Scutellaria helenae chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059306.1 · 4–77 bp · −
psbA · PQ059306.1 · 380–1,438 bp · −
trnK-UUU · PQ059306.1 · 1,679–4,261 bp · −
matK · PQ059306.1 · 1,969–3,504 bp · −
rps16 · PQ059306.1 · 5,154–6,314 bp · −
trnQ-UUG · PQ059306.1 · 7,427–7,498 bp · −
trnS-GCU · PQ059306.1 · 8,635–8,722 bp · −
atpA · PQ059306.1 · 10,503–12,026 bp · −
atpF · PQ059306.1 · 12,099–13,329 bp · −
atpH · PQ059306.1 · 13,693–13,938 bp · −
atpI · PQ059306.1 · 14,919–15,662 bp · −
rps2 · PQ059306.1 · 16,009–16,719 bp · −
rpoC2 · PQ059306.1 · 16,934–21,190 bp · −
rpoC1 · PQ059306.1 · 21,293–24,134 bp · −
rpoB · PQ059306.1 · 24,161–27,373 bp · −
psbM · PQ059306.1 · 30,409–30,513 bp · −
trnD-GUC · PQ059306.1 · 31,047–31,120 bp · −
trnY-GUA · PQ059306.1 · 31,234–31,317 bp · −
trnE-UUC · PQ059306.1 · 31,377–31,449 bp · −
trnS-UGA · PQ059306.1 · 36,064–36,155 bp · −
trnfM-CAU · PQ059306.1 · 37,141–37,214 bp · −
rps14 · PQ059306.1 · 37,369–37,671 bp · −
psaB · PQ059306.1 · 37,799–40,003 bp · −
psaA · PQ059306.1 · 40,029–42,281 bp · −
ycf3 · PQ059306.1 · 42,977–44,907 bp · −
rps4 · PQ059306.1 · 46,158–46,763 bp · −
trnT-UGU · PQ059306.1 · 47,095–47,167 bp · −
ndhJ · PQ059306.1 · 49,441–49,917 bp · −
ndhK · PQ059306.1 · 50,026–50,703 bp · −
ndhC · PQ059306.1 · 50,756–51,118 bp · −
trnV-UAC · PQ059306.1 · 52,105–52,757 bp · −
atpE · PQ059306.1 · 53,227–53,628 bp · −
atpB · PQ059306.1 · 53,625–55,121 bp · −
psbJ · PQ059306.1 · 64,850–64,972 bp · −
psbL · PQ059306.1 · 65,106–65,327 bp · −
psbF · PQ059306.1 · 65,246–65,365 bp · −
psbE · PQ059306.1 · 65,380–65,631 bp · −
trnW-CCA · PQ059306.1 · 67,000–67,073 bp · −
trnP-UGG · PQ059306.1 · 67,243–67,316 bp · −
rpl20 · PQ059306.1 · 69,128–69,514 bp · −
rps12 · PQ059306.1 · 70,291–70,416 bp · −
rps12 · PQ059306.1 · 97,577–98,367 bp · −
clpP · PQ059306.1 · 70,557–72,488 bp · −
psbN · PQ059306.1 · 74,849–74,980 bp · −
rpoA · PQ059306.1 · 78,552–79,346 bp · −
rps11 · PQ059306.1 · 79,418–79,834 bp · −
rpl36 · PQ059306.1 · 79,936–80,049 bp · −
infA · PQ059306.1 · 80,144–80,377 bp · −
rps8 · PQ059306.1 · 80,501–80,911 bp · −
rpl14 · PQ059306.1 · 81,068–81,436 bp · −
rpl16 · PQ059306.1 · 81,563–82,799 bp · −
rps3 · PQ059306.1 · 82,955–83,617 bp · −
rpl22 · PQ059306.1 · 83,619–84,074 bp · −
rps19 · PQ059306.1 · 84,134–84,412 bp · −
rpl2 · PQ059306.1 · 84,466–85,947 bp · −
rpl23 · PQ059306.1 · 85,966–86,247 bp · −
trnI-CAU · PQ059306.1 · 86,407–86,480 bp · −
trnL-CAA · PQ059306.1 · 93,947–94,027 bp · −
ndhB · PQ059306.1 · 94,570–96,781 bp · −
rps7 · PQ059306.1 · 97,056–97,523 bp · −
trnN-GUU · PQ059306.1 · 108,406–108,477 bp · −
ndhF · PQ059306.1 · 109,554–111,794 bp · −
ndhD · PQ059306.1 · 114,309–115,811 bp · −
psaC · PQ059306.1 · 115,937–116,182 bp · −
ndhE · PQ059306.1 · 116,438–116,743 bp · −
ndhG · PQ059306.1 · 116,965–117,495 bp · −
ndhI · PQ059306.1 · 117,861–118,361 bp · −
ndhA · PQ059306.1 · 118,449–120,557 bp · −
ndhH · PQ059306.1 · 120,559–121,740 bp · −
rps15 · PQ059306.1 · 121,837–122,109 bp · −
ycf1 · PQ059306.1 · 122,307–127,949 bp · −
trnR-ACG · PQ059306.1 · 128,791–128,864 bp · −
rrn5 · PQ059306.1 · 129,099–129,219 bp · −
rrn4.5 · PQ059306.1 · 129,467–129,569 bp · −
rrn23 · PQ059306.1 · 129,668–132,479 bp · −
trnI-GAU · PQ059306.1 · 133,599–134,619 bp · −
ycf68 · PQ059306.1 · 134,171–134,464 bp · −
rrn16 · PQ059306.1 · 134,918–136,408 bp · −
trnV-GAC · PQ059306.1 · 136,635–136,706 bp · −
ycf15 · PQ059306.1 · 142,958–143,206 bp · −
ycf2 · PQ059306.1 · 143,297–150,076 bp · −
psbK · PQ059306.1 · 7,824–8,009 bp · +
psbI · PQ059306.1 · 8,404–8,514 bp · +
trnG-UCC · PQ059306.1 · 9,403–10,160 bp · +
trnR-UCU · PQ059306.1 · 10,335–10,406 bp · +
trnC-GCA · PQ059306.1 · 28,534–28,604 bp · +
petN · PQ059306.1 · 29,334–29,423 bp · +
trnT-GGU · PQ059306.1 · 32,018–32,089 bp · +
psbD · PQ059306.1 · 33,398–34,459 bp · +
psbC · PQ059306.1 · 34,407–35,828 bp · +
psbZ · PQ059306.1 · 36,463–36,651 bp · +
trnG-GCC · PQ059306.1 · 36,924–36,994 bp · +
trnS-GGA · PQ059306.1 · 45,790–45,876 bp · +
trnL-UAA · PQ059306.1 · 47,851–48,415 bp · +
trnF-GAA · PQ059306.1 · 48,727–48,799 bp · +
trnM-CAU · PQ059306.1 · 52,946–53,018 bp · +
rbcL · PQ059306.1 · 55,873–57,336 bp · +
accD · PQ059306.1 · 58,028–59,506 bp · +
psaI · PQ059306.1 · 60,216–60,326 bp · +
ycf4 · PQ059306.1 · 60,762–61,316 bp · +
cemA · PQ059306.1 · 62,058–62,657 bp · +
petA · PQ059306.1 · 62,864–63,826 bp · +
petL · PQ059306.1 · 66,497–66,592 bp · +
petG · PQ059306.1 · 66,768–66,881 bp · +
psaJ · PQ059306.1 · 67,525–67,722 bp · +
rpl33 · PQ059306.1 · 68,208–68,408 bp · +
rps18 · PQ059306.1 · 68,584–68,889 bp · +
rps12 · PQ059306.1 · 138,278–139,068 bp · +
psbB · PQ059306.1 · 72,955–74,481 bp · +
psbT · PQ059306.1 · 74,674–74,775 bp · +
psbH · PQ059306.1 · 75,084–75,305 bp · +
petB · PQ059306.1 · 75,431–76,798 bp · +
petD · PQ059306.1 · 76,987–78,177 bp · +
ycf2 · PQ059306.1 · 86,569–93,348 bp · +
ycf15 · PQ059306.1 · 93,439–93,687 bp · +
trnV-GAC · PQ059306.1 · 99,939–100,010 bp · +
rrn16 · PQ059306.1 · 100,237–101,727 bp · +
trnI-GAU · PQ059306.1 · 102,026–103,046 bp · +
trnA-UGC · PQ059306.1 · 103,111–103,996 bp · +
rrn23 · PQ059306.1 · 104,166–106,977 bp · +
rrn4.5 · PQ059306.1 · 107,076–107,178 bp · +
rrn5 · PQ059306.1 · 107,426–107,546 bp · +
trnR-ACG · PQ059306.1 · 107,781–107,854 bp · +
rpl32 · PQ059306.1 · 112,308–112,484 bp · +
trnL-UAG · PQ059306.1 · 112,932–113,011 bp · +
ccsA · PQ059306.1 · 113,101–114,075 bp · +
trnN-GUU · PQ059306.1 · 128,168–128,239 bp · +
rps7 · PQ059306.1 · 139,122–139,589 bp · +
ndhB · PQ059306.1 · 139,864–142,075 bp · +
trnL-CAA · PQ059306.1 · 142,618–142,698 bp · +
trnI-CAU · PQ059306.1 · 150,165–150,238 bp · +
rpl23 · PQ059306.1 · 150,398–150,679 bp · +
rpl2 · PQ059306.1 · 150,698–152,179 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria helenae
ANNOTATED PLASTOME
PQ059306.1
152,278 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38070 76139 114208 152278 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1679 4261 2583 Locate
matK gene − 1969 3504 1536 Locate
rps16 gene − 5154 6314 1161 Locate
trnQ-UUG gene − 7427 7498 72 Locate
psbK gene + 7824 8009 186 Locate
psbI gene + 8404 8514 111 Locate
trnS-GCU gene − 8635 8722 88 Locate
trnG-UCC gene + 9403 10160 758 Locate
trnR-UCU gene + 10335 10406 72 Locate
atpA gene − 10503 12026 1524 Locate
atpF gene − 12099 13329 1231 Locate
atpH gene − 13693 13938 246 Locate
atpI gene − 14919 15662 744 Locate
rps2 gene − 16009 16719 711 Locate
rpoC2 gene − 16934 21190 4257 Locate
rpoC1 gene − 21293 24134 2842 Locate
rpoB gene − 24161 27373 3213 Locate
trnC-GCA gene + 28534 28604 71 Locate
petN gene + 29334 29423 90 Locate
psbM gene − 30409 30513 105 Locate
trnD-GUC gene − 31047 31120 74 Locate
trnY-GUA gene − 31234 31317 84 Locate
trnE-UUC gene − 31377 31449 73 Locate
trnT-GGU gene + 32018 32089 72 Locate
psbD gene + 33398 34459 1062 Locate
psbC gene + 34407 35828 1422 Locate
trnS-UGA gene − 36064 36155 92 Locate
psbZ gene + 36463 36651 189 Locate
trnG-GCC gene + 36924 36994 71 Locate
trnfM-CAU gene − 37141 37214 74 Locate
rps14 gene − 37369 37671 303 Locate
psaB gene − 37799 40003 2205 Locate
psaA gene − 40029 42281 2253 Locate
ycf3 gene − 42977 44907 1931 Locate
trnS-GGA gene + 45790 45876 87 Locate
rps4 gene − 46158 46763 606 Locate
trnT-UGU gene − 47095 47167 73 Locate
trnL-UAA gene + 47851 48415 565 Locate
trnF-GAA gene + 48727 48799 73 Locate
ndhJ gene − 49441 49917 477 Locate
ndhK gene − 50026 50703 678 Locate
ndhC gene − 50756 51118 363 Locate
trnV-UAC gene − 52105 52757 653 Locate
trnM-CAU gene + 52946 53018 73 Locate
atpE gene − 53227 53628 402 Locate
atpB gene − 53625 55121 1497 Locate
rbcL gene + 55873 57336 1464 Locate
accD gene + 58028 59506 1479 Locate
psaI gene + 60216 60326 111 Locate
ycf4 gene + 60762 61316 555 Locate
cemA gene + 62058 62657 600 Locate
petA gene + 62864 63826 963 Locate
psbJ gene − 64850 64972 123 Locate
psbL gene − 65106 65327 222 Locate
psbF gene − 65246 65365 120 Locate
psbE gene − 65380 65631 252 Locate
petL gene + 66497 66592 96 Locate
petG gene + 66768 66881 114 Locate
trnW-CCA gene − 67000 67073 74 Locate
trnP-UGG gene − 67243 67316 74 Locate
psaJ gene + 67525 67722 198 Locate
rpl33 gene + 68208 68408 201 Locate
rps18 gene + 68584 68889 306 Locate
rpl20 gene − 69128 69514 387 Locate
rps12 gene − 70291 70416 126 Locate
clpP gene − 70557 72488 1932 Locate
psbB gene + 72955 74481 1527 Locate
psbT gene + 74674 74775 102 Locate
psbN gene − 74849 74980 132 Locate
psbH gene + 75084 75305 222 Locate
petB gene + 75431 76798 1368 Locate
petD gene + 76987 78177 1191 Locate
rpoA gene − 78552 79346 795 Locate
rps11 gene − 79418 79834 417 Locate
rpl36 gene − 79936 80049 114 Locate
infA gene − 80144 80377 234 Locate
rps8 gene − 80501 80911 411 Locate
rpl14 gene − 81068 81436 369 Locate
rpl16 gene − 81563 82799 1237 Locate
rps3 gene − 82955 83617 663 Locate
rpl22 gene − 83619 84074 456 Locate
rps19 gene − 84134 84412 279 Locate
rpl2 gene − 84466 85947 1482 Locate
rpl23 gene − 85966 86247 282 Locate
trnI-CAU gene − 86407 86480 74 Locate
ycf2 gene + 86569 93348 6780 Locate
ycf15 gene + 93439 93687 249 Locate
trnL-CAA gene − 93947 94027 81 Locate
ndhB gene − 94570 96781 2212 Locate
rps7 gene − 97056 97523 468 Locate
rps12 gene − 97577 98367 791 Locate
trnV-GAC gene + 99939 100010 72 Locate
rrn16 gene + 100237 101727 1491 Locate
trnI-GAU gene + 102026 103046 1021 Locate
trnA-UGC gene + 103111 103996 886 Locate
rrn23 gene + 104166 106977 2812 Locate
rrn4.5 gene + 107076 107178 103 Locate
rrn5 gene + 107426 107546 121 Locate
trnR-ACG gene + 107781 107854 74 Locate
trnN-GUU gene − 108406 108477 72 Locate
ndhF gene − 109554 111794 2241 Locate
rpl32 gene + 112308 112484 177 Locate
trnL-UAG gene + 112932 113011 80 Locate
ccsA gene + 113101 114075 975 Locate
ndhD gene − 114309 115811 1503 Locate
psaC gene − 115937 116182 246 Locate
ndhE gene − 116438 116743 306 Locate
ndhG gene − 116965 117495 531 Locate
ndhI gene − 117861 118361 501 Locate
ndhA gene − 118449 120557 2109 Locate
ndhH gene − 120559 121740 1182 Locate
rps15 gene − 121837 122109 273 Locate
ycf1 gene − 122307 127949 5643 Locate
trnN-GUU gene + 128168 128239 72 Locate
trnR-ACG gene − 128791 128864 74 Locate
rrn5 gene − 129099 129219 121 Locate
rrn4.5 gene − 129467 129569 103 Locate
rrn23 gene − 129668 132479 2812 Locate
trnI-GAU gene − 133599 134619 1021 Locate
ycf68 gene − 134171 134464 294 Locate
rrn16 gene − 134918 136408 1491 Locate
trnV-GAC gene − 136635 136706 72 Locate
rps12 gene + 138278 139068 791 Locate
rps7 gene + 139122 139589 468 Locate
ndhB gene + 139864 142075 2212 Locate
trnL-CAA gene + 142618 142698 81 Locate
ycf15 gene − 142958 143206 249 Locate
ycf2 gene − 143297 150076 6780 Locate
trnI-CAU gene + 150165 150238 74 Locate
rpl23 gene + 150398 150679 282 Locate
rpl2 gene + 150698 152179 1482 Locate
Status Available
Accession PQ059306.1
Length 152,278 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources