Scutellaria hainanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075885.1 · 3–76 bp · −
psbA · PQ075885.1 · 365–1,423 bp · −
trnK-UUU · PQ075885.1 · 1,665–4,253 bp · −
matK · PQ075885.1 · 1,960–3,495 bp · −
rps16 · PQ075885.1 · 5,136–6,303 bp · −
trnQ-UUG · PQ075885.1 · 7,323–7,394 bp · −
trnS-GCU · PQ075885.1 · 8,527–8,614 bp · −
atpA · PQ075885.1 · 10,410–11,933 bp · −
atpF · PQ075885.1 · 12,016–13,243 bp · −
atpH · PQ075885.1 · 13,599–13,844 bp · −
atpI · PQ075885.1 · 14,840–15,583 bp · −
rps2 · PQ075885.1 · 15,932–16,642 bp · −
rpoC2 · PQ075885.1 · 16,866–21,071 bp · −
rpoC1 · PQ075885.1 · 21,226–24,050 bp · −
rpoB · PQ075885.1 · 24,077–27,289 bp · −
psbM · PQ075885.1 · 30,356–30,460 bp · −
trnD-GUC · PQ075885.1 · 30,987–31,060 bp · −
trnY-GUA · PQ075885.1 · 31,174–31,257 bp · −
trnE-UUC · PQ075885.1 · 31,317–31,389 bp · −
trnS-UGA · PQ075885.1 · 36,001–36,092 bp · −
trnfM-CAU · PQ075885.1 · 37,096–37,169 bp · −
rps14 · PQ075885.1 · 37,319–37,621 bp · −
psaB · PQ075885.1 · 37,749–39,953 bp · −
psaA · PQ075885.1 · 39,979–42,231 bp · −
ycf3 · PQ075885.1 · 42,903–44,825 bp · −
rps4 · PQ075885.1 · 46,082–46,687 bp · −
trnT-UGU · PQ075885.1 · 47,027–47,099 bp · −
ndhJ · PQ075885.1 · 49,383–49,859 bp · −
ndhK · PQ075885.1 · 50,003–50,644 bp · −
ndhC · PQ075885.1 · 50,697–51,059 bp · −
trnV-UAC · PQ075885.1 · 51,915–52,567 bp · −
atpE · PQ075885.1 · 53,036–53,437 bp · −
atpB · PQ075885.1 · 53,434–54,921 bp · −
psbJ · PQ075885.1 · 64,561–64,683 bp · −
psbL · PQ075885.1 · 64,817–65,038 bp · −
psbF · PQ075885.1 · 64,957–65,076 bp · −
psbE · PQ075885.1 · 65,091–65,342 bp · −
trnW-CCA · PQ075885.1 · 66,754–66,827 bp · −
trnP-UGG · PQ075885.1 · 66,997–67,070 bp · −
rpl20 · PQ075885.1 · 68,869–69,255 bp · −
rps12 · PQ075885.1 · 70,042–70,167 bp · −
rps12 · PQ075885.1 · 97,377–98,167 bp · −
clpP · PQ075885.1 · 70,310–72,241 bp · −
psbN · PQ075885.1 · 74,601–74,732 bp · −
rpoA · PQ075885.1 · 78,313–79,113 bp · −
rps11 · PQ075885.1 · 79,185–79,601 bp · −
rpl36 · PQ075885.1 · 79,703–79,816 bp · −
infA · PQ075885.1 · 79,912–80,145 bp · −
rps8 · PQ075885.1 · 80,265–80,675 bp · −
rpl14 · PQ075885.1 · 80,844–81,212 bp · −
rpl16 · PQ075885.1 · 81,339–82,572 bp · −
rps3 · PQ075885.1 · 82,727–83,389 bp · −
rpl22 · PQ075885.1 · 83,391–83,846 bp · −
rps19 · PQ075885.1 · 83,906–84,184 bp · −
rpl2 · PQ075885.1 · 84,239–85,721 bp · −
rpl23 · PQ075885.1 · 85,740–86,021 bp · −
trnI-CAU · PQ075885.1 · 86,181–86,254 bp · −
trnL-CAA · PQ075885.1 · 93,747–93,827 bp · −
ndhB · PQ075885.1 · 94,370–96,581 bp · −
rps7 · PQ075885.1 · 96,856–97,323 bp · −
trnN-GUU · PQ075885.1 · 108,214–108,285 bp · −
ndhF · PQ075885.1 · 109,362–111,602 bp · −
ndhD · PQ075885.1 · 114,126–115,628 bp · −
psaC · PQ075885.1 · 115,747–115,992 bp · −
ndhE · PQ075885.1 · 116,249–116,554 bp · −
ndhG · PQ075885.1 · 116,785–117,315 bp · −
ndhI · PQ075885.1 · 117,680–118,180 bp · −
ndhA · PQ075885.1 · 118,261–120,359 bp · −
ndhH · PQ075885.1 · 120,361–121,572 bp · −
rps15 · PQ075885.1 · 121,645–121,917 bp · −
ycf1 · PQ075885.1 · 122,184–127,829 bp · −
trnR-ACG · PQ075885.1 · 128,666–128,739 bp · −
rrn5 · PQ075885.1 · 128,974–129,094 bp · −
rrn4.5 · PQ075885.1 · 129,342–129,444 bp · −
rrn23 · PQ075885.1 · 129,543–132,355 bp · −
trnA-UGC · PQ075885.1 · 132,534–133,415 bp · −
trnI-GAU · PQ075885.1 · 133,480–134,500 bp · −
ycf68 · PQ075885.1 · 134,106–134,345 bp · −
rrn16 · PQ075885.1 · 134,799–136,289 bp · −
trnV-GAC · PQ075885.1 · 136,517–136,588 bp · −
ycf15 · PQ075885.1 · 142,842–143,039 bp · −
ycf2 · PQ075885.1 · 143,181–149,990 bp · −
psbK · PQ075885.1 · 7,719–7,904 bp · +
psbI · PQ075885.1 · 8,299–8,409 bp · +
trnG-UCC · PQ075885.1 · 9,316–10,089 bp · +
trnR-UCU · PQ075885.1 · 10,242–10,313 bp · +
trnC-GCA · PQ075885.1 · 28,459–28,529 bp · +
petN · PQ075885.1 · 29,233–29,322 bp · +
trnT-GGU · PQ075885.1 · 31,966–32,037 bp · +
psbD · PQ075885.1 · 33,334–34,395 bp · +
psbC · PQ075885.1 · 34,343–35,764 bp · +
psbZ · PQ075885.1 · 36,412–36,600 bp · +
trnG-GCC · PQ075885.1 · 36,872–36,942 bp · +
trnS-GGA · PQ075885.1 · 45,710–45,796 bp · +
trnL-UAA · PQ075885.1 · 47,788–48,350 bp · +
trnF-GAA · PQ075885.1 · 48,658–48,730 bp · +
trnM-CAU · PQ075885.1 · 52,748–52,820 bp · +
rbcL · PQ075885.1 · 55,671–57,134 bp · +
accD · PQ075885.1 · 57,873–59,348 bp · +
psaI · PQ075885.1 · 59,922–60,032 bp · +
ycf4 · PQ075885.1 · 60,466–61,020 bp · +
cemA · PQ075885.1 · 61,758–62,357 bp · +
petA · PQ075885.1 · 62,564–63,526 bp · +
petL · PQ075885.1 · 66,251–66,346 bp · +
petG · PQ075885.1 · 66,522–66,635 bp · +
psaJ · PQ075885.1 · 67,343–67,477 bp · +
rpl33 · PQ075885.1 · 67,951–68,151 bp · +
rps18 · PQ075885.1 · 68,326–68,631 bp · +
rps12 · PQ075885.1 · 138,166–138,956 bp · +
psbB · PQ075885.1 · 72,708–74,234 bp · +
psbT · PQ075885.1 · 74,426–74,527 bp · +
psbH · PQ075885.1 · 74,836–75,057 bp · +
petB · PQ075885.1 · 75,182–76,548 bp · +
petD · PQ075885.1 · 76,737–77,938 bp · +
ycf2 · PQ075885.1 · 86,343–93,152 bp · +
ycf15 · PQ075885.1 · 93,294–93,491 bp · +
trnV-GAC · PQ075885.1 · 99,745–99,816 bp · +
rrn16 · PQ075885.1 · 100,044–101,534 bp · +
trnI-GAU · PQ075885.1 · 101,833–102,853 bp · +
trnA-UGC · PQ075885.1 · 102,918–103,799 bp · +
rrn23 · PQ075885.1 · 103,978–106,790 bp · +
rrn4.5 · PQ075885.1 · 106,889–106,991 bp · +
rrn5 · PQ075885.1 · 107,239–107,359 bp · +
trnR-ACG · PQ075885.1 · 107,594–107,667 bp · +
rpl32 · PQ075885.1 · 112,123–112,299 bp · +
trnL-UAG · PQ075885.1 · 112,743–112,822 bp · +
ccsA · PQ075885.1 · 112,919–113,893 bp · +
trnN-GUU · PQ075885.1 · 128,048–128,119 bp · +
rps7 · PQ075885.1 · 139,010–139,477 bp · +
ndhB · PQ075885.1 · 139,752–141,963 bp · +
trnL-CAA · PQ075885.1 · 142,506–142,586 bp · +
trnI-CAU · PQ075885.1 · 150,079–150,152 bp · +
rpl23 · PQ075885.1 · 150,312–150,593 bp · +
rpl2 · PQ075885.1 · 150,612–152,094 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria hainanensis
ANNOTATED PLASTOME
PQ075885.1
152,189 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38047 76094 114142 152189 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5136 6303 1168 Locate
trnQ-UUG gene − 7323 7394 72 Locate
psbK gene + 7719 7904 186 Locate
psbI gene + 8299 8409 111 Locate
trnS-GCU gene − 8527 8614 88 Locate
trnG-UCC gene + 9316 10089 774 Locate
trnR-UCU gene + 10242 10313 72 Locate
atpA gene − 10410 11933 1524 Locate
atpF gene − 12016 13243 1228 Locate
atpH gene − 13599 13844 246 Locate
atpI gene − 14840 15583 744 Locate
rps2 gene − 15932 16642 711 Locate
rpoC2 gene − 16866 21071 4206 Locate
rpoC1 gene − 21226 24050 2825 Locate
rpoB gene − 24077 27289 3213 Locate
trnC-GCA gene + 28459 28529 71 Locate
petN gene + 29233 29322 90 Locate
psbM gene − 30356 30460 105 Locate
trnD-GUC gene − 30987 31060 74 Locate
trnY-GUA gene − 31174 31257 84 Locate
trnE-UUC gene − 31317 31389 73 Locate
trnT-GGU gene + 31966 32037 72 Locate
psbD gene + 33334 34395 1062 Locate
psbC gene + 34343 35764 1422 Locate
trnS-UGA gene − 36001 36092 92 Locate
psbZ gene + 36412 36600 189 Locate
trnG-GCC gene + 36872 36942 71 Locate
trnfM-CAU gene − 37096 37169 74 Locate
rps14 gene − 37319 37621 303 Locate
psaB gene − 37749 39953 2205 Locate
psaA gene − 39979 42231 2253 Locate
ycf3 gene − 42903 44825 1923 Locate
trnS-GGA gene + 45710 45796 87 Locate
rps4 gene − 46082 46687 606 Locate
trnT-UGU gene − 47027 47099 73 Locate
trnL-UAA gene + 47788 48350 563 Locate
trnF-GAA gene + 48658 48730 73 Locate
ndhJ gene − 49383 49859 477 Locate
ndhK gene − 50003 50644 642 Locate
ndhC gene − 50697 51059 363 Locate
trnV-UAC gene − 51915 52567 653 Locate
trnM-CAU gene + 52748 52820 73 Locate
atpE gene − 53036 53437 402 Locate
atpB gene − 53434 54921 1488 Locate
rbcL gene + 55671 57134 1464 Locate
accD gene + 57873 59348 1476 Locate
psaI gene + 59922 60032 111 Locate
ycf4 gene + 60466 61020 555 Locate
cemA gene + 61758 62357 600 Locate
petA gene + 62564 63526 963 Locate
psbJ gene − 64561 64683 123 Locate
psbL gene − 64817 65038 222 Locate
psbF gene − 64957 65076 120 Locate
psbE gene − 65091 65342 252 Locate
petL gene + 66251 66346 96 Locate
petG gene + 66522 66635 114 Locate
trnW-CCA gene − 66754 66827 74 Locate
trnP-UGG gene − 66997 67070 74 Locate
psaJ gene + 67343 67477 135 Locate
rpl33 gene + 67951 68151 201 Locate
rps18 gene + 68326 68631 306 Locate
rpl20 gene − 68869 69255 387 Locate
rps12 gene − 70042 70167 126 Locate
clpP gene − 70310 72241 1932 Locate
psbB gene + 72708 74234 1527 Locate
psbT gene + 74426 74527 102 Locate
psbN gene − 74601 74732 132 Locate
psbH gene + 74836 75057 222 Locate
petB gene + 75182 76548 1367 Locate
petD gene + 76737 77938 1202 Locate
rpoA gene − 78313 79113 801 Locate
rps11 gene − 79185 79601 417 Locate
rpl36 gene − 79703 79816 114 Locate
infA gene − 79912 80145 234 Locate
rps8 gene − 80265 80675 411 Locate
rpl14 gene − 80844 81212 369 Locate
rpl16 gene − 81339 82572 1234 Locate
rps3 gene − 82727 83389 663 Locate
rpl22 gene − 83391 83846 456 Locate
rps19 gene − 83906 84184 279 Locate
rpl2 gene − 84239 85721 1483 Locate
rpl23 gene − 85740 86021 282 Locate
trnI-CAU gene − 86181 86254 74 Locate
ycf2 gene + 86343 93152 6810 Locate
ycf15 gene + 93294 93491 198 Locate
trnL-CAA gene − 93747 93827 81 Locate
ndhB gene − 94370 96581 2212 Locate
rps7 gene − 96856 97323 468 Locate
rps12 gene − 97377 98167 791 Locate
trnV-GAC gene + 99745 99816 72 Locate
rrn16 gene + 100044 101534 1491 Locate
trnI-GAU gene + 101833 102853 1021 Locate
trnA-UGC gene + 102918 103799 882 Locate
rrn23 gene + 103978 106790 2813 Locate
rrn4.5 gene + 106889 106991 103 Locate
rrn5 gene + 107239 107359 121 Locate
trnR-ACG gene + 107594 107667 74 Locate
trnN-GUU gene − 108214 108285 72 Locate
ndhF gene − 109362 111602 2241 Locate
rpl32 gene + 112123 112299 177 Locate
trnL-UAG gene + 112743 112822 80 Locate
ccsA gene + 112919 113893 975 Locate
ndhD gene − 114126 115628 1503 Locate
psaC gene − 115747 115992 246 Locate
ndhE gene − 116249 116554 306 Locate
ndhG gene − 116785 117315 531 Locate
ndhI gene − 117680 118180 501 Locate
ndhA gene − 118261 120359 2099 Locate
ndhH gene − 120361 121572 1212 Locate
rps15 gene − 121645 121917 273 Locate
ycf1 gene − 122184 127829 5646 Locate
trnN-GUU gene + 128048 128119 72 Locate
trnR-ACG gene − 128666 128739 74 Locate
rrn5 gene − 128974 129094 121 Locate
rrn4.5 gene − 129342 129444 103 Locate
rrn23 gene − 129543 132355 2813 Locate
trnA-UGC gene − 132534 133415 882 Locate
trnI-GAU gene − 133480 134500 1021 Locate
ycf68 gene − 134106 134345 240 Locate
rrn16 gene − 134799 136289 1491 Locate
trnV-GAC gene − 136517 136588 72 Locate
rps12 gene + 138166 138956 791 Locate
rps7 gene + 139010 139477 468 Locate
ndhB gene + 139752 141963 2212 Locate
trnL-CAA gene + 142506 142586 81 Locate
ycf15 gene − 142842 143039 198 Locate
ycf2 gene − 143181 149990 6810 Locate
trnI-CAU gene + 150079 150152 74 Locate
rpl23 gene + 150312 150593 282 Locate
rpl2 gene + 150612 152094 1483 Locate
Status Available
Accession PQ075885.1
Length 152,189 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources