Scutellaria heterophylla chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420938.1 · 4–77 bp · −
psbA · MW420938.1 · 380–1,438 bp · −
trnK-UUU · MW420938.1 · 1,683–4,264 bp · −
matK · MW420938.1 · 1,969–3,510 bp · −
rps16 · MW420938.1 · 5,160–6,335 bp · −
trnQ-UUC · MW420938.1 · 7,446–7,517 bp · −
trnS-GCU · MW420938.1 · 8,652–8,739 bp · −
atpA · MW420938.1 · 10,517–12,040 bp · −
atpF · MW420938.1 · 12,114–13,344 bp · −
atpH · MW420938.1 · 13,708–13,953 bp · −
atpI · MW420938.1 · 14,936–15,679 bp · −
rps2 · MW420938.1 · 16,026–16,736 bp · −
rpoC2 · MW420938.1 · 16,942–21,144 bp · −
rpoC1 · MW420938.1 · 21,298–24,129 bp · −
rpoB · MW420938.1 · 24,156–27,368 bp · −
psbM · MW420938.1 · 30,433–30,537 bp · −
trnD-GUC · MW420938.1 · 31,070–31,143 bp · −
trnY-GUA · MW420938.1 · 31,257–31,340 bp · −
trnE-UUC · MW420938.1 · 31,400–31,472 bp · −
trnS-UCA · MW420938.1 · 36,081–36,173 bp · −
trnfM-CAU · MW420938.1 · 37,158–37,231 bp · −
rps14 · MW420938.1 · 37,386–37,688 bp · −
psaB · MW420938.1 · 37,816–40,020 bp · −
psaA · MW420938.1 · 40,046–42,298 bp · −
ycf3 · MW420938.1 · 42,990–44,916 bp · −
rps4 · MW420938.1 · 46,174–46,779 bp · −
trnT-UGU · MW420938.1 · 47,112–47,184 bp · −
ndhJ · MW420938.1 · 49,456–49,932 bp · −
ndhK · MW420938.1 · 50,041–50,718 bp · −
ndhC · MW420938.1 · 50,771–51,133 bp · −
trnV-UAC · MW420938.1 · 52,134–52,786 bp · −
atpE · MW420938.1 · 53,256–53,657 bp · −
atpB · MW420938.1 · 53,654–55,150 bp · −
pabJ · MW420938.1 · 64,891–65,013 bp · −
psbL · MW420938.1 · 65,147–65,263 bp · −
psbF · MW420938.1 · 65,287–65,406 bp · −
psbE · MW420938.1 · 65,421–65,672 bp · −
trnW-CCA · MW420938.1 · 67,041–67,114 bp · −
trnP-UGG · MW420938.1 · 67,284–67,357 bp · −
rpl20 · MW420938.1 · 69,150–69,536 bp · −
rps12 · MW420938.1 · 70,312–70,437 bp · −
rps12 · MW420938.1 · 97,630–98,420 bp · −
clpP · MW420938.1 · 70,579–72,511 bp · −
psbN · MW420938.1 · 74,871–75,002 bp · −
rpoA · MW420938.1 · 78,363–79,376 bp · −
rps11 · MW420938.1 · 79,448–79,864 bp · −
rpl36 · MW420938.1 · 79,966–80,079 bp · −
infA · MW420938.1 · 80,174–80,407 bp · −
rps8 · MW420938.1 · 80,528–80,938 bp · −
rpl14 · MW420938.1 · 81,096–81,464 bp · −
rpl16 · MW420938.1 · 81,591–82,852 bp · −
rps3 · MW420938.1 · 83,008–83,670 bp · −
rpl22 · MW420938.1 · 83,672–84,127 bp · −
rps19 · MW420938.1 · 84,187–84,465 bp · −
rpl2 · MW420938.1 · 84,519–86,000 bp · −
rpl23 · MW420938.1 · 86,019–86,300 bp · −
trnI-CAU · MW420938.1 · 86,460–86,533 bp · −
trnL-CAA · MW420938.1 · 94,000–94,080 bp · −
ndhB · MW420938.1 · 94,623–96,834 bp · −
rps7 · MW420938.1 · 97,109–97,576 bp · −
ndhF · MW420938.1 · 109,600–111,840 bp · −
ndhD · MW420938.1 · 114,364–115,893 bp · −
psaC · MW420938.1 · 115,992–116,237 bp · −
ndhE · MW420938.1 · 116,493–116,798 bp · −
ndhG · MW420938.1 · 117,042–117,572 bp · −
ndhI · MW420938.1 · 117,938–118,438 bp · −
ndhA · MW420938.1 · 118,526–120,635 bp · −
ndhH · MW420938.1 · 120,637–121,818 bp · −
rps15 · MW420938.1 · 121,915–122,187 bp · −
ycf1 · MW420938.1 · 122,401–127,932 bp · −
trnR-ACG · MW420938.1 · 128,885–128,958 bp · −
rrn5 · MW420938.1 · 129,193–129,313 bp · −
rrn4.5 · MW420938.1 · 129,561–129,663 bp · −
rrn23 · MW420938.1 · 129,762–132,564 bp · −
trnA-UGC · MW420938.1 · 132,734–133,619 bp · −
trnI-GAU · MW420938.1 · 133,685–134,704 bp · −
rrn16 · MW420938.1 · 135,003–136,494 bp · −
trnV-GAC · MW420938.1 · 136,721–136,792 bp · −
ycf15 · MW420938.1 · 143,045–143,242 bp · −
ycf2 · MW420938.1 · 143,384–150,163 bp · −
psbK · MW420938.1 · 7,843–8,028 bp · +
psbI · MW420938.1 · 8,422–8,532 bp · +
trnG-CGA · MW420938.1 · 9,419–10,174 bp · +
trnR-UCU · MW420938.1 · 10,349–10,420 bp · +
trnC-GCA · MW420938.1 · 28,529–28,599 bp · +
petN · MW420938.1 · 29,326–29,415 bp · +
trnT-GGU · MW420938.1 · 32,041–32,112 bp · +
psbD · MW420938.1 · 33,417–34,478 bp · +
psbC · MW420938.1 · 34,426–35,847 bp · +
psbZ · MW420938.1 · 36,481–36,669 bp · +
trnG-GCC · MW420938.1 · 36,943–37,013 bp · +
trnS-GGA · MW420938.1 · 45,806–45,892 bp · +
trnL-UAA · MW420938.1 · 47,871–48,435 bp · +
trnF-GAA · MW420938.1 · 48,741–48,813 bp · +
trnM-CAU · MW420938.1 · 52,975–53,047 bp · +
rbcL · MW420938.1 · 55,923–57,365 bp · +
accD · MW420938.1 · 58,057–59,535 bp · +
psaI · MW420938.1 · 60,245–60,355 bp · +
ycf4 · MW420938.1 · 60,791–61,345 bp · +
cemA · MW420938.1 · 62,002–62,700 bp · +
petA · MW420938.1 · 62,907–63,869 bp · +
petL · MW420938.1 · 66,539–66,634 bp · +
petG · MW420938.1 · 66,809–66,922 bp · +
psbJ · MW420938.1 · 67,629–67,763 bp · +
rpl33 · MW420938.1 · 68,223–68,423 bp · +
rps18 · MW420938.1 · 68,607–68,912 bp · +
rps12 · MW420938.1 · 138,365–139,155 bp · +
psbB · MW420938.1 · 72,978–74,504 bp · +
psbT · MW420938.1 · 74,696–74,797 bp · +
psbH · MW420938.1 · 75,106–75,327 bp · +
petB · MW420938.1 · 75,453–76,821 bp · +
petD · MW420938.1 · 77,010–78,200 bp · +
ycf2 · MW420938.1 · 86,622–93,401 bp · +
ycf15 · MW420938.1 · 93,543–93,740 bp · +
trnV-GAC · MW420938.1 · 99,993–100,064 bp · +
rrn16 · MW420938.1 · 100,291–101,782 bp · +
trnI-GAU · MW420938.1 · 102,081–103,100 bp · +
trnA-UGC · MW420938.1 · 103,166–104,051 bp · +
rrn23 · MW420938.1 · 104,221–107,023 bp · +
rrn4.5 · MW420938.1 · 107,122–107,224 bp · +
rrn5 · MW420938.1 · 107,472–107,592 bp · +
trnR-ACG · MW420938.1 · 107,827–107,900 bp · +
trnN-GUU · MW420938.1 · 108,452–108,523 bp · +
rpl32 · MW420938.1 · 112,353–112,529 bp · +
trnL-UAG · MW420938.1 · 112,975–113,054 bp · +
ccsA · MW420938.1 · 113,156–114,130 bp · +
trnN-GUU · MW420938.1 · 128,262–128,333 bp · +
rps7 · MW420938.1 · 139,209–139,676 bp · +
ndhB · MW420938.1 · 139,951–142,162 bp · +
trnL-CAA · MW420938.1 · 142,705–142,785 bp · +
trnI-CAU · MW420938.1 · 150,252–150,325 bp · +
rpl23 · MW420938.1 · 150,485–150,766 bp · +
rpl2 · MW420938.1 · 150,785–152,266 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria heterophylla
ANNOTATED PLASTOME
MW420938.1
152,365 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38091 76182 114274 152365 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1683 4264 2582 Locate
matK gene − 1969 3510 1542 Locate
rps16 gene − 5160 6335 1176 Locate
trnQ-UUC gene − 7446 7517 72 Locate
psbK gene + 7843 8028 186 Locate
psbI gene + 8422 8532 111 Locate
trnS-GCU gene − 8652 8739 88 Locate
trnG-CGA gene + 9419 10174 756 Locate
trnR-UCU gene + 10349 10420 72 Locate
atpA gene − 10517 12040 1524 Locate
atpF gene − 12114 13344 1231 Locate
atpH gene − 13708 13953 246 Locate
atpI gene − 14936 15679 744 Locate
rps2 gene − 16026 16736 711 Locate
rpoC2 gene − 16942 21144 4203 Locate
rpoC1 gene − 21298 24129 2832 Locate
rpoB gene − 24156 27368 3213 Locate
trnC-GCA gene + 28529 28599 71 Locate
petN gene + 29326 29415 90 Locate
psbM gene − 30433 30537 105 Locate
trnD-GUC gene − 31070 31143 74 Locate
trnY-GUA gene − 31257 31340 84 Locate
trnE-UUC gene − 31400 31472 73 Locate
trnT-GGU gene + 32041 32112 72 Locate
psbD gene + 33417 34478 1062 Locate
psbC gene + 34426 35847 1422 Locate
trnS-UCA gene − 36081 36173 93 Locate
psbZ gene + 36481 36669 189 Locate
trnG-GCC gene + 36943 37013 71 Locate
trnfM-CAU gene − 37158 37231 74 Locate
rps14 gene − 37386 37688 303 Locate
psaB gene − 37816 40020 2205 Locate
psaA gene − 40046 42298 2253 Locate
ycf3 gene − 42990 44916 1927 Locate
trnS-GGA gene + 45806 45892 87 Locate
rps4 gene − 46174 46779 606 Locate
trnT-UGU gene − 47112 47184 73 Locate
trnL-UAA gene + 47871 48435 565 Locate
trnF-GAA gene + 48741 48813 73 Locate
ndhJ gene − 49456 49932 477 Locate
ndhK gene − 50041 50718 678 Locate
ndhC gene − 50771 51133 363 Locate
trnV-UAC gene − 52134 52786 653 Locate
trnM-CAU gene + 52975 53047 73 Locate
atpE gene − 53256 53657 402 Locate
atpB gene − 53654 55150 1497 Locate
rbcL gene + 55923 57365 1443 Locate
accD gene + 58057 59535 1479 Locate
psaI gene + 60245 60355 111 Locate
ycf4 gene + 60791 61345 555 Locate
cemA gene + 62002 62700 699 Locate
petA gene + 62907 63869 963 Locate
pabJ gene − 64891 65013 123 Locate
psbL gene − 65147 65263 117 Locate
psbF gene − 65287 65406 120 Locate
psbE gene − 65421 65672 252 Locate
petL gene + 66539 66634 96 Locate
petG gene + 66809 66922 114 Locate
trnW-CCA gene − 67041 67114 74 Locate
trnP-UGG gene − 67284 67357 74 Locate
psbJ gene + 67629 67763 135 Locate
rpl33 gene + 68223 68423 201 Locate
rps18 gene + 68607 68912 306 Locate
rpl20 gene − 69150 69536 387 Locate
rps12 gene − 70312 70437 126 Locate
clpP gene − 70579 72511 1933 Locate
psbB gene + 72978 74504 1527 Locate
psbT gene + 74696 74797 102 Locate
psbN gene − 74871 75002 132 Locate
psbH gene + 75106 75327 222 Locate
petB gene + 75453 76821 1369 Locate
petD gene + 77010 78200 1191 Locate
rpoA gene − 78363 79376 1014 Locate
rps11 gene − 79448 79864 417 Locate
rpl36 gene − 79966 80079 114 Locate
infA gene − 80174 80407 234 Locate
rps8 gene − 80528 80938 411 Locate
rpl14 gene − 81096 81464 369 Locate
rpl16 gene − 81591 82852 1262 Locate
rps3 gene − 83008 83670 663 Locate
rpl22 gene − 83672 84127 456 Locate
rps19 gene − 84187 84465 279 Locate
rpl2 gene − 84519 86000 1482 Locate
rpl23 gene − 86019 86300 282 Locate
trnI-CAU gene − 86460 86533 74 Locate
ycf2 gene + 86622 93401 6780 Locate
ycf15 gene + 93543 93740 198 Locate
trnL-CAA gene − 94000 94080 81 Locate
ndhB gene − 94623 96834 2212 Locate
rps7 gene − 97109 97576 468 Locate
rps12 gene − 97630 98420 791 Locate
trnV-GAC gene + 99993 100064 72 Locate
rrn16 gene + 100291 101782 1492 Locate
trnI-GAU gene + 102081 103100 1020 Locate
trnA-UGC gene + 103166 104051 886 Locate
rrn23 gene + 104221 107023 2803 Locate
rrn4.5 gene + 107122 107224 103 Locate
rrn5 gene + 107472 107592 121 Locate
trnR-ACG gene + 107827 107900 74 Locate
trnN-GUU gene + 108452 108523 72 Locate
ndhF gene − 109600 111840 2241 Locate
rpl32 gene + 112353 112529 177 Locate
trnL-UAG gene + 112975 113054 80 Locate
ccsA gene + 113156 114130 975 Locate
ndhD gene − 114364 115893 1530 Locate
psaC gene − 115992 116237 246 Locate
ndhE gene − 116493 116798 306 Locate
ndhG gene − 117042 117572 531 Locate
ndhI gene − 117938 118438 501 Locate
ndhA gene − 118526 120635 2110 Locate
ndhH gene − 120637 121818 1182 Locate
rps15 gene − 121915 122187 273 Locate
ycf1 gene − 122401 127932 5532 Locate
trnN-GUU gene + 128262 128333 72 Locate
trnR-ACG gene − 128885 128958 74 Locate
rrn5 gene − 129193 129313 121 Locate
rrn4.5 gene − 129561 129663 103 Locate
rrn23 gene − 129762 132564 2803 Locate
trnA-UGC gene − 132734 133619 886 Locate
trnI-GAU gene − 133685 134704 1020 Locate
rrn16 gene − 135003 136494 1492 Locate
trnV-GAC gene − 136721 136792 72 Locate
rps12 gene + 138365 139155 791 Locate
rps7 gene + 139209 139676 468 Locate
ndhB gene + 139951 142162 2212 Locate
trnL-CAA gene + 142705 142785 81 Locate
ycf15 gene − 143045 143242 198 Locate
ycf2 gene − 143384 150163 6780 Locate
trnI-CAU gene + 150252 150325 74 Locate
rpl23 gene + 150485 150766 282 Locate
rpl2 gene + 150785 152266 1482 Locate
Status Available
Accession MW420938.1
Length 152,365 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources