069 72 Locate
atpA gene − 10166 11689 1524 Locate
atpF gene − 11771 13005 1235 Locate
atpH gene − 13366 13611 246 Locate
atpI gene − 14639 15382 744 Locate
rps2 gene − 15729 16439 711 Locate
rpoC2 gene − 16656 20861 4206 Locate
rpoC1 gene − 21016 23852 2837 Locate
rpoB gene − 23879 27091 3213 Locate
trnC-GCA gene + 28252 28322 71 Locate
petN gene + 29036 29125 90 Locate
psbM gene − 30136 30240 105 Locate
trnD-GUC gene − 30766 30839 74 Locate
trnY-GUA gene − 30953 31036 84 Locate
trnE-UUC gene − 31096 31168 73 Locate
trnT-GGU gene + 31744 31815 72 Locate
psbD gene + 33120 34181 1062 Locate
psbC gene + 34129 35550 1422 Locate
trnS-UGA gene − 35786 35877 92 Locate
psbZ gene + 36193 36381 189 Locate
trnG-GCC gene + 36659 36729 71 Locate
trnfM-CAU gene − 36874 36947 74 Locate
rps14 gene − 37102 37404 303 Locate
psaB gene − 37533 39737 2205 Locate
psaA gene − 39763 42015 2253 Locate
ycf3 gene − 42704 44626 1923 Locate
trnS-GGA gene + 45509 45595 87 Locate
rps4 gene − 45871 46476 606 Locate
trnT-UGU gene − 46821 46893 73 Locate
trnL-UAA gene + 47575 48134 560 Locate
trnF-GAA gene + 48437 48509 73 Locate
ndhJ gene − 49158 49634 477 Locate
ndhK gene − 49743 50420 678 Locate
ndhC gene − 50473 50835 363 Locate
trnV-UAC gene − 51822 52474 653 Locate
trnM-CAU gene + 52663 52735 73 Locate
atpE gene − 52929 53330 402 Locate
atpB gene − 53327 54823 1497 Locate
rbcL gene + 55574 57037 1464 Locate
accD gene + 57751 59229 1479 Locate
psaI gene + 59936 60046 111 Locate
ycf4 gene + 60480 61034 555 Locate
cemA gene + 61783 62382 600 Locate
petA gene + 62584 63546 963 Locate
psbJ gene − 64555 64677 123 Locate
psbL gene − 64811 65032 222 Locate
psbF gene − 64951 65070 120 Locate
psbE gene − 65085 65336 252 Locate
petL gene + 66213 66308 96 Locate
petG gene + 66484 66597 114 Locate
trnW-CCA gene − 66716 66789 74 Locate
trnP-UGG gene − 66959 67032 74 Locate
psaJ gene + 67241 67438 198 Locate
rpl33 gene + 67909 68109 201 Locate
rps18 gene + 68284 68589 306 Locate
rpl20 gene − 68824 69210 387 Locate
rps12 gene − 70005 70118 114 Locate
clpP gene − 70260 72189 1930 Locate
psbB gene + 72641 74167 1527 Locate
psbT gene + 74359 74466 108 Locate
psbN gene − 74527 74658 132 Locate
psbH gene + 74762 74983 222 Locate
petB gene + 75108 76477 1370 Locate
petD gene + 76660 77866 1207 Locate
rpoA gene − 78199 79020 822 Locate
rps11 gene − 79092 79508 417 Locate
rpl36 gene − 79610 79723 114 Locate
infA gene − 79818 80051 234 Locate
rps8 gene − 80175 80585 411 Locate
rpl14 gene − 80737 81105 369 Locate
rpl16 gene − 81231 82467 1237 Locate
rps3 gene − 82623 83285 663 Locate
rpl22 gene − 83287 83742 456 Locate
rps19 gene − 83802 84080 279 Locate
rpl2 gene − 84135 85616 1482 Locate
rpl23 gene − 85635 85916 282 Locate
trnI-CAU gene − 86076 86149 74 Locate
ycf2 gene + 86238 93038 6801 Locate
ycf15 gene + 93129 93377 249 Locate
trnL-CAA gene − 93637 93717 81 Locate
ndhB gene − 94260 96417 2158 Locate
rps7 gene − 96746 97213 468 Locate
rps12 gene − 97267 98057 791 Locate
trnV-GAC gene + 99629 99700 72 Locate
rrn16 gene + 99927 101417 1491 Locate
trnI-GAU gene + 101716 102736 1021 Locate
trnA-UGC gene + 102801 103686 886 Locate
rrn23 gene + 103856 106667 2812 Locate
rrn4.5 gene + 106766 106868 103 Locate
rrn5 gene + 107116 107236 121 Locate
trnR-ACG gene + 107471 107544 74 Locate
trnN-GUU gene − 108093 108164 72 Locate
ndhF gene − 109221 111482 2262 Locate
rpl32 gene + 111810 111986 177 Locate
trnL-UAG gene + 112431 112510 80 Locate
ccsA gene + 112612 113586 975 Locate
ndhD gene − 113844 115373 1530 Locate
psaC gene − 115475 115720 246 Locate
ndhE gene − 115976 116281 306 Locate
ndhG gene − 116498 117028 531 Locate
ndhI gene − 117395 117895 501 Locate
ndhA gene − 117981 120102 2122 Locate
ndhH gene − 120104 121285 1182 Locate
rps15 gene − 121382 121654 273 Locate
ycf1 gene − 121852 127488 5637 Locate
trnN-GUU gene + 127707 127778 72 Locate
trnR-ACG gene − 128327 128400 74 Locate
rrn5 gene − 128635 128755 121 Locate
rrn4.5 gene − 129003 129105 103 Locate
rrn23 gene − 129204 132015 2812 Locate
trnA-UGC gene − 132185 133070 886 Locate
trnI-GAU gene − 133135 134155 1021 Locate
ycf68 gene − 133707 134000 294 Locate
rrn16 gene − 134454 135944 1491 Locate
trnV-GAC gene − 136171 136242 72 Locate
rps12 gene + 137814 138604 791 Locate
rps7 gene + 138658 139125 468 Locate
ndhB gene + 139454 141611 2158 Locate
trnL-CAA gene + 142154 142234 81 Locate
ycf15 gene − 142494 142742 249 Locate
ycf2 gene − 142833 149633 6801 Locate
trnI-CAU gene + 149722 149795 74 Locate
rpl23 gene + 149955 150236 282 Locate
rpl2 gene + 150255 151736 1482 Locate
Status Available
Accession PQ058243.1
Length 151,836 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources