Scutellaria guttata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058239.1 · 10–83 bp · −
psbA · PQ058239.1 · 381–1,439 bp · −
trnK-UUU · PQ058239.1 · 1,673–4,256 bp · −
matK · PQ058239.1 · 1,963–3,489 bp · −
rps16 · PQ058239.1 · 5,154–6,312 bp · −
trnQ-UUG · PQ058239.1 · 7,444–7,515 bp · −
trnS-GCU · PQ058239.1 · 8,644–8,731 bp · −
atpA · PQ058239.1 · 10,526–12,049 bp · −
atpF · PQ058239.1 · 12,130–13,358 bp · −
atpH · PQ058239.1 · 13,717–13,962 bp · −
atpI · PQ058239.1 · 14,950–15,693 bp · −
rps2 · PQ058239.1 · 16,039–16,749 bp · −
rpoC2 · PQ058239.1 · 16,966–21,177 bp · −
rpoC1 · PQ058239.1 · 21,332–24,159 bp · −
rpoB · PQ058239.1 · 24,186–27,398 bp · −
psbM · PQ058239.1 · 30,521–30,625 bp · −
trnD-GUC · PQ058239.1 · 31,151–31,224 bp · −
trnY-GUA · PQ058239.1 · 31,338–31,421 bp · −
trnE-UUC · PQ058239.1 · 31,481–31,553 bp · −
trnS-UGA · PQ058239.1 · 36,171–36,262 bp · −
trnfM-CAU · PQ058239.1 · 37,261–37,334 bp · −
rps14 · PQ058239.1 · 37,489–37,791 bp · −
psaB · PQ058239.1 · 37,920–40,124 bp · −
psaA · PQ058239.1 · 40,150–42,402 bp · −
ycf3 · PQ058239.1 · 43,100–45,021 bp · −
rps4 · PQ058239.1 · 46,266–46,871 bp · −
trnT-UGU · PQ058239.1 · 47,211–47,283 bp · −
ndhJ · PQ058239.1 · 49,538–50,014 bp · −
ndhK · PQ058239.1 · 50,123–50,800 bp · −
ndhC · PQ058239.1 · 50,854–51,216 bp · −
trnV-UAC · PQ058239.1 · 52,202–52,854 bp · −
atpE · PQ058239.1 · 53,309–53,710 bp · −
atpB · PQ058239.1 · 53,707–55,203 bp · −
psbJ · PQ058239.1 · 64,942–65,064 bp · −
psbL · PQ058239.1 · 65,198–65,419 bp · −
psbF · PQ058239.1 · 65,338–65,457 bp · −
psbE · PQ058239.1 · 65,472–65,723 bp · −
trnW-CCA · PQ058239.1 · 67,101–67,174 bp · −
trnP-UGG · PQ058239.1 · 67,345–67,418 bp · −
rpl20 · PQ058239.1 · 69,216–69,602 bp · −
rps12 · PQ058239.1 · 70,385–70,510 bp · −
rps12 · PQ058239.1 · 97,676–98,466 bp · −
clpP · PQ058239.1 · 70,652–72,581 bp · −
psbN · PQ058239.1 · 74,925–75,056 bp · −
rpoA · PQ058239.1 · 78,622–79,422 bp · −
rps11 · PQ058239.1 · 79,494–79,910 bp · −
rpl36 · PQ058239.1 · 80,012–80,125 bp · −
infA · PQ058239.1 · 80,220–80,453 bp · −
rps8 · PQ058239.1 · 80,576–80,986 bp · −
rpl14 · PQ058239.1 · 81,139–81,507 bp · −
rpl16 · PQ058239.1 · 81,634–82,867 bp · −
rps3 · PQ058239.1 · 83,023–83,685 bp · −
rpl22 · PQ058239.1 · 83,687–84,142 bp · −
rps19 · PQ058239.1 · 84,202–84,480 bp · −
rpl2 · PQ058239.1 · 84,535–86,016 bp · −
rpl23 · PQ058239.1 · 86,035–86,316 bp · −
trnI-CAU · PQ058239.1 · 86,476–86,549 bp · −
trnL-CAA · PQ058239.1 · 94,046–94,126 bp · −
ndhB · PQ058239.1 · 94,669–96,880 bp · −
rps7 · PQ058239.1 · 97,155–97,622 bp · −
trnN-GUU · PQ058239.1 · 108,503–108,574 bp · −
ndhF · PQ058239.1 · 109,631–111,892 bp · −
ndhD · PQ058239.1 · 114,254–115,756 bp · −
psaC · PQ058239.1 · 115,885–116,130 bp · −
ndhE · PQ058239.1 · 116,386–116,691 bp · −
ndhG · PQ058239.1 · 116,908–117,438 bp · −
ndhI · PQ058239.1 · 117,805–118,305 bp · −
ndhA · PQ058239.1 · 118,386–120,507 bp · −
ndhH · PQ058239.1 · 120,509–121,690 bp · −
rps15 · PQ058239.1 · 121,787–122,059 bp · −
ycf1 · PQ058239.1 · 122,253–127,880 bp · −
trnR-ACG · PQ058239.1 · 128,718–128,791 bp · −
rrn5 · PQ058239.1 · 129,026–129,146 bp · −
rrn4.5 · PQ058239.1 · 129,394–129,496 bp · −
rrn23 · PQ058239.1 · 129,595–132,406 bp · −
trnA-UGC · PQ058239.1 · 132,576–133,464 bp · −
trnI-GAU · PQ058239.1 · 133,529–134,548 bp · −
ycf68 · PQ058239.1 · 134,100–134,393 bp · −
rrn16 · PQ058239.1 · 134,847–136,337 bp · −
trnV-GAC · PQ058239.1 · 136,564–136,635 bp · −
ycf15 · PQ058239.1 · 142,887–143,084 bp · −
ycf2 · PQ058239.1 · 143,226–150,035 bp · −
psbK · PQ058239.1 · 7,840–8,025 bp · +
psbI · PQ058239.1 · 8,415–8,525 bp · +
trnG-UCC · PQ058239.1 · 9,427–10,183 bp · +
trnR-UCU · PQ058239.1 · 10,358–10,429 bp · +
trnC-GCA · PQ058239.1 · 28,559–28,629 bp · +
petN · PQ058239.1 · 29,340–29,429 bp · +
trnT-GGU · PQ058239.1 · 32,129–32,200 bp · +
psbD · PQ058239.1 · 33,504–34,565 bp · +
psbC · PQ058239.1 · 34,513–35,934 bp · +
psbZ · PQ058239.1 · 36,578–36,766 bp · +
trnG-GCC · PQ058239.1 · 37,043–37,113 bp · +
trnS-GGA · PQ058239.1 · 45,904–45,990 bp · +
trnL-UAA · PQ058239.1 · 47,961–48,520 bp · +
trnF-GAA · PQ058239.1 · 48,825–48,897 bp · +
trnM-CAU · PQ058239.1 · 53,043–53,115 bp · +
rbcL · PQ058239.1 · 55,955–57,418 bp · +
accD · PQ058239.1 · 58,144–59,622 bp · +
psaI · PQ058239.1 · 60,329–60,439 bp · +
ycf4 · PQ058239.1 · 60,865–61,419 bp · +
cemA · PQ058239.1 · 62,168–62,767 bp · +
petA · PQ058239.1 · 62,974–63,936 bp · +
petL · PQ058239.1 · 66,598–66,693 bp · +
petG · PQ058239.1 · 66,869–66,982 bp · +
psaJ · PQ058239.1 · 67,689–67,823 bp · +
rpl33 · PQ058239.1 · 68,301–68,501 bp · +
rps18 · PQ058239.1 · 68,676–68,981 bp · +
rps12 · PQ058239.1 · 138,207–138,997 bp · +
psbB · PQ058239.1 · 73,040–74,566 bp · +
psbT · PQ058239.1 · 74,757–74,864 bp · +
psbH · PQ058239.1 · 75,160–75,381 bp · +
petB · PQ058239.1 · 75,506–76,879 bp · +
petD · PQ058239.1 · 77,062–78,267 bp · +
ycf2 · PQ058239.1 · 86,638–93,447 bp · +
ycf15 · PQ058239.1 · 93,589–93,786 bp · +
trnV-GAC · PQ058239.1 · 100,038–100,109 bp · +
rrn16 · PQ058239.1 · 100,336–101,826 bp · +
trnI-GAU · PQ058239.1 · 102,125–103,144 bp · +
rrn23 · PQ058239.1 · 104,267–107,078 bp · +
rrn4.5 · PQ058239.1 · 107,177–107,279 bp · +
rrn5 · PQ058239.1 · 107,527–107,647 bp · +
trnR-ACG · PQ058239.1 · 107,882–107,955 bp · +
rpl32 · PQ058239.1 · 112,220–112,396 bp · +
trnL-UAG · PQ058239.1 · 112,843–112,922 bp · +
ccsA · PQ058239.1 · 113,023–113,997 bp · +
trnN-GUU · PQ058239.1 · 128,099–128,170 bp · +
rps7 · PQ058239.1 · 139,051–139,518 bp · +
ndhB · PQ058239.1 · 139,793–142,004 bp · +
trnL-CAA · PQ058239.1 · 142,547–142,627 bp · +
trnI-CAU · PQ058239.1 · 150,124–150,197 bp · +
rpl23 · PQ058239.1 · 150,357–150,638 bp · +
rpl2 · PQ058239.1 · 150,657–152,138 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria guttata
ANNOTATED PLASTOME
PQ058239.1
152,238 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38060 76119 114178 152238 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1673 4256 2584 Locate
matK gene − 1963 3489 1527 Locate
rps16 gene − 5154 6312 1159 Locate
trnQ-UUG gene − 7444 7515 72 Locate
psbK gene + 7840 8025 186 Locate
psbI gene + 8415 8525 111 Locate
trnS-GCU gene − 8644 8731 88 Locate
trnG-UCC gene + 9427 10183 757 Locate
trnR-UCU gene + 10358 10429 72 Locate
atpA gene − 10526 12049 1524 Locate
atpF gene − 12130 13358 1229 Locate
atpH gene − 13717 13962 246 Locate
atpI gene − 14950 15693 744 Locate
rps2 gene − 16039 16749 711 Locate
rpoC2 gene − 16966 21177 4212 Locate
rpoC1 gene − 21332 24159 2828 Locate
rpoB gene − 24186 27398 3213 Locate
trnC-GCA gene + 28559 28629 71 Locate
petN gene + 29340 29429 90 Locate
psbM gene − 30521 30625 105 Locate
trnD-GUC gene − 31151 31224 74 Locate
trnY-GUA gene − 31338 31421 84 Locate
trnE-UUC gene − 31481 31553 73 Locate
trnT-GGU gene + 32129 32200 72 Locate
psbD gene + 33504 34565 1062 Locate
psbC gene + 34513 35934 1422 Locate
trnS-UGA gene − 36171 36262 92 Locate
psbZ gene + 36578 36766 189 Locate
trnG-GCC gene + 37043 37113 71 Locate
trnfM-CAU gene − 37261 37334 74 Locate
rps14 gene − 37489 37791 303 Locate
psaB gene − 37920 40124 2205 Locate
psaA gene − 40150 42402 2253 Locate
ycf3 gene − 43100 45021 1922 Locate
trnS-GGA gene + 45904 45990 87 Locate
rps4 gene − 46266 46871 606 Locate
trnT-UGU gene − 47211 47283 73 Locate
trnL-UAA gene + 47961 48520 560 Locate
trnF-GAA gene + 48825 48897 73 Locate
ndhJ gene − 49538 50014 477 Locate
ndhK gene − 50123 50800 678 Locate
ndhC gene − 50854 51216 363 Locate
trnV-UAC gene − 52202 52854 653 Locate
trnM-CAU gene + 53043 53115 73 Locate
atpE gene − 53309 53710 402 Locate
atpB gene − 53707 55203 1497 Locate
rbcL gene + 55955 57418 1464 Locate
accD gene + 58144 59622 1479 Locate
psaI gene + 60329 60439 111 Locate
ycf4 gene + 60865 61419 555 Locate
cemA gene + 62168 62767 600 Locate
petA gene + 62974 63936 963 Locate
psbJ gene − 64942 65064 123 Locate
psbL gene − 65198 65419 222 Locate
psbF gene − 65338 65457 120 Locate
psbE gene − 65472 65723 252 Locate
petL gene + 66598 66693 96 Locate
petG gene + 66869 66982 114 Locate
trnW-CCA gene − 67101 67174 74 Locate
trnP-UGG gene − 67345 67418 74 Locate
psaJ gene + 67689 67823 135 Locate
rpl33 gene + 68301 68501 201 Locate
rps18 gene + 68676 68981 306 Locate
rpl20 gene − 69216 69602 387 Locate
rps12 gene − 70385 70510 126 Locate
clpP gene − 70652 72581 1930 Locate
psbB gene + 73040 74566 1527 Locate
psbT gene + 74757 74864 108 Locate
psbN gene − 74925 75056 132 Locate
psbH gene + 75160 75381 222 Locate
petB gene + 75506 76879 1374 Locate
petD gene + 77062 78267 1206 Locate
rpoA gene − 78622 79422 801 Locate
rps11 gene − 79494 79910 417 Locate
rpl36 gene − 80012 80125 114 Locate
infA gene − 80220 80453 234 Locate
rps8 gene − 80576 80986 411 Locate
rpl14 gene − 81139 81507 369 Locate
rpl16 gene − 81634 82867 1234 Locate
rps3 gene − 83023 83685 663 Locate
rpl22 gene − 83687 84142 456 Locate
rps19 gene − 84202 84480 279 Locate
rpl2 gene − 84535 86016 1482 Locate
rpl23 gene − 86035 86316 282 Locate
trnI-CAU gene − 86476 86549 74 Locate
ycf2 gene + 86638 93447 6810 Locate
ycf15 gene + 93589 93786 198 Locate
trnL-CAA gene − 94046 94126 81 Locate
ndhB gene − 94669 96880 2212 Locate
rps7 gene − 97155 97622 468 Locate
rps12 gene − 97676 98466 791 Locate
trnV-GAC gene + 100038 100109 72 Locate
rrn16 gene + 100336 101826 1491 Locate
trnI-GAU gene + 102125 103144 1020 Locate
rrn23 gene + 104267 107078 2812 Locate
rrn4.5 gene + 107177 107279 103 Locate
rrn5 gene + 107527 107647 121 Locate
trnR-ACG gene + 107882 107955 74 Locate
trnN-GUU gene − 108503 108574 72 Locate
ndhF gene − 109631 111892 2262 Locate
rpl32 gene + 112220 112396 177 Locate
trnL-UAG gene + 112843 112922 80 Locate
ccsA gene + 113023 113997 975 Locate
ndhD gene − 114254 115756 1503 Locate
psaC gene − 115885 116130 246 Locate
ndhE gene − 116386 116691 306 Locate
ndhG gene − 116908 117438 531 Locate
ndhI gene − 117805 118305 501 Locate
ndhA gene − 118386 120507 2122 Locate
ndhH gene − 120509 121690 1182 Locate
rps15 gene − 121787 122059 273 Locate
ycf1 gene − 122253 127880 5628 Locate
trnN-GUU gene + 128099 128170 72 Locate
trnR-ACG gene − 128718 128791 74 Locate
rrn5 gene − 129026 129146 121 Locate
rrn4.5 gene − 129394 129496 103 Locate
rrn23 gene − 129595 132406 2812 Locate
trnA-UGC gene − 132576 133464 889 Locate
trnI-GAU gene − 133529 134548 1020 Locate
ycf68 gene − 134100 134393 294 Locate
rrn16 gene − 134847 136337 1491 Locate
trnV-GAC gene − 136564 136635 72 Locate
rps12 gene + 138207 138997 791 Locate
rps7 gene + 139051 139518 468 Locate
ndhB gene + 139793 142004 2212 Locate
trnL-CAA gene + 142547 142627 81 Locate
ycf15 gene − 142887 143084 198 Locate
ycf2 gene − 143226 150035 6810 Locate
trnI-CAU gene + 150124 150197 74 Locate
rpl23 gene + 150357 150638 282 Locate
rpl2 gene + 150657 152138 1482 Locate
Status Available
Accession PQ058239.1
Length 152,238 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources