Scutellaria hissarica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420942.1 · 3–76 bp · −
psbA · MW420942.1 · 377–1,435 bp · −
trnK-UUU · MW420942.1 · 1,680–4,265 bp · −
matK · MW420942.1 · 1,965–3,509 bp · −
rps16 · MW420942.1 · 5,178–6,347 bp · −
trnQ-UUC · MW420942.1 · 7,459–7,530 bp · −
trnS-GCU · MW420942.1 · 8,648–8,735 bp · −
atpA · MW420942.1 · 10,516–12,039 bp · −
atpF · MW420942.1 · 12,122–13,351 bp · −
atpH · MW420942.1 · 13,724–13,969 bp · −
atpI · MW420942.1 · 14,964–15,707 bp · −
rps2 · MW420942.1 · 16,055–16,765 bp · −
rpoC2 · MW420942.1 · 16,982–21,181 bp · −
rpoC1 · MW420942.1 · 21,336–24,163 bp · −
rpoB · MW420942.1 · 24,190–27,402 bp · −
psbM · MW420942.1 · 30,440–30,553 bp · −
trnD-GUC · MW420942.1 · 31,085–31,158 bp · −
trnY-GUA · MW420942.1 · 31,272–31,355 bp · −
trnE-UUC · MW420942.1 · 31,415–31,487 bp · −
trnS-UCA · MW420942.1 · 36,111–36,203 bp · −
trnfM-CAU · MW420942.1 · 37,198–37,271 bp · −
rps14 · MW420942.1 · 37,421–37,723 bp · −
psaB · MW420942.1 · 37,851–40,055 bp · −
psaA · MW420942.1 · 40,081–42,333 bp · −
ycf3 · MW420942.1 · 43,033–44,959 bp · −
rps4 · MW420942.1 · 46,211–46,816 bp · −
trnT-UGU · MW420942.1 · 47,156–47,228 bp · −
ndhJ · MW420942.1 · 49,515–49,991 bp · −
ndhK · MW420942.1 · 50,100–50,777 bp · −
ndhC · MW420942.1 · 50,830–51,192 bp · −
trnV-UAC · MW420942.1 · 52,181–52,839 bp · −
atpE · MW420942.1 · 53,301–53,702 bp · −
atpB · MW420942.1 · 53,699–55,195 bp · −
pabJ · MW420942.1 · 64,400–64,522 bp · −
psbL · MW420942.1 · 64,657–64,773 bp · −
psbF · MW420942.1 · 64,797–64,916 bp · −
psbE · MW420942.1 · 64,931–65,182 bp · −
trnW-CCA · MW420942.1 · 66,587–66,660 bp · −
trnP-UGG · MW420942.1 · 66,831–66,904 bp · −
rpl20 · MW420942.1 · 68,707–69,093 bp · −
rps12 · MW420942.1 · 69,876–70,001 bp · −
rps12 · MW420942.1 · 97,208–97,998 bp · −
clpP · MW420942.1 · 70,143–72,074 bp · −
psbN · MW420942.1 · 74,416–74,547 bp · −
rpoA · MW420942.1 · 77,928–78,944 bp · −
rps11 · MW420942.1 · 79,016–79,432 bp · −
rpl36 · MW420942.1 · 79,534–79,647 bp · −
infA · MW420942.1 · 79,743–79,976 bp · −
rps8 · MW420942.1 · 80,099–80,509 bp · −
rpl14 · MW420942.1 · 80,670–81,038 bp · −
rpl16 · MW420942.1 · 81,165–82,391 bp · −
rps3 · MW420942.1 · 82,546–83,208 bp · −
rpl22 · MW420942.1 · 83,210–83,665 bp · −
rps19 · MW420942.1 · 83,725–84,003 bp · −
rpl2 · MW420942.1 · 84,059–85,541 bp · −
rpl23 · MW420942.1 · 85,560–85,841 bp · −
trnI-CAU · MW420942.1 · 86,001–86,074 bp · −
trnL-CAA · MW420942.1 · 93,578–93,658 bp · −
ndhB · MW420942.1 · 94,201–96,412 bp · −
rps7 · MW420942.1 · 96,687–97,154 bp · −
ndhF · MW420942.1 · 109,187–111,427 bp · −
ndhD · MW420942.1 · 113,954–115,483 bp · −
psaC · MW420942.1 · 115,593–115,838 bp · −
ndhE · MW420942.1 · 116,094–116,399 bp · −
ndhG · MW420942.1 · 116,624–117,154 bp · −
ndhI · MW420942.1 · 117,503–118,003 bp · −
ndhA · MW420942.1 · 118,084–120,193 bp · −
ndhH · MW420942.1 · 120,195–121,376 bp · −
rps15 · MW420942.1 · 121,473–121,745 bp · −
ycf1 · MW420942.1 · 122,016–127,565 bp · −
trnR-ACG · MW420942.1 · 128,522–128,595 bp · −
rrn5 · MW420942.1 · 128,830–128,950 bp · −
rrn4.5 · MW420942.1 · 129,198–129,300 bp · −
rrn23 · MW420942.1 · 129,399–132,210 bp · −
trnA-UGC · MW420942.1 · 132,380–133,266 bp · −
trnI-GAU · MW420942.1 · 133,332–134,351 bp · −
rrn16 · MW420942.1 · 134,650–136,140 bp · −
trnV-GAC · MW420942.1 · 136,363–136,434 bp · −
ycf15 · MW420942.1 · 142,688–142,885 bp · −
ycf2 · MW420942.1 · 143,027–149,842 bp · −
psbK · MW420942.1 · 7,855–8,040 bp · +
psbI · MW420942.1 · 8,431–8,541 bp · +
trnG-CGA · MW420942.1 · 9,428–10,181 bp · +
trnR-UCU · MW420942.1 · 10,348–10,419 bp · +
trnC-GCA · MW420942.1 · 28,570–28,640 bp · +
petN · MW420942.1 · 29,370–29,459 bp · +
trnT-GGU · MW420942.1 · 32,059–32,130 bp · +
psbD · MW420942.1 · 33,445–34,506 bp · +
psbC · MW420942.1 · 34,454–35,875 bp · +
psbZ · MW420942.1 · 36,523–36,711 bp · +
trnG-GCC · MW420942.1 · 36,983–37,053 bp · +
trnS-GGA · MW420942.1 · 45,841–45,927 bp · +
trnL-UAA · MW420942.1 · 47,920–48,487 bp · +
trnF-GAA · MW420942.1 · 48,792–48,864 bp · +
trnM-CAU · MW420942.1 · 53,020–53,092 bp · +
rbcL · MW420942.1 · 55,976–57,418 bp · +
accD · MW420942.1 · 58,151–59,641 bp · +
psaI · MW420942.1 · 59,879–59,989 bp · +
ycf4 · MW420942.1 · 60,423–60,977 bp · +
cemA · MW420942.1 · 61,544–62,203 bp · +
petA · MW420942.1 · 62,410–63,372 bp · +
petL · MW420942.1 · 66,094–66,189 bp · +
petG · MW420942.1 · 66,365–66,478 bp · +
psbJ · MW420942.1 · 67,177–67,311 bp · +
rpl33 · MW420942.1 · 67,786–67,986 bp · +
rps18 · MW420942.1 · 68,161–68,466 bp · +
rps12 · MW420942.1 · 138,007–138,797 bp · +
psbB · MW420942.1 · 72,542–74,068 bp · +
psbT · MW420942.1 · 74,248–74,355 bp · +
psbH · MW420942.1 · 74,651–74,872 bp · +
petB · MW420942.1 · 74,997–76,365 bp · +
petD · MW420942.1 · 76,554–77,765 bp · +
ycf2 · MW420942.1 · 86,163–92,978 bp · +
ycf15 · MW420942.1 · 93,120–93,317 bp · +
trnV-GAC · MW420942.1 · 99,571–99,642 bp · +
rrn16 · MW420942.1 · 99,865–101,355 bp · +
trnI-GAU · MW420942.1 · 101,654–102,673 bp · +
trnA-UGC · MW420942.1 · 102,739–103,625 bp · +
rrn23 · MW420942.1 · 103,795–106,606 bp · +
rrn4.5 · MW420942.1 · 106,705–106,807 bp · +
rrn5 · MW420942.1 · 107,055–107,175 bp · +
trnR-ACG · MW420942.1 · 107,410–107,483 bp · +
trnN-GUU · MW420942.1 · 108,039–108,110 bp · +
rpl32 · MW420942.1 · 111,949–112,125 bp · +
trnL-UAG · MW420942.1 · 112,560–112,639 bp · +
ccsA · MW420942.1 · 112,741–113,715 bp · +
trnN-GUU · MW420942.1 · 127,895–127,966 bp · +
rps7 · MW420942.1 · 138,851–139,318 bp · +
ndhB · MW420942.1 · 139,593–141,804 bp · +
trnL-CAA · MW420942.1 · 142,347–142,427 bp · +
trnI-CAU · MW420942.1 · 149,931–150,004 bp · +
rpl23 · MW420942.1 · 150,164–150,445 bp · +
rpl2 · MW420942.1 · 150,464–151,946 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria hissarica
ANNOTATED PLASTOME
MW420942.1
152,042 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38010 76021 114032 152042 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 377 1435 1059 Locate
trnK-UUU gene − 1680 4265 2586 Locate
matK gene − 1965 3509 1545 Locate
rps16 gene − 5178 6347 1170 Locate
trnQ-UUC gene − 7459 7530 72 Locate
psbK gene + 7855 8040 186 Locate
psbI gene + 8431 8541 111 Locate
trnS-GCU gene − 8648 8735 88 Locate
trnG-CGA gene + 9428 10181 754 Locate
trnR-UCU gene + 10348 10419 72 Locate
atpA gene − 10516 12039 1524 Locate
atpF gene − 12122 13351 1230 Locate
atpH gene − 13724 13969 246 Locate
atpI gene − 14964 15707 744 Locate
rps2 gene − 16055 16765 711 Locate
rpoC2 gene − 16982 21181 4200 Locate
rpoC1 gene − 21336 24163 2828 Locate
rpoB gene − 24190 27402 3213 Locate
trnC-GCA gene + 28570 28640 71 Locate
petN gene + 29370 29459 90 Locate
psbM gene − 30440 30553 114 Locate
trnD-GUC gene − 31085 31158 74 Locate
trnY-GUA gene − 31272 31355 84 Locate
trnE-UUC gene − 31415 31487 73 Locate
trnT-GGU gene + 32059 32130 72 Locate
psbD gene + 33445 34506 1062 Locate
psbC gene + 34454 35875 1422 Locate
trnS-UCA gene − 36111 36203 93 Locate
psbZ gene + 36523 36711 189 Locate
trnG-GCC gene + 36983 37053 71 Locate
trnfM-CAU gene − 37198 37271 74 Locate
rps14 gene − 37421 37723 303 Locate
psaB gene − 37851 40055 2205 Locate
psaA gene − 40081 42333 2253 Locate
ycf3 gene − 43033 44959 1927 Locate
trnS-GGA gene + 45841 45927 87 Locate
rps4 gene − 46211 46816 606 Locate
trnT-UGU gene − 47156 47228 73 Locate
trnL-UAA gene + 47920 48487 568 Locate
trnF-GAA gene + 48792 48864 73 Locate
ndhJ gene − 49515 49991 477 Locate
ndhK gene − 50100 50777 678 Locate
ndhC gene − 50830 51192 363 Locate
trnV-UAC gene − 52181 52839 659 Locate
trnM-CAU gene + 53020 53092 73 Locate
atpE gene − 53301 53702 402 Locate
atpB gene − 53699 55195 1497 Locate
rbcL gene + 55976 57418 1443 Locate
accD gene + 58151 59641 1491 Locate
psaI gene + 59879 59989 111 Locate
ycf4 gene + 60423 60977 555 Locate
cemA gene + 61544 62203 660 Locate
petA gene + 62410 63372 963 Locate
pabJ gene − 64400 64522 123 Locate
psbL gene − 64657 64773 117 Locate
psbF gene − 64797 64916 120 Locate
psbE gene − 64931 65182 252 Locate
petL gene + 66094 66189 96 Locate
petG gene + 66365 66478 114 Locate
trnW-CCA gene − 66587 66660 74 Locate
trnP-UGG gene − 66831 66904 74 Locate
psbJ gene + 67177 67311 135 Locate
rpl33 gene + 67786 67986 201 Locate
rps18 gene + 68161 68466 306 Locate
rpl20 gene − 68707 69093 387 Locate
rps12 gene − 69876 70001 126 Locate
clpP gene − 70143 72074 1932 Locate
psbB gene + 72542 74068 1527 Locate
psbT gene + 74248 74355 108 Locate
psbN gene − 74416 74547 132 Locate
psbH gene + 74651 74872 222 Locate
petB gene + 74997 76365 1369 Locate
petD gene + 76554 77765 1212 Locate
rpoA gene − 77928 78944 1017 Locate
rps11 gene − 79016 79432 417 Locate
rpl36 gene − 79534 79647 114 Locate
infA gene − 79743 79976 234 Locate
rps8 gene − 80099 80509 411 Locate
rpl14 gene − 80670 81038 369 Locate
rpl16 gene − 81165 82391 1227 Locate
rps3 gene − 82546 83208 663 Locate
rpl22 gene − 83210 83665 456 Locate
rps19 gene − 83725 84003 279 Locate
rpl2 gene − 84059 85541 1483 Locate
rpl23 gene − 85560 85841 282 Locate
trnI-CAU gene − 86001 86074 74 Locate
ycf2 gene + 86163 92978 6816 Locate
ycf15 gene + 93120 93317 198 Locate
trnL-CAA gene − 93578 93658 81 Locate
ndhB gene − 94201 96412 2212 Locate
rps7 gene − 96687 97154 468 Locate
rps12 gene − 97208 97998 791 Locate
trnV-GAC gene + 99571 99642 72 Locate
rrn16 gene + 99865 101355 1491 Locate
trnI-GAU gene + 101654 102673 1020 Locate
trnA-UGC gene + 102739 103625 887 Locate
rrn23 gene + 103795 106606 2812 Locate
rrn4.5 gene + 106705 106807 103 Locate
rrn5 gene + 107055 107175 121 Locate
trnR-ACG gene + 107410 107483 74 Locate
trnN-GUU gene + 108039 108110 72 Locate
ndhF gene − 109187 111427 2241 Locate
rpl32 gene + 111949 112125 177 Locate
trnL-UAG gene + 112560 112639 80 Locate
ccsA gene + 112741 113715 975 Locate
ndhD gene − 113954 115483 1530 Locate
psaC gene − 115593 115838 246 Locate
ndhE gene − 116094 116399 306 Locate
ndhG gene − 116624 117154 531 Locate
ndhI gene − 117503 118003 501 Locate
ndhA gene − 118084 120193 2110 Locate
ndhH gene − 120195 121376 1182 Locate
rps15 gene − 121473 121745 273 Locate
ycf1 gene − 122016 127565 5550 Locate
trnN-GUU gene + 127895 127966 72 Locate
trnR-ACG gene − 128522 128595 74 Locate
rrn5 gene − 128830 128950 121 Locate
rrn4.5 gene − 129198 129300 103 Locate
rrn23 gene − 129399 132210 2812 Locate
trnA-UGC gene − 132380 133266 887 Locate
trnI-GAU gene − 133332 134351 1020 Locate
rrn16 gene − 134650 136140 1491 Locate
trnV-GAC gene − 136363 136434 72 Locate
rps12 gene + 138007 138797 791 Locate
rps7 gene + 138851 139318 468 Locate
ndhB gene + 139593 141804 2212 Locate
trnL-CAA gene + 142347 142427 81 Locate
ycf15 gene − 142688 142885 198 Locate
ycf2 gene − 143027 149842 6816 Locate
trnI-CAU gene + 149931 150004 74 Locate
rpl23 gene + 150164 150445 282 Locate
rpl2 gene + 150464 151946 1483 Locate
Status Available
Accession MW420942.1
Length 152,042 bp
GC content 38.2%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources