Scutellaria holosericea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130066.1 · 4–77 bp · −
psbA · PZ130066.1 · 378–1,436 bp · −
trnK-UUU · PZ130066.1 · 1,677–4,270 bp · −
matK · PZ130066.1 · 1,966–3,510 bp · −
rps16 · PZ130066.1 · 5,179–6,349 bp · −
trnQ-UUG · PZ130066.1 · 7,461–7,532 bp · −
trnS-GCU · PZ130066.1 · 8,648–8,735 bp · −
atpA · PZ130066.1 · 10,515–12,038 bp · −
atpF · PZ130066.1 · 12,133–13,350 bp · −
atpH · PZ130066.1 · 13,725–13,970 bp · −
atpI · PZ130066.1 · 14,964–15,707 bp · −
rps2 · PZ130066.1 · 16,055–16,891 bp · −
rpoC2 · PZ130066.1 · 16,982–21,172 bp · −
rpoC1 · PZ130066.1 · 21,327–24,155 bp · −
rpoB · PZ130066.1 · 24,182–27,394 bp · −
psbM · PZ130066.1 · 30,427–30,540 bp · −
trnD-GUC · PZ130066.1 · 31,072–31,145 bp · −
trnY-GUA · PZ130066.1 · 31,259–31,342 bp · −
trnE-UUC · PZ130066.1 · 31,402–31,474 bp · −
trnS-UGA · PZ130066.1 · 36,095–36,186 bp · −
trnfM-CAU · PZ130066.1 · 37,181–37,254 bp · −
rps14 · PZ130066.1 · 37,404–37,706 bp · −
psaB · PZ130066.1 · 37,834–40,038 bp · −
psaA · PZ130066.1 · 40,064–42,316 bp · −
ycf3 · PZ130066.1 · 43,021–44,946 bp · −
rps4 · PZ130066.1 · 46,199–46,804 bp · −
trnT-UGU · PZ130066.1 · 47,147–47,219 bp · −
ndhJ · PZ130066.1 · 49,455–49,931 bp · −
ndhK · PZ130066.1 · 50,040–50,717 bp · −
ndhC · PZ130066.1 · 50,770–51,132 bp · −
trnV-UAC · PZ130066.1 · 52,121–52,779 bp · −
atpE · PZ130066.1 · 53,241–53,642 bp · −
atpB · PZ130066.1 · 53,639–55,135 bp · −
psbJ · PZ130066.1 · 64,329–64,451 bp · −
psbL · PZ130066.1 · 64,585–64,701 bp · −
psbF · PZ130066.1 · 64,725–64,844 bp · −
psbE · PZ130066.1 · 64,859–65,110 bp · −
trnW-CCA · PZ130066.1 · 66,486–66,559 bp · −
trnP-UGG · PZ130066.1 · 66,730–66,803 bp · −
rpl20 · PZ130066.1 · 68,598–68,984 bp · −
rps12 · PZ130066.1 · 69,780–69,893 bp · −
rps12 · PZ130066.1 · 97,091–97,881 bp · −
clpP · PZ130066.1 · 70,035–71,970 bp · −
psbN · PZ130066.1 · 74,299–74,430 bp · −
rpoA · PZ130066.1 · 77,811–78,824 bp · −
rps11 · PZ130066.1 · 78,896–79,312 bp · −
rpl36 · PZ130066.1 · 79,414–79,527 bp · −
infA · PZ130066.1 · 79,623–79,856 bp · −
rps8 · PZ130066.1 · 79,980–80,390 bp · −
rpl14 · PZ130066.1 · 80,550–80,918 bp · −
rpl16 · PZ130066.1 · 81,045–82,275 bp · −
rps3 · PZ130066.1 · 82,430–83,092 bp · −
rpl22 · PZ130066.1 · 83,094–83,549 bp · −
rps19 · PZ130066.1 · 83,609–83,887 bp · −
rpl2 · PZ130066.1 · 83,942–85,424 bp · −
rpl23 · PZ130066.1 · 85,443–85,724 bp · −
trnI-CAU · PZ130066.1 · 85,884–85,957 bp · −
trnL-CAA · PZ130066.1 · 93,461–93,541 bp · −
ndhB · PZ130066.1 · 94,084–96,295 bp · −
rps7 · PZ130066.1 · 96,570–97,037 bp · −
trnN-GUU · PZ130066.1 · 107,915–107,986 bp · −
ndhF · PZ130066.1 · 109,063–111,303 bp · −
ndhD · PZ130066.1 · 113,822–115,351 bp · −
psaC · PZ130066.1 · 115,458–115,703 bp · −
ndhE · PZ130066.1 · 115,959–116,264 bp · −
ndhG · PZ130066.1 · 116,489–117,019 bp · −
ndhI · PZ130066.1 · 117,368–117,868 bp · −
ndhA · PZ130066.1 · 117,949–120,056 bp · −
ndhH · PZ130066.1 · 120,058–121,269 bp · −
rps15 · PZ130066.1 · 121,336–121,668 bp · −
ycf1 · PZ130066.1 · 121,879–127,533 bp · −
trnR-ACG · PZ130066.1 · 128,379–128,452 bp · −
rrn5 · PZ130066.1 · 128,687–128,807 bp · −
rrn4.5 · PZ130066.1 · 129,055–129,157 bp · −
rrn23 · PZ130066.1 · 129,256–132,067 bp · −
trnA-UGC · PZ130066.1 · 132,237–133,122 bp · −
trnI-GAU · PZ130066.1 · 133,187–134,207 bp · −
ycf68 · PZ130066.1 · 133,759–134,052 bp · −
rrn16 · PZ130066.1 · 134,506–135,996 bp · −
trnV-GAC · PZ130066.1 · 136,219–136,290 bp · −
ycf15 · PZ130066.1 · 142,538–142,735 bp · −
ycf2 · PZ130066.1 · 142,877–149,692 bp · −
psbK · PZ130066.1 · 7,857–8,042 bp · +
psbI · PZ130066.1 · 8,433–8,543 bp · +
trnG-UCC · PZ130066.1 · 9,427–10,180 bp · +
trnR-UCU · PZ130066.1 · 10,347–10,418 bp · +
trnC-GCA · PZ130066.1 · 28,556–28,626 bp · +
petN · PZ130066.1 · 29,356–29,445 bp · +
trnT-GGU · PZ130066.1 · 32,046–32,117 bp · +
psbD · PZ130066.1 · 33,429–34,490 bp · +
psbC · PZ130066.1 · 34,438–35,859 bp · +
psbZ · PZ130066.1 · 36,506–36,694 bp · +
trnG-GCC · PZ130066.1 · 36,966–37,036 bp · +
trnS-GGA · PZ130066.1 · 45,829–45,915 bp · +
trnL-UAA · PZ130066.1 · 47,865–48,431 bp · +
trnF-GAA · PZ130066.1 · 48,737–48,809 bp · +
trnM-CAU · PZ130066.1 · 52,960–53,032 bp · +
rbcL · PZ130066.1 · 55,883–57,346 bp · +
accD · PZ130066.1 · 58,079–59,569 bp · +
psaI · PZ130066.1 · 59,808–59,918 bp · +
ycf4 · PZ130066.1 · 60,352–60,906 bp · +
cemA · PZ130066.1 · 61,531–62,130 bp · +
petA · PZ130066.1 · 62,337–63,299 bp · +
petL · PZ130066.1 · 65,993–66,088 bp · +
petG · PZ130066.1 · 66,264–66,377 bp · +
psaJ · PZ130066.1 · 67,076–67,210 bp · +
rpl33 · PZ130066.1 · 67,677–67,877 bp · +
rps18 · PZ130066.1 · 68,052–68,357 bp · +
rps12 · PZ130066.1 · 137,857–138,647 bp · +
psbB · PZ130066.1 · 72,424–73,950 bp · +
psbT · PZ130066.1 · 74,131–74,238 bp · +
psbH · PZ130066.1 · 74,534–74,755 bp · +
petB · PZ130066.1 · 74,880–76,248 bp · +
petD · PZ130066.1 · 76,437–77,648 bp · +
ycf2 · PZ130066.1 · 86,046–92,861 bp · +
ycf15 · PZ130066.1 · 93,003–93,200 bp · +
trnV-GAC · PZ130066.1 · 99,448–99,519 bp · +
rrn16 · PZ130066.1 · 99,742–101,232 bp · +
trnI-GAU · PZ130066.1 · 101,531–102,551 bp · +
trnA-UGC · PZ130066.1 · 102,616–103,501 bp · +
rrn23 · PZ130066.1 · 103,671–106,482 bp · +
rrn4.5 · PZ130066.1 · 106,581–106,683 bp · +
rrn5 · PZ130066.1 · 106,931–107,051 bp · +
trnR-ACG · PZ130066.1 · 107,286–107,359 bp · +
rpl32 · PZ130066.1 · 111,819–111,995 bp · +
trnL-UAG · PZ130066.1 · 112,430–112,509 bp · +
ccsA · PZ130066.1 · 112,608–113,582 bp · +
trnN-GUU · PZ130066.1 · 127,752–127,823 bp · +
rps7 · PZ130066.1 · 138,701–139,168 bp · +
ndhB · PZ130066.1 · 139,443–141,654 bp · +
trnL-CAA · PZ130066.1 · 142,197–142,277 bp · +
trnI-CAU · PZ130066.1 · 149,781–149,854 bp · +
rpl23 · PZ130066.1 · 150,014–150,295 bp · +
rpl2 · PZ130066.1 · 150,314–151,796 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria holosericea
ANNOTATED PLASTOME
PZ130066.1
151,891 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37973 75946 113918 151891 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1677 4270 2594 Locate
matK gene − 1966 3510 1545 Locate
rps16 gene − 5179 6349 1171 Locate
trnQ-UUG gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8433 8543 111 Locate
trnS-GCU gene − 8648 8735 88 Locate
trnG-UCC gene + 9427 10180 754 Locate
trnR-UCU gene + 10347 10418 72 Locate
atpA gene − 10515 12038 1524 Locate
atpF gene − 12133 13350 1218 Locate
atpH gene − 13725 13970 246 Locate
atpI gene − 14964 15707 744 Locate
rps2 gene − 16055 16891 837 Locate
rpoC2 gene − 16982 21172 4191 Locate
rpoC1 gene − 21327 24155 2829 Locate
rpoB gene − 24182 27394 3213 Locate
trnC-GCA gene + 28556 28626 71 Locate
petN gene + 29356 29445 90 Locate
psbM gene − 30427 30540 114 Locate
trnD-GUC gene − 31072 31145 74 Locate
trnY-GUA gene − 31259 31342 84 Locate
trnE-UUC gene − 31402 31474 73 Locate
trnT-GGU gene + 32046 32117 72 Locate
psbD gene + 33429 34490 1062 Locate
psbC gene + 34438 35859 1422 Locate
trnS-UGA gene − 36095 36186 92 Locate
psbZ gene + 36506 36694 189 Locate
trnG-GCC gene + 36966 37036 71 Locate
trnfM-CAU gene − 37181 37254 74 Locate
rps14 gene − 37404 37706 303 Locate
psaB gene − 37834 40038 2205 Locate
psaA gene − 40064 42316 2253 Locate
ycf3 gene − 43021 44946 1926 Locate
trnS-GGA gene + 45829 45915 87 Locate
rps4 gene − 46199 46804 606 Locate
trnT-UGU gene − 47147 47219 73 Locate
trnL-UAA gene + 47865 48431 567 Locate
trnF-GAA gene + 48737 48809 73 Locate
ndhJ gene − 49455 49931 477 Locate
ndhK gene − 50040 50717 678 Locate
ndhC gene − 50770 51132 363 Locate
trnV-UAC gene − 52121 52779 659 Locate
trnM-CAU gene + 52960 53032 73 Locate
atpE gene − 53241 53642 402 Locate
atpB gene − 53639 55135 1497 Locate
rbcL gene + 55883 57346 1464 Locate
accD gene + 58079 59569 1491 Locate
psaI gene + 59808 59918 111 Locate
ycf4 gene + 60352 60906 555 Locate
cemA gene + 61531 62130 600 Locate
petA gene + 62337 63299 963 Locate
psbJ gene − 64329 64451 123 Locate
psbL gene − 64585 64701 117 Locate
psbF gene − 64725 64844 120 Locate
psbE gene − 64859 65110 252 Locate
petL gene + 65993 66088 96 Locate
petG gene + 66264 66377 114 Locate
trnW-CCA gene − 66486 66559 74 Locate
trnP-UGG gene − 66730 66803 74 Locate
psaJ gene + 67076 67210 135 Locate
rpl33 gene + 67677 67877 201 Locate
rps18 gene + 68052 68357 306 Locate
rpl20 gene − 68598 68984 387 Locate
rps12 gene − 69780 69893 114 Locate
clpP gene − 70035 71970 1936 Locate
psbB gene + 72424 73950 1527 Locate
psbT gene + 74131 74238 108 Locate
psbN gene − 74299 74430 132 Locate
psbH gene + 74534 74755 222 Locate
petB gene + 74880 76248 1369 Locate
petD gene + 76437 77648 1212 Locate
rpoA gene − 77811 78824 1014 Locate
rps11 gene − 78896 79312 417 Locate
rpl36 gene − 79414 79527 114 Locate
infA gene − 79623 79856 234 Locate
rps8 gene − 79980 80390 411 Locate
rpl14 gene − 80550 80918 369 Locate
rpl16 gene − 81045 82275 1231 Locate
rps3 gene − 82430 83092 663 Locate
rpl22 gene − 83094 83549 456 Locate
rps19 gene − 83609 83887 279 Locate
rpl2 gene − 83942 85424 1483 Locate
rpl23 gene − 85443 85724 282 Locate
trnI-CAU gene − 85884 85957 74 Locate
ycf2 gene + 86046 92861 6816 Locate
ycf15 gene + 93003 93200 198 Locate
trnL-CAA gene − 93461 93541 81 Locate
ndhB gene − 94084 96295 2212 Locate
rps7 gene − 96570 97037 468 Locate
rps12 gene − 97091 97881 791 Locate
trnV-GAC gene + 99448 99519 72 Locate
rrn16 gene + 99742 101232 1491 Locate
trnI-GAU gene + 101531 102551 1021 Locate
trnA-UGC gene + 102616 103501 886 Locate
rrn23 gene + 103671 106482 2812 Locate
rrn4.5 gene + 106581 106683 103 Locate
rrn5 gene + 106931 107051 121 Locate
trnR-ACG gene + 107286 107359 74 Locate
trnN-GUU gene − 107915 107986 72 Locate
ndhF gene − 109063 111303 2241 Locate
rpl32 gene + 111819 111995 177 Locate
trnL-UAG gene + 112430 112509 80 Locate
ccsA gene + 112608 113582 975 Locate
ndhD gene − 113822 115351 1530 Locate
psaC gene − 115458 115703 246 Locate
ndhE gene − 115959 116264 306 Locate
ndhG gene − 116489 117019 531 Locate
ndhI gene − 117368 117868 501 Locate
ndhA gene − 117949 120056 2108 Locate
ndhH gene − 120058 121269 1212 Locate
rps15 gene − 121336 121668 333 Locate
ycf1 gene − 121879 127533 5655 Locate
trnN-GUU gene + 127752 127823 72 Locate
trnR-ACG gene − 128379 128452 74 Locate
rrn5 gene − 128687 128807 121 Locate
rrn4.5 gene − 129055 129157 103 Locate
rrn23 gene − 129256 132067 2812 Locate
trnA-UGC gene − 132237 133122 886 Locate
trnI-GAU gene − 133187 134207 1021 Locate
ycf68 gene − 133759 134052 294 Locate
rrn16 gene − 134506 135996 1491 Locate
trnV-GAC gene − 136219 136290 72 Locate
rps12 gene + 137857 138647 791 Locate
rps7 gene + 138701 139168 468 Locate
ndhB gene + 139443 141654 2212 Locate
trnL-CAA gene + 142197 142277 81 Locate
ycf15 gene − 142538 142735 198 Locate
ycf2 gene − 142877 149692 6816 Locate
trnI-CAU gene + 149781 149854 74 Locate
rpl23 gene + 150014 150295 282 Locate
rpl2 gene + 150314 151796 1483 Locate
Status Available
Accession PZ130066.1
Length 151,891 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources