Scutellaria guatemalensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420965.1 · 3–76 bp · −
psbA · MW420965.1 · 331–1,389 bp · −
trnK-UUU · MW420965.1 · 1,634–4,220 bp · −
matK · MW420965.1 · 1,924–3,468 bp · −
rps16 · MW420965.1 · 5,143–6,314 bp · −
trnQ-UUC · MW420965.1 · 7,442–7,513 bp · −
trnS-GCU · MW420965.1 · 8,646–8,733 bp · −
atpA · MW420965.1 · 10,515–12,038 bp · −
atpF · MW420965.1 · 12,120–13,350 bp · −
atpH · MW420965.1 · 13,714–13,959 bp · −
atpI · MW420965.1 · 14,943–15,686 bp · −
rps2 · MW420965.1 · 16,016–16,726 bp · −
rpoC2 · MW420965.1 · 16,943–21,148 bp · −
rpoC1 · MW420965.1 · 21,294–24,125 bp · −
rpoB · MW420965.1 · 24,152–27,364 bp · −
psbM · MW420965.1 · 30,410–30,523 bp · −
trnD-GUC · MW420965.1 · 31,050–31,123 bp · −
trnY-GUA · MW420965.1 · 31,237–31,320 bp · −
trnE-UUC · MW420965.1 · 31,380–31,452 bp · −
trnS-UCA · MW420965.1 · 36,080–36,172 bp · −
trnfM-CAU · MW420965.1 · 37,165–37,238 bp · −
rps14 · MW420965.1 · 37,388–37,690 bp · −
psaB · MW420965.1 · 37,818–40,022 bp · −
psaA · MW420965.1 · 40,048–42,300 bp · −
ycf3 · MW420965.1 · 42,993–44,914 bp · −
rps4 · MW420965.1 · 46,152–46,757 bp · −
trnT-UGU · MW420965.1 · 47,085–47,157 bp · −
ndhJ · MW420965.1 · 49,445–49,921 bp · −
ndhK · MW420965.1 · 50,029–50,706 bp · −
ndhC · MW420965.1 · 50,759–51,121 bp · −
trnV-UAC · MW420965.1 · 52,030–52,683 bp · −
atpE · MW420965.1 · 53,146–53,547 bp · −
atpB · MW420965.1 · 53,544–55,040 bp · −
pabJ · MW420965.1 · 64,796–64,918 bp · −
psbL · MW420965.1 · 65,052–65,168 bp · −
psbF · MW420965.1 · 65,192–65,311 bp · −
psbE · MW420965.1 · 65,326–65,577 bp · −
trnW-CCA · MW420965.1 · 66,990–67,063 bp · −
trnP-UGG · MW420965.1 · 67,219–67,292 bp · −
rpl20 · MW420965.1 · 69,089–69,475 bp · −
rps12 · MW420965.1 · 70,263–70,388 bp · −
rps12 · MW420965.1 · 97,611–98,401 bp · −
clpP · MW420965.1 · 70,529–72,463 bp · −
psbN · MW420965.1 · 74,812–74,943 bp · −
rpoA · MW420965.1 · 78,327–79,340 bp · −
rps11 · MW420965.1 · 79,412–79,828 bp · −
rpl36 · MW420965.1 · 79,930–80,043 bp · −
infA · MW420965.1 · 80,139–80,372 bp · −
rps8 · MW420965.1 · 80,491–80,901 bp · −
rpl14 · MW420965.1 · 81,070–81,438 bp · −
rpl16 · MW420965.1 · 81,556–82,799 bp · −
rps3 · MW420965.1 · 82,954–83,616 bp · −
rpl22 · MW420965.1 · 83,643–84,074 bp · −
rps19 · MW420965.1 · 84,134–84,412 bp · −
rpl2 · MW420965.1 · 84,468–85,950 bp · −
rpl23 · MW420965.1 · 85,969–86,250 bp · −
trnI-CAU · MW420965.1 · 86,410–86,483 bp · −
trnL-CAA · MW420965.1 · 93,981–94,061 bp · −
ndhB · MW420965.1 · 94,604–96,815 bp · −
rps7 · MW420965.1 · 97,090–97,557 bp · −
ndhF · MW420965.1 · 109,591–111,831 bp · −
ndhD · MW420965.1 · 114,354–115,883 bp · −
psaC · MW420965.1 · 115,983–116,228 bp · −
ndhE · MW420965.1 · 116,484–116,789 bp · −
ndhG · MW420965.1 · 117,021–117,551 bp · −
ndhI · MW420965.1 · 117,903–118,403 bp · −
ndhA · MW420965.1 · 118,484–120,585 bp · −
ndhH · MW420965.1 · 120,587–121,768 bp · −
rps15 · MW420965.1 · 121,865–122,137 bp · −
ycf1 · MW420965.1 · 122,408–127,858 bp · −
trnR-ACG · MW420965.1 · 128,809–128,882 bp · −
rrn5 · MW420965.1 · 129,117–129,237 bp · −
rrn4.5 · MW420965.1 · 129,485–129,587 bp · −
rrn23 · MW420965.1 · 129,686–132,498 bp · −
trnA-UGC · MW420965.1 · 132,668–133,558 bp · −
trnI-GAU · MW420965.1 · 133,624–134,642 bp · −
rrn16 · MW420965.1 · 134,941–136,431 bp · −
trnV-GAC · MW420965.1 · 136,659–136,730 bp · −
ycf15 · MW420965.1 · 142,982–143,179 bp · −
ycf2 · MW420965.1 · 143,321–150,130 bp · −
psbK · MW420965.1 · 7,838–8,023 bp · +
psbI · MW420965.1 · 8,419–8,529 bp · +
trnG-CGA · MW420965.1 · 9,421–10,173 bp · +
trnR-UCU · MW420965.1 · 10,347–10,418 bp · +
trnC-GCA · MW420965.1 · 28,533–28,603 bp · +
petN · MW420965.1 · 29,331–29,420 bp · +
trnT-GGU · MW420965.1 · 32,028–32,099 bp · +
psbD · MW420965.1 · 33,408–34,469 bp · +
psbC · MW420965.1 · 34,417–35,838 bp · +
psbZ · MW420965.1 · 36,492–36,680 bp · +
trnG-GCC · MW420965.1 · 36,952–37,022 bp · +
trnS-GGA · MW420965.1 · 45,782–45,868 bp · +
trnL-UAA · MW420965.1 · 47,840–48,410 bp · +
trnF-GAA · MW420965.1 · 48,720–48,792 bp · +
trnM-CAU · MW420965.1 · 52,864–52,936 bp · +
rbcL · MW420965.1 · 55,814–57,253 bp · +
accD · MW420965.1 · 57,977–59,455 bp · +
psaI · MW420965.1 · 60,167–60,277 bp · +
ycf4 · MW420965.1 · 60,717–61,271 bp · +
cemA · MW420965.1 · 61,951–62,610 bp · +
petA · MW420965.1 · 62,817–63,779 bp · +
petL · MW420965.1 · 66,487–66,582 bp · +
petG · MW420965.1 · 66,758–66,871 bp · +
psbJ · MW420965.1 · 67,565–67,699 bp · +
rpl33 · MW420965.1 · 68,172–68,372 bp · +
rps18 · MW420965.1 · 68,548–68,853 bp · +
rps12 · MW420965.1 · 138,301–139,091 bp · +
psbB · MW420965.1 · 72,926–74,452 bp · +
psbT · MW420965.1 · 74,644–74,751 bp · +
psbH · MW420965.1 · 75,047–75,268 bp · +
petB · MW420965.1 · 75,394–76,764 bp · +
petD · MW420965.1 · 76,953–78,164 bp · +
ycf2 · MW420965.1 · 86,572–93,381 bp · +
ycf15 · MW420965.1 · 93,523–93,720 bp · +
trnV-GAC · MW420965.1 · 99,972–100,043 bp · +
rrn16 · MW420965.1 · 100,271–101,761 bp · +
trnI-GAU · MW420965.1 · 102,060–103,078 bp · +
trnA-UGC · MW420965.1 · 103,144–104,034 bp · +
rrn23 · MW420965.1 · 104,204–107,016 bp · +
rrn4.5 · MW420965.1 · 107,115–107,217 bp · +
rrn5 · MW420965.1 · 107,465–107,585 bp · +
trnR-ACG · MW420965.1 · 107,820–107,893 bp · +
trnN-GUU · MW420965.1 · 108,443–108,514 bp · +
rpl32 · MW420965.1 · 112,357–112,533 bp · +
trnL-UAG · MW420965.1 · 112,966–113,045 bp · +
ccsA · MW420965.1 · 113,152–114,126 bp · +
trnN-GUU · MW420965.1 · 128,188–128,259 bp · +
rps7 · MW420965.1 · 139,145–139,612 bp · +
ndhB · MW420965.1 · 139,887–142,098 bp · +
trnL-CAA · MW420965.1 · 142,641–142,721 bp · +
trnI-CAU · MW420965.1 · 150,219–150,292 bp · +
rpl23 · MW420965.1 · 150,452–150,733 bp · +
rpl2 · MW420965.1 · 150,752–152,234 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria guatemalensis
ANNOTATED PLASTOME
MW420965.1
152,330 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38082 76165 114248 152330 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 331 1389 1059 Locate
trnK-UUU gene − 1634 4220 2587 Locate
matK gene − 1924 3468 1545 Locate
rps16 gene − 5143 6314 1172 Locate
trnQ-UUC gene − 7442 7513 72 Locate
psbK gene + 7838 8023 186 Locate
psbI gene + 8419 8529 111 Locate
trnS-GCU gene − 8646 8733 88 Locate
trnG-CGA gene + 9421 10173 753 Locate
trnR-UCU gene + 10347 10418 72 Locate
atpA gene − 10515 12038 1524 Locate
atpF gene − 12120 13350 1231 Locate
atpH gene − 13714 13959 246 Locate
atpI gene − 14943 15686 744 Locate
rps2 gene − 16016 16726 711 Locate
rpoC2 gene − 16943 21148 4206 Locate
rpoC1 gene − 21294 24125 2832 Locate
rpoB gene − 24152 27364 3213 Locate
trnC-GCA gene + 28533 28603 71 Locate
petN gene + 29331 29420 90 Locate
psbM gene − 30410 30523 114 Locate
trnD-GUC gene − 31050 31123 74 Locate
trnY-GUA gene − 31237 31320 84 Locate
trnE-UUC gene − 31380 31452 73 Locate
trnT-GGU gene + 32028 32099 72 Locate
psbD gene + 33408 34469 1062 Locate
psbC gene + 34417 35838 1422 Locate
trnS-UCA gene − 36080 36172 93 Locate
psbZ gene + 36492 36680 189 Locate
trnG-GCC gene + 36952 37022 71 Locate
trnfM-CAU gene − 37165 37238 74 Locate
rps14 gene − 37388 37690 303 Locate
psaB gene − 37818 40022 2205 Locate
psaA gene − 40048 42300 2253 Locate
ycf3 gene − 42993 44914 1922 Locate
trnS-GGA gene + 45782 45868 87 Locate
rps4 gene − 46152 46757 606 Locate
trnT-UGU gene − 47085 47157 73 Locate
trnL-UAA gene + 47840 48410 571 Locate
trnF-GAA gene + 48720 48792 73 Locate
ndhJ gene − 49445 49921 477 Locate
ndhK gene − 50029 50706 678 Locate
ndhC gene − 50759 51121 363 Locate
trnV-UAC gene − 52030 52683 654 Locate
trnM-CAU gene + 52864 52936 73 Locate
atpE gene − 53146 53547 402 Locate
atpB gene − 53544 55040 1497 Locate
rbcL gene + 55814 57253 1440 Locate
accD gene + 57977 59455 1479 Locate
psaI gene + 60167 60277 111 Locate
ycf4 gene + 60717 61271 555 Locate
cemA gene + 61951 62610 660 Locate
petA gene + 62817 63779 963 Locate
pabJ gene − 64796 64918 123 Locate
psbL gene − 65052 65168 117 Locate
psbF gene − 65192 65311 120 Locate
psbE gene − 65326 65577 252 Locate
petL gene + 66487 66582 96 Locate
petG gene + 66758 66871 114 Locate
trnW-CCA gene − 66990 67063 74 Locate
trnP-UGG gene − 67219 67292 74 Locate
psbJ gene + 67565 67699 135 Locate
rpl33 gene + 68172 68372 201 Locate
rps18 gene + 68548 68853 306 Locate
rpl20 gene − 69089 69475 387 Locate
rps12 gene − 70263 70388 126 Locate
clpP gene − 70529 72463 1935 Locate
psbB gene + 72926 74452 1527 Locate
psbT gene + 74644 74751 108 Locate
psbN gene − 74812 74943 132 Locate
psbH gene + 75047 75268 222 Locate
petB gene + 75394 76764 1371 Locate
petD gene + 76953 78164 1212 Locate
rpoA gene − 78327 79340 1014 Locate
rps11 gene − 79412 79828 417 Locate
rpl36 gene − 79930 80043 114 Locate
infA gene − 80139 80372 234 Locate
rps8 gene − 80491 80901 411 Locate
rpl14 gene − 81070 81438 369 Locate
rpl16 gene − 81556 82799 1244 Locate
rps3 gene − 82954 83616 663 Locate
rpl22 gene − 83643 84074 432 Locate
rps19 gene − 84134 84412 279 Locate
rpl2 gene − 84468 85950 1483 Locate
rpl23 gene − 85969 86250 282 Locate
trnI-CAU gene − 86410 86483 74 Locate
ycf2 gene + 86572 93381 6810 Locate
ycf15 gene + 93523 93720 198 Locate
trnL-CAA gene − 93981 94061 81 Locate
ndhB gene − 94604 96815 2212 Locate
rps7 gene − 97090 97557 468 Locate
rps12 gene − 97611 98401 791 Locate
trnV-GAC gene + 99972 100043 72 Locate
rrn16 gene + 100271 101761 1491 Locate
trnI-GAU gene + 102060 103078 1019 Locate
trnA-UGC gene + 103144 104034 891 Locate
rrn23 gene + 104204 107016 2813 Locate
rrn4.5 gene + 107115 107217 103 Locate
rrn5 gene + 107465 107585 121 Locate
trnR-ACG gene + 107820 107893 74 Locate
trnN-GUU gene + 108443 108514 72 Locate
ndhF gene − 109591 111831 2241 Locate
rpl32 gene + 112357 112533 177 Locate
trnL-UAG gene + 112966 113045 80 Locate
ccsA gene + 113152 114126 975 Locate
ndhD gene − 114354 115883 1530 Locate
psaC gene − 115983 116228 246 Locate
ndhE gene − 116484 116789 306 Locate
ndhG gene − 117021 117551 531 Locate
ndhI gene − 117903 118403 501 Locate
ndhA gene − 118484 120585 2102 Locate
ndhH gene − 120587 121768 1182 Locate
rps15 gene − 121865 122137 273 Locate
ycf1 gene − 122408 127858 5451 Locate
trnN-GUU gene + 128188 128259 72 Locate
trnR-ACG gene − 128809 128882 74 Locate
rrn5 gene − 129117 129237 121 Locate
rrn4.5 gene − 129485 129587 103 Locate
rrn23 gene − 129686 132498 2813 Locate
trnA-UGC gene − 132668 133558 891 Locate
trnI-GAU gene − 133624 134642 1019 Locate
rrn16 gene − 134941 136431 1491 Locate
trnV-GAC gene − 136659 136730 72 Locate
rps12 gene + 138301 139091 791 Locate
rps7 gene + 139145 139612 468 Locate
ndhB gene + 139887 142098 2212 Locate
trnL-CAA gene + 142641 142721 81 Locate
ycf15 gene − 142982 143179 198 Locate
ycf2 gene − 143321 150130 6810 Locate
trnI-CAU gene + 150219 150292 74 Locate
rpl23 gene + 150452 150733 282 Locate
rpl2 gene + 150752 152234 1483 Locate
Status Available
Accession MW420965.1
Length 152,330 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources