Scutellaria heydei chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420941.1 · 10–83 bp · −
psbA · MW420941.1 · 381–1,439 bp · −
trnK-UUU · MW420941.1 · 1,686–4,253 bp · −
matK · MW420941.1 · 1,964–3,490 bp · −
rps16 · MW420941.1 · 5,157–6,316 bp · −
trnQ-UUC · MW420941.1 · 7,447–7,518 bp · −
trnS-GCU · MW420941.1 · 8,646–8,733 bp · −
atpA · MW420941.1 · 10,550–12,073 bp · −
atpF · MW420941.1 · 12,156–13,387 bp · −
atpH · MW420941.1 · 13,747–13,992 bp · −
atpI · MW420941.1 · 14,980–15,723 bp · −
rps2 · MW420941.1 · 16,069–16,779 bp · −
rpoC2 · MW420941.1 · 16,994–21,199 bp · −
rpoC1 · MW420941.1 · 21,354–24,195 bp · −
rpoB · MW420941.1 · 24,222–27,434 bp · −
psbM · MW420941.1 · 30,483–30,587 bp · −
trnD-GUC · MW420941.1 · 31,113–31,186 bp · −
trnY-GUA · MW420941.1 · 31,300–31,383 bp · −
trnE-UUC · MW420941.1 · 31,443–31,515 bp · −
trnS-UCA · MW420941.1 · 36,133–36,225 bp · −
trnfM-CAU · MW420941.1 · 37,222–37,295 bp · −
rps14 · MW420941.1 · 37,450–37,752 bp · −
psaB · MW420941.1 · 37,880–40,084 bp · −
psaA · MW420941.1 · 40,110–42,362 bp · −
ycf3 · MW420941.1 · 43,062–44,975 bp · −
rps4 · MW420941.1 · 46,226–46,831 bp · −
trnT-UGU · MW420941.1 · 47,171–47,243 bp · −
ndhJ · MW420941.1 · 49,515–49,991 bp · −
ndhK · MW420941.1 · 50,100–50,777 bp · −
ndhC · MW420941.1 · 50,831–51,193 bp · −
trnV-UAC · MW420941.1 · 52,165–52,817 bp · −
atpE · MW420941.1 · 53,273–53,674 bp · −
atpB · MW420941.1 · 53,671–55,167 bp · −
pabJ · MW420941.1 · 64,902–65,024 bp · −
psbL · MW420941.1 · 65,158–65,274 bp · −
psbF · MW420941.1 · 65,298–65,417 bp · −
psbE · MW420941.1 · 65,432–65,683 bp · −
trnW-CCA · MW420941.1 · 67,065–67,138 bp · −
trnP-UGG · MW420941.1 · 67,308–67,381 bp · −
rpl20 · MW420941.1 · 69,171–69,557 bp · −
rps12 · MW420941.1 · 70,341–70,466 bp · −
rps12 · MW420941.1 · 97,553–98,343 bp · −
clpP · MW420941.1 · 70,608–72,537 bp · −
psbN · MW420941.1 · 74,802–74,933 bp · −
rpoA · MW420941.1 · 78,329–79,300 bp · −
rps11 · MW420941.1 · 79,372–79,788 bp · −
rpl36 · MW420941.1 · 79,890–80,003 bp · −
infA · MW420941.1 · 80,098–80,331 bp · −
rps8 · MW420941.1 · 80,454–80,864 bp · −
rpl14 · MW420941.1 · 81,016–81,384 bp · −
rpl16 · MW420941.1 · 81,511–82,744 bp · −
rps3 · MW420941.1 · 82,900–83,562 bp · −
rpl22 · MW420941.1 · 83,564–84,019 bp · −
rps19 · MW420941.1 · 84,079–84,357 bp · −
rpl2 · MW420941.1 · 84,412–85,893 bp · −
rpl23 · MW420941.1 · 85,912–86,193 bp · −
trnI-CAU · MW420941.1 · 86,353–86,426 bp · −
trnL-CAA · MW420941.1 · 93,923–94,003 bp · −
ndhB · MW420941.1 · 94,546–96,757 bp · −
rps7 · MW420941.1 · 97,032–97,499 bp · −
ndhF · MW420941.1 · 109,508–111,769 bp · −
ndhD · MW420941.1 · 114,116–115,636 bp · −
psaC · MW420941.1 · 115,746–115,991 bp · −
ndhE · MW420941.1 · 116,243–116,548 bp · −
ndhG · MW420941.1 · 116,765–117,295 bp · −
ndhI · MW420941.1 · 117,662–118,162 bp · −
ndhA · MW420941.1 · 118,243–120,366 bp · −
ndhH · MW420941.1 · 120,368–121,549 bp · −
rps15 · MW420941.1 · 121,646–121,918 bp · −
ycf1 · MW420941.1 · 122,116–127,641 bp · −
trnR-ACG · MW420941.1 · 128,592–128,665 bp · −
rrn5 · MW420941.1 · 128,900–129,020 bp · −
rrn4.5 · MW420941.1 · 129,268–129,370 bp · −
rrn23 · MW420941.1 · 129,469–132,280 bp · −
trnA-UGC · MW420941.1 · 132,450–133,335 bp · −
trnI-GAU · MW420941.1 · 133,401–134,420 bp · −
rrn16 · MW420941.1 · 134,719–136,209 bp · −
trnV-GAC · MW420941.1 · 136,436–136,507 bp · −
ycf15 · MW420941.1 · 142,759–142,956 bp · −
ycf2 · MW420941.1 · 143,098–149,907 bp · −
psbK · MW420941.1 · 7,843–8,028 bp · +
psbI · MW420941.1 · 8,416–8,526 bp · +
trnG-CGA · MW420941.1 · 9,430–10,186 bp · +
trnR-UCU · MW420941.1 · 10,382–10,453 bp · +
trnC-GCA · MW420941.1 · 28,595–28,665 bp · +
petN · MW420941.1 · 29,377–29,466 bp · +
trnT-GGU · MW420941.1 · 32,091–32,162 bp · +
psbD · MW420941.1 · 33,468–34,529 bp · +
psbC · MW420941.1 · 34,477–35,898 bp · +
psbZ · MW420941.1 · 36,541–36,729 bp · +
trnG-GCC · MW420941.1 · 37,006–37,076 bp · +
trnS-GGA · MW420941.1 · 45,864–45,950 bp · +
trnL-UAA · MW420941.1 · 47,928–48,488 bp · +
trnF-GAA · MW420941.1 · 48,795–48,867 bp · +
trnM-CAU · MW420941.1 · 53,006–53,078 bp · +
rbcL · MW420941.1 · 55,941–57,383 bp · +
accD · MW420941.1 · 58,108–59,586 bp · +
psaI · MW420941.1 · 60,279–60,389 bp · +
ycf4 · MW420941.1 · 60,823–61,377 bp · +
cemA · MW420941.1 · 62,067–62,726 bp · +
petA · MW420941.1 · 62,933–63,895 bp · +
petL · MW420941.1 · 66,562–66,657 bp · +
petG · MW420941.1 · 66,833–66,946 bp · +
psbJ · MW420941.1 · 67,653–67,787 bp · +
rpl33 · MW420941.1 · 68,257–68,457 bp · +
rps18 · MW420941.1 · 68,632–68,937 bp · +
rps12 · MW420941.1 · 138,079–138,869 bp · +
psbB · MW420941.1 · 72,917–74,443 bp · +
psbT · MW420941.1 · 74,634–74,741 bp · +
psbH · MW420941.1 · 75,037–75,258 bp · +
petB · MW420941.1 · 75,383–76,752 bp · +
petD · MW420941.1 · 76,935–78,144 bp · +
ycf2 · MW420941.1 · 86,515–93,324 bp · +
ycf15 · MW420941.1 · 93,466–93,663 bp · +
trnV-GAC · MW420941.1 · 99,915–99,986 bp · +
rrn16 · MW420941.1 · 100,213–101,703 bp · +
trnI-GAU · MW420941.1 · 102,002–103,021 bp · +
trnA-UGC · MW420941.1 · 103,087–103,972 bp · +
rrn23 · MW420941.1 · 104,142–106,953 bp · +
rrn4.5 · MW420941.1 · 107,052–107,154 bp · +
rrn5 · MW420941.1 · 107,402–107,522 bp · +
trnR-ACG · MW420941.1 · 107,757–107,830 bp · +
trnN-GUU · MW420941.1 · 108,379–108,450 bp · +
rpl32 · MW420941.1 · 112,097–112,273 bp · +
trnL-UAG · MW420941.1 · 112,720–112,799 bp · +
ccsA · MW420941.1 · 112,902–113,876 bp · +
trnN-GUU · MW420941.1 · 127,972–128,043 bp · +
rps7 · MW420941.1 · 138,923–139,390 bp · +
ndhB · MW420941.1 · 139,665–141,876 bp · +
trnL-CAA · MW420941.1 · 142,419–142,499 bp · +
trnI-CAU · MW420941.1 · 149,996–150,069 bp · +
rpl23 · MW420941.1 · 150,229–150,510 bp · +
rpl2 · MW420941.1 · 150,529–152,010 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria heydei
ANNOTATED PLASTOME
MW420941.1
152,110 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38028 76055 114082 152110 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1686 4253 2568 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUC gene − 7447 7518 72 Locate
psbK gene + 7843 8028 186 Locate
psbI gene + 8416 8526 111 Locate
trnS-GCU gene − 8646 8733 88 Locate
trnG-CGA gene + 9430 10186 757 Locate
trnR-UCU gene + 10382 10453 72 Locate
atpA gene − 10550 12073 1524 Locate
atpF gene − 12156 13387 1232 Locate
atpH gene − 13747 13992 246 Locate
atpI gene − 14980 15723 744 Locate
rps2 gene − 16069 16779 711 Locate
rpoC2 gene − 16994 21199 4206 Locate
rpoC1 gene − 21354 24195 2842 Locate
rpoB gene − 24222 27434 3213 Locate
trnC-GCA gene + 28595 28665 71 Locate
petN gene + 29377 29466 90 Locate
psbM gene − 30483 30587 105 Locate
trnD-GUC gene − 31113 31186 74 Locate
trnY-GUA gene − 31300 31383 84 Locate
trnE-UUC gene − 31443 31515 73 Locate
trnT-GGU gene + 32091 32162 72 Locate
psbD gene + 33468 34529 1062 Locate
psbC gene + 34477 35898 1422 Locate
trnS-UCA gene − 36133 36225 93 Locate
psbZ gene + 36541 36729 189 Locate
trnG-GCC gene + 37006 37076 71 Locate
trnfM-CAU gene − 37222 37295 74 Locate
rps14 gene − 37450 37752 303 Locate
psaB gene − 37880 40084 2205 Locate
psaA gene − 40110 42362 2253 Locate
ycf3 gene − 43062 44975 1914 Locate
trnS-GGA gene + 45864 45950 87 Locate
rps4 gene − 46226 46831 606 Locate
trnT-UGU gene − 47171 47243 73 Locate
trnL-UAA gene + 47928 48488 561 Locate
trnF-GAA gene + 48795 48867 73 Locate
ndhJ gene − 49515 49991 477 Locate
ndhK gene − 50100 50777 678 Locate
ndhC gene − 50831 51193 363 Locate
trnV-UAC gene − 52165 52817 653 Locate
trnM-CAU gene + 53006 53078 73 Locate
atpE gene − 53273 53674 402 Locate
atpB gene − 53671 55167 1497 Locate
rbcL gene + 55941 57383 1443 Locate
accD gene + 58108 59586 1479 Locate
psaI gene + 60279 60389 111 Locate
ycf4 gene + 60823 61377 555 Locate
cemA gene + 62067 62726 660 Locate
petA gene + 62933 63895 963 Locate
pabJ gene − 64902 65024 123 Locate
psbL gene − 65158 65274 117 Locate
psbF gene − 65298 65417 120 Locate
psbE gene − 65432 65683 252 Locate
petL gene + 66562 66657 96 Locate
petG gene + 66833 66946 114 Locate
trnW-CCA gene − 67065 67138 74 Locate
trnP-UGG gene − 67308 67381 74 Locate
psbJ gene + 67653 67787 135 Locate
rpl33 gene + 68257 68457 201 Locate
rps18 gene + 68632 68937 306 Locate
rpl20 gene − 69171 69557 387 Locate
rps12 gene − 70341 70466 126 Locate
clpP gene − 70608 72537 1930 Locate
psbB gene + 72917 74443 1527 Locate
psbT gene + 74634 74741 108 Locate
psbN gene − 74802 74933 132 Locate
psbH gene + 75037 75258 222 Locate
petB gene + 75383 76752 1370 Locate
petD gene + 76935 78144 1210 Locate
rpoA gene − 78329 79300 972 Locate
rps11 gene − 79372 79788 417 Locate
rpl36 gene − 79890 80003 114 Locate
infA gene − 80098 80331 234 Locate
rps8 gene − 80454 80864 411 Locate
rpl14 gene − 81016 81384 369 Locate
rpl16 gene − 81511 82744 1234 Locate
rps3 gene − 82900 83562 663 Locate
rpl22 gene − 83564 84019 456 Locate
rps19 gene − 84079 84357 279 Locate
rpl2 gene − 84412 85893 1482 Locate
rpl23 gene − 85912 86193 282 Locate
trnI-CAU gene − 86353 86426 74 Locate
ycf2 gene + 86515 93324 6810 Locate
ycf15 gene + 93466 93663 198 Locate
trnL-CAA gene − 93923 94003 81 Locate
ndhB gene − 94546 96757 2212 Locate
rps7 gene − 97032 97499 468 Locate
rps12 gene − 97553 98343 791 Locate
trnV-GAC gene + 99915 99986 72 Locate
rrn16 gene + 100213 101703 1491 Locate
trnI-GAU gene + 102002 103021 1020 Locate
trnA-UGC gene + 103087 103972 886 Locate
rrn23 gene + 104142 106953 2812 Locate
rrn4.5 gene + 107052 107154 103 Locate
rrn5 gene + 107402 107522 121 Locate
trnR-ACG gene + 107757 107830 74 Locate
trnN-GUU gene + 108379 108450 72 Locate
ndhF gene − 109508 111769 2262 Locate
rpl32 gene + 112097 112273 177 Locate
trnL-UAG gene + 112720 112799 80 Locate
ccsA gene + 112902 113876 975 Locate
ndhD gene − 114116 115636 1521 Locate
psaC gene − 115746 115991 246 Locate
ndhE gene − 116243 116548 306 Locate
ndhG gene − 116765 117295 531 Locate
ndhI gene − 117662 118162 501 Locate
ndhA gene − 118243 120366 2124 Locate
ndhH gene − 120368 121549 1182 Locate
rps15 gene − 121646 121918 273 Locate
ycf1 gene − 122116 127641 5526 Locate
trnN-GUU gene + 127972 128043 72 Locate
trnR-ACG gene − 128592 128665 74 Locate
rrn5 gene − 128900 129020 121 Locate
rrn4.5 gene − 129268 129370 103 Locate
rrn23 gene − 129469 132280 2812 Locate
trnA-UGC gene − 132450 133335 886 Locate
trnI-GAU gene − 133401 134420 1020 Locate
rrn16 gene − 134719 136209 1491 Locate
trnV-GAC gene − 136436 136507 72 Locate
rps12 gene + 138079 138869 791 Locate
rps7 gene + 138923 139390 468 Locate
ndhB gene + 139665 141876 2212 Locate
trnL-CAA gene + 142419 142499 81 Locate
ycf15 gene − 142759 142956 198 Locate
ycf2 gene − 143098 149907 6810 Locate
trnI-CAU gene + 149996 150069 74 Locate
rpl23 gene + 150229 150510 282 Locate
rpl2 gene + 150529 152010 1482 Locate
Status Available
Accession MW420941.1
Length 152,110 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources