Scutellaria hastifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420934.1 · 3–76 bp · −
psbA · MW420934.1 · 380–1,438 bp · −
trnK-UUU · MW420934.1 · 1,675–4,267 bp · −
matK · MW420934.1 · 1,966–3,501 bp · −
rps16 · MW420934.1 · 5,177–6,344 bp · −
trnQ-UUC · MW420934.1 · 7,385–7,456 bp · −
trnS-GCU · MW420934.1 · 8,586–8,673 bp · −
atpA · MW420934.1 · 10,335–11,858 bp · −
atpF · MW420934.1 · 11,932–13,159 bp · −
atpH · MW420934.1 · 13,525–13,770 bp · −
atpI · MW420934.1 · 14,767–15,510 bp · −
rps2 · MW420934.1 · 15,859–16,569 bp · −
rpoC2 · MW420934.1 · 16,786–20,991 bp · −
rpoC1 · MW420934.1 · 21,146–23,981 bp · −
rpoB · MW420934.1 · 24,008–27,220 bp · −
psbM · MW420934.1 · 30,246–30,350 bp · −
trnD-GUC · MW420934.1 · 30,876–30,949 bp · −
trnY-GUA · MW420934.1 · 31,063–31,146 bp · −
trnE-UUC · MW420934.1 · 31,206–31,278 bp · −
trnS-UCA · MW420934.1 · 35,916–36,008 bp · −
trnfM-CAU · MW420934.1 · 37,008–37,081 bp · −
rps14 · MW420934.1 · 37,231–37,533 bp · −
psaB · MW420934.1 · 37,661–39,865 bp · −
psaA · MW420934.1 · 39,891–42,143 bp · −
ycf3 · MW420934.1 · 42,819–44,740 bp · −
rps4 · MW420934.1 · 45,998–46,603 bp · −
trnT-UGU · MW420934.1 · 46,944–47,016 bp · −
ndhJ · MW420934.1 · 49,299–49,775 bp · −
ndhK · MW420934.1 · 49,883–50,560 bp · −
ndhC · MW420934.1 · 50,613–50,975 bp · −
trnV-UAC · MW420934.1 · 51,955–52,607 bp · −
atpE · MW420934.1 · 53,070–53,471 bp · −
atpB · MW420934.1 · 53,468–54,955 bp · −
pabJ · MW420934.1 · 64,698–64,820 bp · −
psbL · MW420934.1 · 64,954–65,070 bp · −
psbF · MW420934.1 · 65,094–65,213 bp · −
psbE · MW420934.1 · 65,228–65,479 bp · −
trnW-CCA · MW420934.1 · 66,889–66,962 bp · −
trnP-UGG · MW420934.1 · 67,132–67,205 bp · −
rpl20 · MW420934.1 · 69,001–69,387 bp · −
rps12 · MW420934.1 · 70,169–70,294 bp · −
rps12 · MW420934.1 · 97,517–98,307 bp · −
clpP · MW420934.1 · 70,437–72,371 bp · −
psbN · MW420934.1 · 74,739–74,870 bp · −
rpoA · MW420934.1 · 78,240–79,253 bp · −
rps11 · MW420934.1 · 79,325–79,741 bp · −
rpl36 · MW420934.1 · 79,843–79,956 bp · −
infA · MW420934.1 · 80,052–80,285 bp · −
rps8 · MW420934.1 · 80,405–80,815 bp · −
rpl14 · MW420934.1 · 80,974–81,342 bp · −
rpl16 · MW420934.1 · 81,469–82,712 bp · −
rps3 · MW420934.1 · 82,867–83,529 bp · −
rpl22 · MW420934.1 · 83,531–83,986 bp · −
rps19 · MW420934.1 · 84,046–84,324 bp · −
rpl2 · MW420934.1 · 84,379–85,861 bp · −
rpl23 · MW420934.1 · 85,880–86,161 bp · −
trnI-CAU · MW420934.1 · 86,321–86,394 bp · −
trnL-CAA · MW420934.1 · 93,887–93,967 bp · −
ndhB · MW420934.1 · 94,510–96,721 bp · −
rps7 · MW420934.1 · 96,996–97,463 bp · −
ndhF · MW420934.1 · 109,498–111,738 bp · −
ndhD · MW420934.1 · 114,260–115,807 bp · −
psaC · MW420934.1 · 115,882–116,127 bp · −
ndhE · MW420934.1 · 116,384–116,689 bp · −
ndhG · MW420934.1 · 116,920–117,450 bp · −
ndhI · MW420934.1 · 117,815–118,315 bp · −
ndhA · MW420934.1 · 118,396–120,495 bp · −
ndhH · MW420934.1 · 120,497–121,678 bp · −
rps15 · MW420934.1 · 121,781–122,053 bp · −
ycf1 · MW420934.1 · 122,323–127,866 bp · −
trnR-ACG · MW420934.1 · 128,814–128,887 bp · −
rrn5 · MW420934.1 · 129,122–129,242 bp · −
rrn4.5 · MW420934.1 · 129,490–129,592 bp · −
rrn23 · MW420934.1 · 129,691–132,503 bp · −
trnA-UGC · MW420934.1 · 132,673–133,559 bp · −
trnI-GAU · MW420934.1 · 133,625–134,644 bp · −
rrn16 · MW420934.1 · 134,943–136,433 bp · −
trnV-GAC · MW420934.1 · 136,661–136,732 bp · −
ycf15 · MW420934.1 · 142,986–143,249 bp · −
ycf2 · MW420934.1 · 143,325–150,134 bp · −
psbK · MW420934.1 · 7,781–7,966 bp · +
psbI · MW420934.1 · 8,357–8,467 bp · +
trnG-CGA · MW420934.1 · 9,233–9,992 bp · +
trnR-UCU · MW420934.1 · 10,167–10,238 bp · +
trnC-GCA · MW420934.1 · 28,387–28,457 bp · +
petN · MW420934.1 · 29,160–29,249 bp · +
trnT-GGU · MW420934.1 · 31,861–31,932 bp · +
psbD · MW420934.1 · 33,241–34,302 bp · +
psbC · MW420934.1 · 34,250–35,671 bp · +
psbZ · MW420934.1 · 36,328–36,516 bp · +
trnG-GCC · MW420934.1 · 36,793–36,863 bp · +
trnS-GGA · MW420934.1 · 45,626–45,712 bp · +
trnL-UAA · MW420934.1 · 47,702–48,271 bp · +
trnF-GAA · MW420934.1 · 48,578–48,650 bp · +
trnM-CAU · MW420934.1 · 52,788–52,860 bp · +
rbcL · MW420934.1 · 55,728–57,170 bp · +
accD · MW420934.1 · 57,881–59,347 bp · +
psaI · MW420934.1 · 60,064–60,174 bp · +
ycf4 · MW420934.1 · 60,609–61,163 bp · +
cemA · MW420934.1 · 61,852–62,511 bp · +
petA · MW420934.1 · 62,718–63,680 bp · +
petL · MW420934.1 · 66,387–66,482 bp · +
petG · MW420934.1 · 66,657–66,770 bp · +
psbJ · MW420934.1 · 67,477–67,611 bp · +
rpl33 · MW420934.1 · 68,083–68,283 bp · +
rps18 · MW420934.1 · 68,458–68,763 bp · +
rps12 · MW420934.1 · 138,310–139,100 bp · +
psbB · MW420934.1 · 72,846–74,372 bp · +
psbT · MW420934.1 · 74,564–74,665 bp · +
psbH · MW420934.1 · 74,974–75,195 bp · +
petB · MW420934.1 · 75,320–76,687 bp · +
petD · MW420934.1 · 76,876–78,077 bp · +
ycf2 · MW420934.1 · 86,483–93,292 bp · +
ycf15 · MW420934.1 · 93,368–93,631 bp · +
trnV-GAC · MW420934.1 · 99,885–99,956 bp · +
rrn16 · MW420934.1 · 100,184–101,674 bp · +
trnI-GAU · MW420934.1 · 101,973–102,992 bp · +
trnA-UGC · MW420934.1 · 103,058–103,944 bp · +
rrn23 · MW420934.1 · 104,114–106,926 bp · +
rrn4.5 · MW420934.1 · 107,025–107,127 bp · +
rrn5 · MW420934.1 · 107,375–107,495 bp · +
trnR-ACG · MW420934.1 · 107,730–107,803 bp · +
trnN-GUU · MW420934.1 · 108,350–108,421 bp · +
rpl32 · MW420934.1 · 112,255–112,431 bp · +
trnL-UAG · MW420934.1 · 112,876–112,955 bp · +
ccsA · MW420934.1 · 113,053–114,027 bp · +
trnN-GUU · MW420934.1 · 128,196–128,267 bp · +
rps7 · MW420934.1 · 139,154–139,621 bp · +
ndhB · MW420934.1 · 139,896–142,107 bp · +
trnL-CAA · MW420934.1 · 142,650–142,730 bp · +
trnI-CAU · MW420934.1 · 150,223–150,296 bp · +
rpl23 · MW420934.1 · 150,456–150,737 bp · +
rpl2 · MW420934.1 · 150,756–152,238 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria hastifolia
ANNOTATED PLASTOME
MW420934.1
152,333 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38083 76166 114250 152333 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1675 4267 2593 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5177 6344 1168 Locate
trnQ-UUC gene − 7385 7456 72 Locate
psbK gene + 7781 7966 186 Locate
psbI gene + 8357 8467 111 Locate
trnS-GCU gene − 8586 8673 88 Locate
trnG-CGA gene + 9233 9992 760 Locate
trnR-UCU gene + 10167 10238 72 Locate
atpA gene − 10335 11858 1524 Locate
atpF gene − 11932 13159 1228 Locate
atpH gene − 13525 13770 246 Locate
atpI gene − 14767 15510 744 Locate
rps2 gene − 15859 16569 711 Locate
rpoC2 gene − 16786 20991 4206 Locate
rpoC1 gene − 21146 23981 2836 Locate
rpoB gene − 24008 27220 3213 Locate
trnC-GCA gene + 28387 28457 71 Locate
petN gene + 29160 29249 90 Locate
psbM gene − 30246 30350 105 Locate
trnD-GUC gene − 30876 30949 74 Locate
trnY-GUA gene − 31063 31146 84 Locate
trnE-UUC gene − 31206 31278 73 Locate
trnT-GGU gene + 31861 31932 72 Locate
psbD gene + 33241 34302 1062 Locate
psbC gene + 34250 35671 1422 Locate
trnS-UCA gene − 35916 36008 93 Locate
psbZ gene + 36328 36516 189 Locate
trnG-GCC gene + 36793 36863 71 Locate
trnfM-CAU gene − 37008 37081 74 Locate
rps14 gene − 37231 37533 303 Locate
psaB gene − 37661 39865 2205 Locate
psaA gene − 39891 42143 2253 Locate
ycf3 gene − 42819 44740 1922 Locate
trnS-GGA gene + 45626 45712 87 Locate
rps4 gene − 45998 46603 606 Locate
trnT-UGU gene − 46944 47016 73 Locate
trnL-UAA gene + 47702 48271 570 Locate
trnF-GAA gene + 48578 48650 73 Locate
ndhJ gene − 49299 49775 477 Locate
ndhK gene − 49883 50560 678 Locate
ndhC gene − 50613 50975 363 Locate
trnV-UAC gene − 51955 52607 653 Locate
trnM-CAU gene + 52788 52860 73 Locate
atpE gene − 53070 53471 402 Locate
atpB gene − 53468 54955 1488 Locate
rbcL gene + 55728 57170 1443 Locate
accD gene + 57881 59347 1467 Locate
psaI gene + 60064 60174 111 Locate
ycf4 gene + 60609 61163 555 Locate
cemA gene + 61852 62511 660 Locate
petA gene + 62718 63680 963 Locate
pabJ gene − 64698 64820 123 Locate
psbL gene − 64954 65070 117 Locate
psbF gene − 65094 65213 120 Locate
psbE gene − 65228 65479 252 Locate
petL gene + 66387 66482 96 Locate
petG gene + 66657 66770 114 Locate
trnW-CCA gene − 66889 66962 74 Locate
trnP-UGG gene − 67132 67205 74 Locate
psbJ gene + 67477 67611 135 Locate
rpl33 gene + 68083 68283 201 Locate
rps18 gene + 68458 68763 306 Locate
rpl20 gene − 69001 69387 387 Locate
rps12 gene − 70169 70294 126 Locate
clpP gene − 70437 72371 1935 Locate
psbB gene + 72846 74372 1527 Locate
psbT gene + 74564 74665 102 Locate
psbN gene − 74739 74870 132 Locate
psbH gene + 74974 75195 222 Locate
petB gene + 75320 76687 1368 Locate
petD gene + 76876 78077 1202 Locate
rpoA gene − 78240 79253 1014 Locate
rps11 gene − 79325 79741 417 Locate
rpl36 gene − 79843 79956 114 Locate
infA gene − 80052 80285 234 Locate
rps8 gene − 80405 80815 411 Locate
rpl14 gene − 80974 81342 369 Locate
rpl16 gene − 81469 82712 1244 Locate
rps3 gene − 82867 83529 663 Locate
rpl22 gene − 83531 83986 456 Locate
rps19 gene − 84046 84324 279 Locate
rpl2 gene − 84379 85861 1483 Locate
rpl23 gene − 85880 86161 282 Locate
trnI-CAU gene − 86321 86394 74 Locate
ycf2 gene + 86483 93292 6810 Locate
ycf15 gene + 93368 93631 264 Locate
trnL-CAA gene − 93887 93967 81 Locate
ndhB gene − 94510 96721 2212 Locate
rps7 gene − 96996 97463 468 Locate
rps12 gene − 97517 98307 791 Locate
trnV-GAC gene + 99885 99956 72 Locate
rrn16 gene + 100184 101674 1491 Locate
trnI-GAU gene + 101973 102992 1020 Locate
trnA-UGC gene + 103058 103944 887 Locate
rrn23 gene + 104114 106926 2813 Locate
rrn4.5 gene + 107025 107127 103 Locate
rrn5 gene + 107375 107495 121 Locate
trnR-ACG gene + 107730 107803 74 Locate
trnN-GUU gene + 108350 108421 72 Locate
ndhF gene − 109498 111738 2241 Locate
rpl32 gene + 112255 112431 177 Locate
trnL-UAG gene + 112876 112955 80 Locate
ccsA gene + 113053 114027 975 Locate
ndhD gene − 114260 115807 1548 Locate
psaC gene − 115882 116127 246 Locate
ndhE gene − 116384 116689 306 Locate
ndhG gene − 116920 117450 531 Locate
ndhI gene − 117815 118315 501 Locate
ndhA gene − 118396 120495 2100 Locate
ndhH gene − 120497 121678 1182 Locate
rps15 gene − 121781 122053 273 Locate
ycf1 gene − 122323 127866 5544 Locate
trnN-GUU gene + 128196 128267 72 Locate
trnR-ACG gene − 128814 128887 74 Locate
rrn5 gene − 129122 129242 121 Locate
rrn4.5 gene − 129490 129592 103 Locate
rrn23 gene − 129691 132503 2813 Locate
trnA-UGC gene − 132673 133559 887 Locate
trnI-GAU gene − 133625 134644 1020 Locate
rrn16 gene − 134943 136433 1491 Locate
trnV-GAC gene − 136661 136732 72 Locate
rps12 gene + 138310 139100 791 Locate
rps7 gene + 139154 139621 468 Locate
ndhB gene + 139896 142107 2212 Locate
trnL-CAA gene + 142650 142730 81 Locate
ycf15 gene − 142986 143249 264 Locate
ycf2 gene − 143325 150134 6810 Locate
trnI-CAU gene + 150223 150296 74 Locate
rpl23 gene + 150456 150737 282 Locate
rpl2 gene + 150756 152238 1483 Locate
Status Available
Accession MW420934.1
Length 152,333 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources