Scutellaria grossheimiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059204.1 · 4–77 bp · −
psbA · PQ059204.1 · 373–1,431 bp · −
trnK-UUU · PQ059204.1 · 1,673–4,254 bp · −
matK · PQ059204.1 · 1,963–3,489 bp · −
rps16 · PQ059204.1 · 5,156–6,314 bp · −
trnQ-UUG · PQ059204.1 · 7,060–7,131 bp · −
trnS-GCU · PQ059204.1 · 8,260–8,347 bp · −
atpA · PQ059204.1 · 10,147–11,670 bp · −
atpF · PQ059204.1 · 11,752–12,981 bp · −
atpH · PQ059204.1 · 13,342–13,587 bp · −
atpI · PQ059204.1 · 14,575–15,318 bp · −
rps2 · PQ059204.1 · 15,664–16,374 bp · −
rpoC2 · PQ059204.1 · 16,590–20,795 bp · −
rpoC1 · PQ059204.1 · 20,950–23,785 bp · −
rpoB · PQ059204.1 · 23,812–27,024 bp · −
psbM · PQ059204.1 · 30,056–30,160 bp · −
trnD-GUC · PQ059204.1 · 30,686–30,759 bp · −
trnY-GUA · PQ059204.1 · 30,873–30,956 bp · −
trnE-UUC · PQ059204.1 · 31,016–31,088 bp · −
trnS-UGA · PQ059204.1 · 35,707–35,798 bp · −
trnfM-CAU · PQ059204.1 · 36,796–36,869 bp · −
rps14 · PQ059204.1 · 37,024–37,326 bp · −
psaB · PQ059204.1 · 37,455–39,659 bp · −
psaA · PQ059204.1 · 39,685–41,937 bp · −
ycf3 · PQ059204.1 · 42,644–44,566 bp · −
rps4 · PQ059204.1 · 45,811–46,416 bp · −
trnT-UGU · PQ059204.1 · 46,758–46,830 bp · −
ndhJ · PQ059204.1 · 49,095–49,571 bp · −
ndhK · PQ059204.1 · 49,680–50,441 bp · −
ndhC · PQ059204.1 · 50,411–50,773 bp · −
trnV-UAC · PQ059204.1 · 51,759–52,411 bp · −
atpE · PQ059204.1 · 52,866–53,267 bp · −
atpB · PQ059204.1 · 53,264–54,760 bp · −
psbJ · PQ059204.1 · 64,496–64,618 bp · −
psbL · PQ059204.1 · 64,752–64,973 bp · −
psbF · PQ059204.1 · 64,892–65,011 bp · −
psbE · PQ059204.1 · 65,026–65,277 bp · −
trnW-CCA · PQ059204.1 · 66,658–66,731 bp · −
trnP-UGG · PQ059204.1 · 66,901–66,974 bp · −
rpl20 · PQ059204.1 · 68,779–69,165 bp · −
rps12 · PQ059204.1 · 69,948–70,073 bp · −
rps12 · PQ059204.1 · 97,222–98,012 bp · −
clpP · PQ059204.1 · 70,215–72,143 bp · −
psbN · PQ059204.1 · 74,481–74,612 bp · −
rpoA · PQ059204.1 · 78,176–78,976 bp · −
rps11 · PQ059204.1 · 79,048–79,464 bp · −
rpl36 · PQ059204.1 · 79,566–79,679 bp · −
infA · PQ059204.1 · 79,774–80,007 bp · −
rps8 · PQ059204.1 · 80,131–80,541 bp · −
rpl14 · PQ059204.1 · 80,694–81,062 bp · −
rpl16 · PQ059204.1 · 81,189–82,422 bp · −
rps3 · PQ059204.1 · 82,578–83,240 bp · −
rpl22 · PQ059204.1 · 83,242–83,697 bp · −
rps19 · PQ059204.1 · 83,757–84,035 bp · −
rpl2 · PQ059204.1 · 84,090–85,571 bp · −
rpl23 · PQ059204.1 · 85,590–85,871 bp · −
trnI-CAU · PQ059204.1 · 86,031–86,104 bp · −
trnL-CAA · PQ059204.1 · 93,592–93,672 bp · −
ndhB · PQ059204.1 · 94,215–96,426 bp · −
rps7 · PQ059204.1 · 96,701–97,168 bp · −
trnN-GUU · PQ059204.1 · 108,052–108,123 bp · −
ndhF · PQ059204.1 · 109,180–111,441 bp · −
ndhD · PQ059204.1 · 113,790–115,319 bp · −
psaC · PQ059204.1 · 115,420–115,665 bp · −
ndhE · PQ059204.1 · 115,921–116,226 bp · −
ndhG · PQ059204.1 · 116,443–116,973 bp · −
ndhI · PQ059204.1 · 117,340–117,840 bp · −
ndhA · PQ059204.1 · 117,926–120,047 bp · −
ndhH · PQ059204.1 · 120,049–121,260 bp · −
rps15 · PQ059204.1 · 121,327–121,599 bp · −
ycf1 · PQ059204.1 · 121,797–127,433 bp · −
trnR-ACG · PQ059204.1 · 128,272–128,345 bp · −
rrn5 · PQ059204.1 · 128,580–128,700 bp · −
rrn4.5 · PQ059204.1 · 128,948–129,050 bp · −
rrn23 · PQ059204.1 · 129,149–131,960 bp · −
trnA-UGC · PQ059204.1 · 132,131–133,019 bp · −
trnI-GAU · PQ059204.1 · 133,084–134,104 bp · −
ycf68 · PQ059204.1 · 133,656–133,949 bp · −
rrn16 · PQ059204.1 · 134,403–135,893 bp · −
trnV-GAC · PQ059204.1 · 136,120–136,191 bp · −
ycf15 · PQ059204.1 · 142,443–142,691 bp · −
ycf2 · PQ059204.1 · 142,782–149,582 bp · −
psbK · PQ059204.1 · 7,456–7,641 bp · +
psbI · PQ059204.1 · 8,032–8,142 bp · +
trnG-UCC · PQ059204.1 · 9,048–9,804 bp · +
trnR-UCU · PQ059204.1 · 9,979–10,050 bp · +
trnC-GCA · PQ059204.1 · 28,185–28,255 bp · +
petN · PQ059204.1 · 28,971–29,060 bp · +
trnT-GGU · PQ059204.1 · 31,664–31,735 bp · +
psbD · PQ059204.1 · 33,041–34,102 bp · +
psbC · PQ059204.1 · 34,050–35,471 bp · +
psbZ · PQ059204.1 · 36,114–36,302 bp · +
trnG-GCC · PQ059204.1 · 36,580–36,650 bp · +
trnS-GGA · PQ059204.1 · 45,449–45,535 bp · +
trnL-UAA · PQ059204.1 · 47,511–48,070 bp · +
trnF-GAA · PQ059204.1 · 48,374–48,446 bp · +
trnM-CAU · PQ059204.1 · 52,600–52,672 bp · +
rbcL · PQ059204.1 · 55,511–56,974 bp · +
accD · PQ059204.1 · 57,688–59,166 bp · +
psaI · PQ059204.1 · 59,873–59,983 bp · +
ycf4 · PQ059204.1 · 60,417–60,971 bp · +
cemA · PQ059204.1 · 61,720–62,319 bp · +
petA · PQ059204.1 · 62,526–63,488 bp · +
petL · PQ059204.1 · 66,155–66,250 bp · +
petG · PQ059204.1 · 66,426–66,539 bp · +
psaJ · PQ059204.1 · 67,183–67,380 bp · +
rpl33 · PQ059204.1 · 67,864–68,064 bp · +
rps18 · PQ059204.1 · 68,239–68,544 bp · +
rps12 · PQ059204.1 · 137,763–138,553 bp · +
psbB · PQ059204.1 · 72,595–74,121 bp · +
psbT · PQ059204.1 · 74,313–74,420 bp · +
psbH · PQ059204.1 · 74,716–74,937 bp · +
petB · PQ059204.1 · 75,062–76,432 bp · +
petD · PQ059204.1 · 76,615–77,821 bp · +
ycf2 · PQ059204.1 · 86,193–92,993 bp · +
ycf15 · PQ059204.1 · 93,084–93,332 bp · +
trnV-GAC · PQ059204.1 · 99,584–99,655 bp · +
rrn16 · PQ059204.1 · 99,882–101,372 bp · +
trnI-GAU · PQ059204.1 · 101,671–102,691 bp · +
trnA-UGC · PQ059204.1 · 102,756–103,644 bp · +
rrn23 · PQ059204.1 · 103,815–106,626 bp · +
rrn4.5 · PQ059204.1 · 106,725–106,827 bp · +
rrn5 · PQ059204.1 · 107,075–107,195 bp · +
trnR-ACG · PQ059204.1 · 107,430–107,503 bp · +
rpl32 · PQ059204.1 · 111,769–111,945 bp · +
trnL-UAG · PQ059204.1 · 112,392–112,471 bp · +
ccsA · PQ059204.1 · 112,560–113,534 bp · +
trnN-GUU · PQ059204.1 · 127,652–127,723 bp · +
rps7 · PQ059204.1 · 138,607–139,074 bp · +
ndhB · PQ059204.1 · 139,349–141,560 bp · +
trnL-CAA · PQ059204.1 · 142,103–142,183 bp · +
trnI-CAU · PQ059204.1 · 149,671–149,744 bp · +
rpl23 · PQ059204.1 · 149,904–150,185 bp · +
rpl2 · PQ059204.1 · 150,204–151,685 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria grossheimiana
ANNOTATED PLASTOME
PQ059204.1
151,785 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37946 75892 113839 151785 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 373 1431 1059 Locate
trnK-UUU gene − 1673 4254 2582 Locate
matK gene − 1963 3489 1527 Locate
rps16 gene − 5156 6314 1159 Locate
trnQ-UUG gene − 7060 7131 72 Locate
psbK gene + 7456 7641 186 Locate
psbI gene + 8032 8142 111 Locate
trnS-GCU gene − 8260 8347 88 Locate
trnG-UCC gene + 9048 9804 757 Locate
trnR-UCU gene + 9979 10050 72 Locate
atpA gene − 10147 11670 1524 Locate
atpF gene − 11752 12981 1230 Locate
atpH gene − 13342 13587 246 Locate
atpI gene − 14575 15318 744 Locate
rps2 gene − 15664 16374 711 Locate
rpoC2 gene − 16590 20795 4206 Locate
rpoC1 gene − 20950 23785 2836 Locate
rpoB gene − 23812 27024 3213 Locate
trnC-GCA gene + 28185 28255 71 Locate
petN gene + 28971 29060 90 Locate
psbM gene − 30056 30160 105 Locate
trnD-GUC gene − 30686 30759 74 Locate
trnY-GUA gene − 30873 30956 84 Locate
trnE-UUC gene − 31016 31088 73 Locate
trnT-GGU gene + 31664 31735 72 Locate
psbD gene + 33041 34102 1062 Locate
psbC gene + 34050 35471 1422 Locate
trnS-UGA gene − 35707 35798 92 Locate
psbZ gene + 36114 36302 189 Locate
trnG-GCC gene + 36580 36650 71 Locate
trnfM-CAU gene − 36796 36869 74 Locate
rps14 gene − 37024 37326 303 Locate
psaB gene − 37455 39659 2205 Locate
psaA gene − 39685 41937 2253 Locate
ycf3 gene − 42644 44566 1923 Locate
trnS-GGA gene + 45449 45535 87 Locate
rps4 gene − 45811 46416 606 Locate
trnT-UGU gene − 46758 46830 73 Locate
trnL-UAA gene + 47511 48070 560 Locate
trnF-GAA gene + 48374 48446 73 Locate
ndhJ gene − 49095 49571 477 Locate
ndhK gene − 49680 50441 762 Locate
ndhC gene − 50411 50773 363 Locate
trnV-UAC gene − 51759 52411 653 Locate
trnM-CAU gene + 52600 52672 73 Locate
atpE gene − 52866 53267 402 Locate
atpB gene − 53264 54760 1497 Locate
rbcL gene + 55511 56974 1464 Locate
accD gene + 57688 59166 1479 Locate
psaI gene + 59873 59983 111 Locate
ycf4 gene + 60417 60971 555 Locate
cemA gene + 61720 62319 600 Locate
petA gene + 62526 63488 963 Locate
psbJ gene − 64496 64618 123 Locate
psbL gene − 64752 64973 222 Locate
psbF gene − 64892 65011 120 Locate
psbE gene − 65026 65277 252 Locate
petL gene + 66155 66250 96 Locate
petG gene + 66426 66539 114 Locate
trnW-CCA gene − 66658 66731 74 Locate
trnP-UGG gene − 66901 66974 74 Locate
psaJ gene + 67183 67380 198 Locate
rpl33 gene + 67864 68064 201 Locate
rps18 gene + 68239 68544 306 Locate
rpl20 gene − 68779 69165 387 Locate
rps12 gene − 69948 70073 126 Locate
clpP gene − 70215 72143 1929 Locate
psbB gene + 72595 74121 1527 Locate
psbT gene + 74313 74420 108 Locate
psbN gene − 74481 74612 132 Locate
psbH gene + 74716 74937 222 Locate
petB gene + 75062 76432 1371 Locate
petD gene + 76615 77821 1207 Locate
rpoA gene − 78176 78976 801 Locate
rps11 gene − 79048 79464 417 Locate
rpl36 gene − 79566 79679 114 Locate
infA gene − 79774 80007 234 Locate
rps8 gene − 80131 80541 411 Locate
rpl14 gene − 80694 81062 369 Locate
rpl16 gene − 81189 82422 1234 Locate
rps3 gene − 82578 83240 663 Locate
rpl22 gene − 83242 83697 456 Locate
rps19 gene − 83757 84035 279 Locate
rpl2 gene − 84090 85571 1482 Locate
rpl23 gene − 85590 85871 282 Locate
trnI-CAU gene − 86031 86104 74 Locate
ycf2 gene + 86193 92993 6801 Locate
ycf15 gene + 93084 93332 249 Locate
trnL-CAA gene − 93592 93672 81 Locate
ndhB gene − 94215 96426 2212 Locate
rps7 gene − 96701 97168 468 Locate
rps12 gene − 97222 98012 791 Locate
trnV-GAC gene + 99584 99655 72 Locate
rrn16 gene + 99882 101372 1491 Locate
trnI-GAU gene + 101671 102691 1021 Locate
trnA-UGC gene + 102756 103644 889 Locate
rrn23 gene + 103815 106626 2812 Locate
rrn4.5 gene + 106725 106827 103 Locate
rrn5 gene + 107075 107195 121 Locate
trnR-ACG gene + 107430 107503 74 Locate
trnN-GUU gene − 108052 108123 72 Locate
ndhF gene − 109180 111441 2262 Locate
rpl32 gene + 111769 111945 177 Locate
trnL-UAG gene + 112392 112471 80 Locate
ccsA gene + 112560 113534 975 Locate
ndhD gene − 113790 115319 1530 Locate
psaC gene − 115420 115665 246 Locate
ndhE gene − 115921 116226 306 Locate
ndhG gene − 116443 116973 531 Locate
ndhI gene − 117340 117840 501 Locate
ndhA gene − 117926 120047 2122 Locate
ndhH gene − 120049 121260 1212 Locate
rps15 gene − 121327 121599 273 Locate
ycf1 gene − 121797 127433 5637 Locate
trnN-GUU gene + 127652 127723 72 Locate
trnR-ACG gene − 128272 128345 74 Locate
rrn5 gene − 128580 128700 121 Locate
rrn4.5 gene − 128948 129050 103 Locate
rrn23 gene − 129149 131960 2812 Locate
trnA-UGC gene − 132131 133019 889 Locate
trnI-GAU gene − 133084 134104 1021 Locate
ycf68 gene − 133656 133949 294 Locate
rrn16 gene − 134403 135893 1491 Locate
trnV-GAC gene − 136120 136191 72 Locate
rps12 gene + 137763 138553 791 Locate
rps7 gene + 138607 139074 468 Locate
ndhB gene + 139349 141560 2212 Locate
trnL-CAA gene + 142103 142183 81 Locate
ycf15 gene − 142443 142691 249 Locate
ycf2 gene − 142782 149582 6801 Locate
trnI-CAU gene + 149671 149744 74 Locate
rpl23 gene + 149904 150185 282 Locate
rpl2 gene + 150204 151685 1482 Locate
Status Available
Accession PQ059204.1
Length 151,785 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources