Scutellaria grossa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059197.1 · 4–77 bp · −
psbA · PQ059197.1 · 394–1,452 bp · −
trnK-UUU · PQ059197.1 · 1,694–4,287 bp · −
matK · PQ059197.1 · 1,983–3,527 bp · −
rps16 · PQ059197.1 · 5,194–6,366 bp · −
trnQ-UUG · PQ059197.1 · 7,462–7,533 bp · −
trnS-GCU · PQ059197.1 · 8,651–8,738 bp · −
atpA · PQ059197.1 · 10,519–12,042 bp · −
atpF · PQ059197.1 · 12,126–13,354 bp · −
atpH · PQ059197.1 · 13,723–13,968 bp · −
atpI · PQ059197.1 · 14,963–15,706 bp · −
rps2 · PQ059197.1 · 16,054–16,764 bp · −
rpoC2 · PQ059197.1 · 16,982–21,181 bp · −
rpoC1 · PQ059197.1 · 21,336–24,154 bp · −
rpoB · PQ059197.1 · 24,181–27,393 bp · −
psbM · PQ059197.1 · 30,479–30,583 bp · −
trnD-GUC · PQ059197.1 · 31,115–31,188 bp · −
trnY-GUA · PQ059197.1 · 31,302–31,385 bp · −
trnE-UUC · PQ059197.1 · 31,445–31,517 bp · −
trnS-UGA · PQ059197.1 · 36,142–36,233 bp · −
trnfM-CAU · PQ059197.1 · 37,230–37,303 bp · −
rps14 · PQ059197.1 · 37,453–37,755 bp · −
psaB · PQ059197.1 · 37,886–40,090 bp · −
psaA · PQ059197.1 · 40,116–42,368 bp · −
ycf3 · PQ059197.1 · 43,071–44,996 bp · −
rps4 · PQ059197.1 · 46,242–46,847 bp · −
trnT-UGU · PQ059197.1 · 47,187–47,259 bp · −
ndhJ · PQ059197.1 · 49,522–49,998 bp · −
ndhK · PQ059197.1 · 50,103–50,780 bp · −
ndhC · PQ059197.1 · 50,833–51,195 bp · −
trnV-UAC · PQ059197.1 · 52,184–52,842 bp · −
atpE · PQ059197.1 · 53,304–53,705 bp · −
atpB · PQ059197.1 · 53,702–55,198 bp · −
psbJ · PQ059197.1 · 64,362–64,484 bp · −
psbL · PQ059197.1 · 64,618–64,839 bp · −
psbF · PQ059197.1 · 64,758–64,877 bp · −
psbE · PQ059197.1 · 64,892–65,143 bp · −
trnW-CCA · PQ059197.1 · 66,560–66,633 bp · −
trnP-UGG · PQ059197.1 · 66,803–66,876 bp · −
rpl20 · PQ059197.1 · 68,678–69,064 bp · −
rps12 · PQ059197.1 · 69,847–69,972 bp · −
rps12 · PQ059197.1 · 97,165–97,955 bp · −
clpP · PQ059197.1 · 70,114–72,050 bp · −
psbN · PQ059197.1 · 74,378–74,509 bp · −
rpoA · PQ059197.1 · 78,076–78,900 bp · −
rps11 · PQ059197.1 · 78,972–79,388 bp · −
rpl36 · PQ059197.1 · 79,490–79,603 bp · −
infA · PQ059197.1 · 79,699–79,932 bp · −
rps8 · PQ059197.1 · 80,056–80,466 bp · −
rpl14 · PQ059197.1 · 80,629–80,997 bp · −
rpl16 · PQ059197.1 · 81,124–82,354 bp · −
rps3 · PQ059197.1 · 82,509–83,171 bp · −
rpl22 · PQ059197.1 · 83,173–83,628 bp · −
rps19 · PQ059197.1 · 83,688–83,966 bp · −
rpl2 · PQ059197.1 · 84,022–85,504 bp · −
rpl23 · PQ059197.1 · 85,523–85,804 bp · −
trnI-CAU · PQ059197.1 · 85,964–86,037 bp · −
trnL-CAA · PQ059197.1 · 93,535–93,615 bp · −
ndhB · PQ059197.1 · 94,158–96,369 bp · −
rps7 · PQ059197.1 · 96,644–97,111 bp · −
trnN-GUU · PQ059197.1 · 107,994–108,065 bp · −
ndhF · PQ059197.1 · 109,142–111,382 bp · −
ndhD · PQ059197.1 · 113,882–115,384 bp · −
psaC · PQ059197.1 · 115,514–115,759 bp · −
ndhE · PQ059197.1 · 116,015–116,320 bp · −
ndhG · PQ059197.1 · 116,544–117,074 bp · −
ndhI · PQ059197.1 · 117,423–117,923 bp · −
ndhA · PQ059197.1 · 118,004–120,113 bp · −
ndhH · PQ059197.1 · 120,115–121,326 bp · −
rps15 · PQ059197.1 · 121,393–121,665 bp · −
ycf1 · PQ059197.1 · 121,934–127,609 bp · −
trnR-ACG · PQ059197.1 · 128,455–128,528 bp · −
rrn5 · PQ059197.1 · 128,763–128,883 bp · −
rrn4.5 · PQ059197.1 · 129,131–129,233 bp · −
rrn23 · PQ059197.1 · 129,332–132,143 bp · −
trnA-UGC · PQ059197.1 · 132,313–133,199 bp · −
trnI-GAU · PQ059197.1 · 133,264–134,282 bp · −
ycf68 · PQ059197.1 · 133,834–134,127 bp · −
rrn16 · PQ059197.1 · 134,581–136,071 bp · −
trnV-GAC · PQ059197.1 · 136,294–136,365 bp · −
ycf15 · PQ059197.1 · 142,619–142,816 bp · −
ycf2 · PQ059197.1 · 142,958–149,767 bp · −
psbK · PQ059197.1 · 7,858–8,043 bp · +
psbI · PQ059197.1 · 8,441–8,551 bp · +
trnG-UCC · PQ059197.1 · 9,430–10,185 bp · +
trnR-UCU · PQ059197.1 · 10,351–10,422 bp · +
trnC-GCA · PQ059197.1 · 28,570–28,640 bp · +
petN · PQ059197.1 · 29,394–29,483 bp · +
trnT-GGU · PQ059197.1 · 32,089–32,160 bp · +
psbD · PQ059197.1 · 33,477–34,538 bp · +
psbC · PQ059197.1 · 34,486–35,907 bp · +
psbZ · PQ059197.1 · 36,553–36,741 bp · +
trnG-GCC · PQ059197.1 · 37,014–37,084 bp · +
trnS-GGA · PQ059197.1 · 45,872–45,958 bp · +
trnL-UAA · PQ059197.1 · 47,927–48,493 bp · +
trnF-GAA · PQ059197.1 · 48,799–48,871 bp · +
trnM-CAU · PQ059197.1 · 53,023–53,095 bp · +
rbcL · PQ059197.1 · 55,946–57,409 bp · +
accD · PQ059197.1 · 58,136–59,626 bp · +
psaI · PQ059197.1 · 59,865–59,975 bp · +
ycf4 · PQ059197.1 · 60,409–60,963 bp · +
cemA · PQ059197.1 · 61,577–62,176 bp · +
petA · PQ059197.1 · 62,383–63,345 bp · +
petL · PQ059197.1 · 66,067–66,162 bp · +
petG · PQ059197.1 · 66,338–66,451 bp · +
psaJ · PQ059197.1 · 67,149–67,283 bp · +
rpl33 · PQ059197.1 · 67,757–67,957 bp · +
rps18 · PQ059197.1 · 68,132–68,437 bp · +
rps12 · PQ059197.1 · 137,938–138,728 bp · +
psbB · PQ059197.1 · 72,504–74,030 bp · +
psbT · PQ059197.1 · 74,210–74,317 bp · +
psbH · PQ059197.1 · 74,613–74,834 bp · +
petB · PQ059197.1 · 74,959–76,323 bp · +
petD · PQ059197.1 · 76,512–77,723 bp · +
ycf2 · PQ059197.1 · 86,126–92,935 bp · +
ycf15 · PQ059197.1 · 93,077–93,274 bp · +
trnV-GAC · PQ059197.1 · 99,528–99,599 bp · +
rrn16 · PQ059197.1 · 99,822–101,312 bp · +
trnI-GAU · PQ059197.1 · 101,611–102,629 bp · +
trnA-UGC · PQ059197.1 · 102,694–103,580 bp · +
rrn23 · PQ059197.1 · 103,750–106,561 bp · +
rrn4.5 · PQ059197.1 · 106,660–106,762 bp · +
rrn5 · PQ059197.1 · 107,010–107,130 bp · +
trnR-ACG · PQ059197.1 · 107,365–107,438 bp · +
rpl32 · PQ059197.1 · 111,869–112,072 bp · +
trnL-UAG · PQ059197.1 · 112,508–112,587 bp · +
ccsA · PQ059197.1 · 112,670–113,644 bp · +
trnN-GUU · PQ059197.1 · 127,828–127,899 bp · +
rps7 · PQ059197.1 · 138,782–139,249 bp · +
ndhB · PQ059197.1 · 139,524–141,735 bp · +
trnL-CAA · PQ059197.1 · 142,278–142,358 bp · +
trnI-CAU · PQ059197.1 · 149,856–149,929 bp · +
rpl23 · PQ059197.1 · 150,089–150,370 bp · +
rpl2 · PQ059197.1 · 150,389–151,871 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria grossa
ANNOTATED PLASTOME
PQ059197.1
151,967 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37992 75984 113975 151967 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 394 1452 1059 Locate
trnK-UUU gene − 1694 4287 2594 Locate
matK gene − 1983 3527 1545 Locate
rps16 gene − 5194 6366 1173 Locate
trnQ-UUG gene − 7462 7533 72 Locate
psbK gene + 7858 8043 186 Locate
psbI gene + 8441 8551 111 Locate
trnS-GCU gene − 8651 8738 88 Locate
trnG-UCC gene + 9430 10185 756 Locate
trnR-UCU gene + 10351 10422 72 Locate
atpA gene − 10519 12042 1524 Locate
atpF gene − 12126 13354 1229 Locate
atpH gene − 13723 13968 246 Locate
atpI gene − 14963 15706 744 Locate
rps2 gene − 16054 16764 711 Locate
rpoC2 gene − 16982 21181 4200 Locate
rpoC1 gene − 21336 24154 2819 Locate
rpoB gene − 24181 27393 3213 Locate
trnC-GCA gene + 28570 28640 71 Locate
petN gene + 29394 29483 90 Locate
psbM gene − 30479 30583 105 Locate
trnD-GUC gene − 31115 31188 74 Locate
trnY-GUA gene − 31302 31385 84 Locate
trnE-UUC gene − 31445 31517 73 Locate
trnT-GGU gene + 32089 32160 72 Locate
psbD gene + 33477 34538 1062 Locate
psbC gene + 34486 35907 1422 Locate
trnS-UGA gene − 36142 36233 92 Locate
psbZ gene + 36553 36741 189 Locate
trnG-GCC gene + 37014 37084 71 Locate
trnfM-CAU gene − 37230 37303 74 Locate
rps14 gene − 37453 37755 303 Locate
psaB gene − 37886 40090 2205 Locate
psaA gene − 40116 42368 2253 Locate
ycf3 gene − 43071 44996 1926 Locate
trnS-GGA gene + 45872 45958 87 Locate
rps4 gene − 46242 46847 606 Locate
trnT-UGU gene − 47187 47259 73 Locate
trnL-UAA gene + 47927 48493 567 Locate
trnF-GAA gene + 48799 48871 73 Locate
ndhJ gene − 49522 49998 477 Locate
ndhK gene − 50103 50780 678 Locate
ndhC gene − 50833 51195 363 Locate
trnV-UAC gene − 52184 52842 659 Locate
trnM-CAU gene + 53023 53095 73 Locate
atpE gene − 53304 53705 402 Locate
atpB gene − 53702 55198 1497 Locate
rbcL gene + 55946 57409 1464 Locate
accD gene + 58136 59626 1491 Locate
psaI gene + 59865 59975 111 Locate
ycf4 gene + 60409 60963 555 Locate
cemA gene + 61577 62176 600 Locate
petA gene + 62383 63345 963 Locate
psbJ gene − 64362 64484 123 Locate
psbL gene − 64618 64839 222 Locate
psbF gene − 64758 64877 120 Locate
psbE gene − 64892 65143 252 Locate
petL gene + 66067 66162 96 Locate
petG gene + 66338 66451 114 Locate
trnW-CCA gene − 66560 66633 74 Locate
trnP-UGG gene − 66803 66876 74 Locate
psaJ gene + 67149 67283 135 Locate
rpl33 gene + 67757 67957 201 Locate
rps18 gene + 68132 68437 306 Locate
rpl20 gene − 68678 69064 387 Locate
rps12 gene − 69847 69972 126 Locate
clpP gene − 70114 72050 1937 Locate
psbB gene + 72504 74030 1527 Locate
psbT gene + 74210 74317 108 Locate
psbN gene − 74378 74509 132 Locate
psbH gene + 74613 74834 222 Locate
petB gene + 74959 76323 1365 Locate
petD gene + 76512 77723 1212 Locate
rpoA gene − 78076 78900 825 Locate
rps11 gene − 78972 79388 417 Locate
rpl36 gene − 79490 79603 114 Locate
infA gene − 79699 79932 234 Locate
rps8 gene − 80056 80466 411 Locate
rpl14 gene − 80629 80997 369 Locate
rpl16 gene − 81124 82354 1231 Locate
rps3 gene − 82509 83171 663 Locate
rpl22 gene − 83173 83628 456 Locate
rps19 gene − 83688 83966 279 Locate
rpl2 gene − 84022 85504 1483 Locate
rpl23 gene − 85523 85804 282 Locate
trnI-CAU gene − 85964 86037 74 Locate
ycf2 gene + 86126 92935 6810 Locate
ycf15 gene + 93077 93274 198 Locate
trnL-CAA gene − 93535 93615 81 Locate
ndhB gene − 94158 96369 2212 Locate
rps7 gene − 96644 97111 468 Locate
rps12 gene − 97165 97955 791 Locate
trnV-GAC gene + 99528 99599 72 Locate
rrn16 gene + 99822 101312 1491 Locate
trnI-GAU gene + 101611 102629 1019 Locate
trnA-UGC gene + 102694 103580 887 Locate
rrn23 gene + 103750 106561 2812 Locate
rrn4.5 gene + 106660 106762 103 Locate
rrn5 gene + 107010 107130 121 Locate
trnR-ACG gene + 107365 107438 74 Locate
trnN-GUU gene − 107994 108065 72 Locate
ndhF gene − 109142 111382 2241 Locate
rpl32 gene + 111869 112072 204 Locate
trnL-UAG gene + 112508 112587 80 Locate
ccsA gene + 112670 113644 975 Locate
ndhD gene − 113882 115384 1503 Locate
psaC gene − 115514 115759 246 Locate
ndhE gene − 116015 116320 306 Locate
ndhG gene − 116544 117074 531 Locate
ndhI gene − 117423 117923 501 Locate
ndhA gene − 118004 120113 2110 Locate
ndhH gene − 120115 121326 1212 Locate
rps15 gene − 121393 121665 273 Locate
ycf1 gene − 121934 127609 5676 Locate
trnN-GUU gene + 127828 127899 72 Locate
trnR-ACG gene − 128455 128528 74 Locate
rrn5 gene − 128763 128883 121 Locate
rrn4.5 gene − 129131 129233 103 Locate
rrn23 gene − 129332 132143 2812 Locate
trnA-UGC gene − 132313 133199 887 Locate
trnI-GAU gene − 133264 134282 1019 Locate
ycf68 gene − 133834 134127 294 Locate
rrn16 gene − 134581 136071 1491 Locate
trnV-GAC gene − 136294 136365 72 Locate
rps12 gene + 137938 138728 791 Locate
rps7 gene + 138782 139249 468 Locate
ndhB gene + 139524 141735 2212 Locate
trnL-CAA gene + 142278 142358 81 Locate
ycf15 gene − 142619 142816 198 Locate
ycf2 gene − 142958 149767 6810 Locate
trnI-CAU gene + 149856 149929 74 Locate
rpl23 gene + 150089 150370 282 Locate
rpl2 gene + 150389 151871 1483 Locate
Status Available
Accession PQ059197.1
Length 151,967 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources