Scutellaria humilis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058251.1 · 2–75 bp · −
psbA · PQ058251.1 · 382–1,440 bp · −
trnK-UUU · PQ058251.1 · 1,681–4,274 bp · −
matK · PQ058251.1 · 1,976–3,511 bp · −
rps16 · PQ058251.1 · 5,176–6,347 bp · −
trnQ-UUG · PQ058251.1 · 7,467–7,538 bp · −
trnS-GCU · PQ058251.1 · 8,665–8,752 bp · −
atpA · PQ058251.1 · 10,537–12,060 bp · −
atpF · PQ058251.1 · 12,143–13,369 bp · −
atpH · PQ058251.1 · 13,731–13,976 bp · −
atpI · PQ058251.1 · 14,965–15,708 bp · −
rps2 · PQ058251.1 · 16,056–16,766 bp · −
rpoC2 · PQ058251.1 · 16,984–21,189 bp · −
rpoC1 · PQ058251.1 · 21,344–24,181 bp · −
rpoB · PQ058251.1 · 24,208–27,420 bp · −
psbM · PQ058251.1 · 30,485–30,589 bp · −
trnD-GUC · PQ058251.1 · 31,111–31,184 bp · −
trnY-GUA · PQ058251.1 · 31,298–31,381 bp · −
trnE-UUC · PQ058251.1 · 31,441–31,513 bp · −
trnS-UGA · PQ058251.1 · 36,150–36,241 bp · −
trnfM-CAU · PQ058251.1 · 37,235–37,308 bp · −
rps14 · PQ058251.1 · 37,458–37,760 bp · −
psaB · PQ058251.1 · 37,888–40,092 bp · −
psaA · PQ058251.1 · 40,118–42,370 bp · −
ycf3 · PQ058251.1 · 43,038–44,961 bp · −
rps4 · PQ058251.1 · 46,218–46,823 bp · −
trnT-UGU · PQ058251.1 · 47,164–47,236 bp · −
ndhJ · PQ058251.1 · 49,499–49,975 bp · −
ndhK · PQ058251.1 · 50,083–50,760 bp · −
ndhC · PQ058251.1 · 50,813–51,175 bp · −
trnV-UAC · PQ058251.1 · 52,164–52,816 bp · −
atpE · PQ058251.1 · 53,279–53,680 bp · −
atpB · PQ058251.1 · 53,677–55,164 bp · −
psbJ · PQ058251.1 · 64,899–65,021 bp · −
psbL · PQ058251.1 · 65,159–65,380 bp · −
psbF · PQ058251.1 · 65,299–65,418 bp · −
psbE · PQ058251.1 · 65,433–65,684 bp · −
trnW-CCA · PQ058251.1 · 67,099–67,172 bp · −
trnP-UGG · PQ058251.1 · 67,342–67,415 bp · −
rpl20 · PQ058251.1 · 69,219–69,605 bp · −
rps12 · PQ058251.1 · 70,403–70,516 bp · −
rps12 · PQ058251.1 · 97,735–98,525 bp · −
clpP · PQ058251.1 · 70,659–72,593 bp · −
psbN · PQ058251.1 · 74,961–75,092 bp · −
rpoA · PQ058251.1 · 78,460–79,473 bp · −
rps11 · PQ058251.1 · 79,545–79,961 bp · −
rpl36 · PQ058251.1 · 80,063–80,176 bp · −
infA · PQ058251.1 · 80,272–80,505 bp · −
rps8 · PQ058251.1 · 80,625–81,035 bp · −
rpl14 · PQ058251.1 · 81,196–81,564 bp · −
rpl16 · PQ058251.1 · 81,691–82,921 bp · −
rps3 · PQ058251.1 · 83,077–83,739 bp · −
rpl22 · PQ058251.1 · 83,741–84,196 bp · −
rps19 · PQ058251.1 · 84,263–84,541 bp · −
rpl2 · PQ058251.1 · 84,596–86,078 bp · −
rpl23 · PQ058251.1 · 86,097–86,378 bp · −
trnI-CAU · PQ058251.1 · 86,538–86,611 bp · −
trnL-CAA · PQ058251.1 · 94,104–94,184 bp · −
ndhB · PQ058251.1 · 94,728–96,939 bp · −
rps7 · PQ058251.1 · 97,214–97,681 bp · −
trnN-GUU · PQ058251.1 · 108,556–108,627 bp · −
ndhF · PQ058251.1 · 109,704–111,944 bp · −
ndhD · PQ058251.1 · 114,449–115,951 bp · −
psaC · PQ058251.1 · 116,071–116,316 bp · −
ndhE · PQ058251.1 · 116,573–116,878 bp · −
ndhG · PQ058251.1 · 117,109–117,639 bp · −
ndhI · PQ058251.1 · 118,005–118,505 bp · −
ndhA · PQ058251.1 · 118,586–120,675 bp · −
ndhH · PQ058251.1 · 120,677–121,888 bp · −
rps15 · PQ058251.1 · 121,961–122,233 bp · −
ycf1 · PQ058251.1 · 122,505–128,060 bp · −
trnR-ACG · PQ058251.1 · 128,897–128,970 bp · −
rrn5 · PQ058251.1 · 129,205–129,325 bp · −
rrn4.5 · PQ058251.1 · 129,573–129,675 bp · −
rrn23 · PQ058251.1 · 129,774–132,586 bp · −
trnA-UGC · PQ058251.1 · 132,749–133,630 bp · −
trnI-GAU · PQ058251.1 · 133,695–134,715 bp · −
ycf68 · PQ058251.1 · 134,321–134,560 bp · −
rrn16 · PQ058251.1 · 135,014–136,504 bp · −
trnV-GAC · PQ058251.1 · 136,732–136,803 bp · −
ycf15 · PQ058251.1 · 143,058–143,255 bp · −
ycf2 · PQ058251.1 · 143,397–150,206 bp · −
psbK · PQ058251.1 · 7,863–8,048 bp · +
psbI · PQ058251.1 · 8,436–8,546 bp · +
trnG-UCC · PQ058251.1 · 9,435–10,194 bp · +
trnR-UCU · PQ058251.1 · 10,369–10,440 bp · +
trnC-GCA · PQ058251.1 · 28,581–28,651 bp · +
petN · PQ058251.1 · 29,371–29,460 bp · +
trnT-GGU · PQ058251.1 · 32,096–32,167 bp · +
psbD · PQ058251.1 · 33,477–34,538 bp · +
psbC · PQ058251.1 · 34,486–35,907 bp · +
psbZ · PQ058251.1 · 36,561–36,749 bp · +
trnG-GCC · PQ058251.1 · 37,021–37,091 bp · +
trnS-GGA · PQ058251.1 · 45,846–45,932 bp · +
trnL-UAA · PQ058251.1 · 47,904–48,471 bp · +
trnF-GAA · PQ058251.1 · 48,777–48,849 bp · +
trnM-CAU · PQ058251.1 · 52,997–53,069 bp · +
rbcL · PQ058251.1 · 55,908–57,371 bp · +
accD · PQ058251.1 · 58,101–59,567 bp · +
psaI · PQ058251.1 · 60,269–60,379 bp · +
ycf4 · PQ058251.1 · 60,819–61,373 bp · +
cemA · PQ058251.1 · 62,115–62,714 bp · +
petA · PQ058251.1 · 62,921–63,883 bp · +
petL · PQ058251.1 · 66,593–66,688 bp · +
petG · PQ058251.1 · 66,867–66,980 bp · +
psaJ · PQ058251.1 · 67,688–67,822 bp · +
rpl33 · PQ058251.1 · 68,286–68,486 bp · +
rps18 · PQ058251.1 · 68,661–68,966 bp · +
rps12 · PQ058251.1 · 138,381–139,171 bp · +
psbB · PQ058251.1 · 73,067–74,593 bp · +
psbT · PQ058251.1 · 74,785–74,886 bp · +
psbH · PQ058251.1 · 75,196–75,417 bp · +
petB · PQ058251.1 · 75,542–76,907 bp · +
petD · PQ058251.1 · 77,096–78,297 bp · +
ycf2 · PQ058251.1 · 86,700–93,509 bp · +
ycf15 · PQ058251.1 · 93,651–93,848 bp · +
trnV-GAC · PQ058251.1 · 100,103–100,174 bp · +
rrn16 · PQ058251.1 · 100,402–101,892 bp · +
trnI-GAU · PQ058251.1 · 102,191–103,211 bp · +
trnA-UGC · PQ058251.1 · 103,276–104,157 bp · +
rrn23 · PQ058251.1 · 104,320–107,132 bp · +
rrn4.5 · PQ058251.1 · 107,231–107,333 bp · +
rrn5 · PQ058251.1 · 107,581–107,701 bp · +
trnR-ACG · PQ058251.1 · 107,936–108,009 bp · +
rpl32 · PQ058251.1 · 112,459–112,635 bp · +
trnL-UAG · PQ058251.1 · 113,068–113,147 bp · +
ccsA · PQ058251.1 · 113,242–114,216 bp · +
trnN-GUU · PQ058251.1 · 128,279–128,350 bp · +
rps7 · PQ058251.1 · 139,225–139,692 bp · +
ndhB · PQ058251.1 · 139,967–142,178 bp · +
trnL-CAA · PQ058251.1 · 142,722–142,802 bp · +
trnI-CAU · PQ058251.1 · 150,295–150,368 bp · +
rpl23 · PQ058251.1 · 150,528–150,809 bp · +
rpl2 · PQ058251.1 · 150,828–152,310 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria humilis
ANNOTATED PLASTOME
PQ058251.1
152,406 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38102 76203 114304 152406 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 382 1440 1059 Locate
trnK-UUU gene − 1681 4274 2594 Locate
matK gene − 1976 3511 1536 Locate
rps16 gene − 5176 6347 1172 Locate
trnQ-UUG gene − 7467 7538 72 Locate
psbK gene + 7863 8048 186 Locate
psbI gene + 8436 8546 111 Locate
trnS-GCU gene − 8665 8752 88 Locate
trnG-UCC gene + 9435 10194 760 Locate
trnR-UCU gene + 10369 10440 72 Locate
atpA gene − 10537 12060 1524 Locate
atpF gene − 12143 13369 1227 Locate
atpH gene − 13731 13976 246 Locate
atpI gene − 14965 15708 744 Locate
rps2 gene − 16056 16766 711 Locate
rpoC2 gene − 16984 21189 4206 Locate
rpoC1 gene − 21344 24181 2838 Locate
rpoB gene − 24208 27420 3213 Locate
trnC-GCA gene + 28581 28651 71 Locate
petN gene + 29371 29460 90 Locate
psbM gene − 30485 30589 105 Locate
trnD-GUC gene − 31111 31184 74 Locate
trnY-GUA gene − 31298 31381 84 Locate
trnE-UUC gene − 31441 31513 73 Locate
trnT-GGU gene + 32096 32167 72 Locate
psbD gene + 33477 34538 1062 Locate
psbC gene + 34486 35907 1422 Locate
trnS-UGA gene − 36150 36241 92 Locate
psbZ gene + 36561 36749 189 Locate
trnG-GCC gene + 37021 37091 71 Locate
trnfM-CAU gene − 37235 37308 74 Locate
rps14 gene − 37458 37760 303 Locate
psaB gene − 37888 40092 2205 Locate
psaA gene − 40118 42370 2253 Locate
ycf3 gene − 43038 44961 1924 Locate
trnS-GGA gene + 45846 45932 87 Locate
rps4 gene − 46218 46823 606 Locate
trnT-UGU gene − 47164 47236 73 Locate
trnL-UAA gene + 47904 48471 568 Locate
trnF-GAA gene + 48777 48849 73 Locate
ndhJ gene − 49499 49975 477 Locate
ndhK gene − 50083 50760 678 Locate
ndhC gene − 50813 51175 363 Locate
trnV-UAC gene − 52164 52816 653 Locate
trnM-CAU gene + 52997 53069 73 Locate
atpE gene − 53279 53680 402 Locate
atpB gene − 53677 55164 1488 Locate
rbcL gene + 55908 57371 1464 Locate
accD gene + 58101 59567 1467 Locate
psaI gene + 60269 60379 111 Locate
ycf4 gene + 60819 61373 555 Locate
cemA gene + 62115 62714 600 Locate
petA gene + 62921 63883 963 Locate
psbJ gene − 64899 65021 123 Locate
psbL gene − 65159 65380 222 Locate
psbF gene − 65299 65418 120 Locate
psbE gene − 65433 65684 252 Locate
petL gene + 66593 66688 96 Locate
petG gene + 66867 66980 114 Locate
trnW-CCA gene − 67099 67172 74 Locate
trnP-UGG gene − 67342 67415 74 Locate
psaJ gene + 67688 67822 135 Locate
rpl33 gene + 68286 68486 201 Locate
rps18 gene + 68661 68966 306 Locate
rpl20 gene − 69219 69605 387 Locate
rps12 gene − 70403 70516 114 Locate
clpP gene − 70659 72593 1935 Locate
psbB gene + 73067 74593 1527 Locate
psbT gene + 74785 74886 102 Locate
psbN gene − 74961 75092 132 Locate
psbH gene + 75196 75417 222 Locate
petB gene + 75542 76907 1366 Locate
petD gene + 77096 78297 1202 Locate
rpoA gene − 78460 79473 1014 Locate
rps11 gene − 79545 79961 417 Locate
rpl36 gene − 80063 80176 114 Locate
infA gene − 80272 80505 234 Locate
rps8 gene − 80625 81035 411 Locate
rpl14 gene − 81196 81564 369 Locate
rpl16 gene − 81691 82921 1231 Locate
rps3 gene − 83077 83739 663 Locate
rpl22 gene − 83741 84196 456 Locate
rps19 gene − 84263 84541 279 Locate
rpl2 gene − 84596 86078 1483 Locate
rpl23 gene − 86097 86378 282 Locate
trnI-CAU gene − 86538 86611 74 Locate
ycf2 gene + 86700 93509 6810 Locate
ycf15 gene + 93651 93848 198 Locate
trnL-CAA gene − 94104 94184 81 Locate
ndhB gene − 94728 96939 2212 Locate
rps7 gene − 97214 97681 468 Locate
rps12 gene − 97735 98525 791 Locate
trnV-GAC gene + 100103 100174 72 Locate
rrn16 gene + 100402 101892 1491 Locate
trnI-GAU gene + 102191 103211 1021 Locate
trnA-UGC gene + 103276 104157 882 Locate
rrn23 gene + 104320 107132 2813 Locate
rrn4.5 gene + 107231 107333 103 Locate
rrn5 gene + 107581 107701 121 Locate
trnR-ACG gene + 107936 108009 74 Locate
trnN-GUU gene − 108556 108627 72 Locate
ndhF gene − 109704 111944 2241 Locate
rpl32 gene + 112459 112635 177 Locate
trnL-UAG gene + 113068 113147 80 Locate
ccsA gene + 113242 114216 975 Locate
ndhD gene − 114449 115951 1503 Locate
psaC gene − 116071 116316 246 Locate
ndhE gene − 116573 116878 306 Locate
ndhG gene − 117109 117639 531 Locate
ndhI gene − 118005 118505 501 Locate
ndhA gene − 118586 120675 2090 Locate
ndhH gene − 120677 121888 1212 Locate
rps15 gene − 121961 122233 273 Locate
ycf1 gene − 122505 128060 5556 Locate
trnN-GUU gene + 128279 128350 72 Locate
trnR-ACG gene − 128897 128970 74 Locate
rrn5 gene − 129205 129325 121 Locate
rrn4.5 gene − 129573 129675 103 Locate
rrn23 gene − 129774 132586 2813 Locate
trnA-UGC gene − 132749 133630 882 Locate
trnI-GAU gene − 133695 134715 1021 Locate
ycf68 gene − 134321 134560 240 Locate
rrn16 gene − 135014 136504 1491 Locate
trnV-GAC gene − 136732 136803 72 Locate
rps12 gene + 138381 139171 791 Locate
rps7 gene + 139225 139692 468 Locate
ndhB gene + 139967 142178 2212 Locate
trnL-CAA gene + 142722 142802 81 Locate
ycf15 gene − 143058 143255 198 Locate
ycf2 gene − 143397 150206 6810 Locate
trnI-CAU gene + 150295 150368 74 Locate
rpl23 gene + 150528 150809 282 Locate
rpl2 gene + 150828 152310 1483 Locate
Status Available
Accession PQ058251.1
Length 152,406 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources