Scutellaria incana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420975.1 · 2–75 bp · −
psbA · MW420975.1 · 379–1,437 bp · −
trnK-UUU · MW420975.1 · 1,668–4,254 bp · −
matK · MW420975.1 · 1,965–3,500 bp · −
rps16 · MW420975.1 · 5,161–6,326 bp · −
trnQ-UUC · MW420975.1 · 7,419–7,490 bp · −
trnS-GCU · MW420975.1 · 8,611–8,698 bp · −
atpA · MW420975.1 · 10,482–12,005 bp · −
atpF · MW420975.1 · 12,078–13,311 bp · −
atpH · MW420975.1 · 13,674–13,919 bp · −
atpI · MW420975.1 · 14,909–15,652 bp · −
rps2 · MW420975.1 · 15,992–16,702 bp · −
rpoC2 · MW420975.1 · 16,932–21,125 bp · −
rpoC1 · MW420975.1 · 21,280–24,088 bp · −
rpoB · MW420975.1 · 24,115–27,327 bp · −
psbM · MW420975.1 · 30,356–30,460 bp · −
trnD-GUC · MW420975.1 · 30,990–31,063 bp · −
trnY-GUA · MW420975.1 · 31,183–31,266 bp · −
trnE-UUC · MW420975.1 · 31,326–31,398 bp · −
trnS-UCA · MW420975.1 · 36,014–36,106 bp · −
trnfM-CAU · MW420975.1 · 37,114–37,187 bp · −
rps14 · MW420975.1 · 37,337–37,639 bp · −
psaB · MW420975.1 · 37,767–39,971 bp · −
psaA · MW420975.1 · 39,996–42,248 bp · −
ycf3 · MW420975.1 · 42,944–44,855 bp · −
rps4 · MW420975.1 · 45,566–46,171 bp · −
trnT-UGU · MW420975.1 · 46,511–46,583 bp · −
ndhJ · MW420975.1 · 48,809–49,285 bp · −
ndhK · MW420975.1 · 49,393–50,070 bp · −
ndhC · MW420975.1 · 50,123–50,485 bp · −
trnV-UAC · MW420975.1 · 51,481–52,133 bp · −
atpE · MW420975.1 · 52,597–52,998 bp · −
atpB · MW420975.1 · 52,995–54,491 bp · −
pabJ · MW420975.1 · 64,228–64,350 bp · −
psbL · MW420975.1 · 64,485–64,601 bp · −
psbF · MW420975.1 · 64,625–64,744 bp · −
psbE · MW420975.1 · 64,759–65,010 bp · −
trnW-CCA · MW420975.1 · 66,421–66,494 bp · −
trnP-UGG · MW420975.1 · 66,658–66,731 bp · −
rpl20 · MW420975.1 · 68,521–68,907 bp · −
rps12 · MW420975.1 · 69,691–69,816 bp · −
rps12 · MW420975.1 · 96,991–97,781 bp · −
clpP · MW420975.1 · 69,958–71,886 bp · −
psbN · MW420975.1 · 74,232–74,363 bp · −
rpoA · MW420975.1 · 77,762–78,754 bp · −
rps11 · MW420975.1 · 78,826–79,242 bp · −
rpl36 · MW420975.1 · 79,344–79,457 bp · −
infA · MW420975.1 · 79,553–79,786 bp · −
rps8 · MW420975.1 · 79,907–80,317 bp · −
rpl14 · MW420975.1 · 80,476–80,844 bp · −
rpl16 · MW420975.1 · 80,971–82,195 bp · −
rps3 · MW420975.1 · 82,350–83,012 bp · −
rpl22 · MW420975.1 · 83,014–83,469 bp · −
rps19 · MW420975.1 · 83,534–83,812 bp · −
rpl2 · MW420975.1 · 83,869–85,351 bp · −
rpl23 · MW420975.1 · 85,370–85,651 bp · −
trnI-CAU · MW420975.1 · 85,811–85,884 bp · −
trnL-CAA · MW420975.1 · 93,370–93,450 bp · −
ndhB · MW420975.1 · 93,993–96,195 bp · −
rps7 · MW420975.1 · 96,470–96,937 bp · −
ndhF · MW420975.1 · 108,950–111,190 bp · −
ndhD · MW420975.1 · 113,706–115,226 bp · −
psaC · MW420975.1 · 115,335–115,580 bp · −
ndhE · MW420975.1 · 115,832–116,137 bp · −
ndhG · MW420975.1 · 116,368–116,898 bp · −
ndhI · MW420975.1 · 117,263–117,763 bp · −
ndhA · MW420975.1 · 117,844–119,941 bp · −
ndhH · MW420975.1 · 119,943–121,124 bp · −
rps15 · MW420975.1 · 121,221–121,493 bp · −
ycf1 · MW420975.1 · 121,767–127,202 bp · −
trnR-ACG · MW420975.1 · 128,151–128,224 bp · −
rrn5 · MW420975.1 · 128,449–128,569 bp · −
rrn4.5 · MW420975.1 · 128,817–128,919 bp · −
rrn23 · MW420975.1 · 129,018–131,830 bp · −
trnA-UGC · MW420975.1 · 131,993–132,881 bp · −
trnI-GAU · MW420975.1 · 132,947–133,966 bp · −
rrn16 · MW420975.1 · 134,265–135,755 bp · −
trnV-GAC · MW420975.1 · 135,983–136,054 bp · −
ycf15 · MW420975.1 · 142,296–142,445 bp · −
ycf2 · MW420975.1 · 142,635–149,432 bp · −
psbK · MW420975.1 · 7,823–8,008 bp · +
psbI · MW420975.1 · 8,391–8,501 bp · +
trnG-CGA · MW420975.1 · 9,372–10,133 bp · +
trnR-UCU · MW420975.1 · 10,308–10,379 bp · +
trnC-GCA · MW420975.1 · 28,484–28,554 bp · +
petN · MW420975.1 · 29,266–29,355 bp · +
trnT-GGU · MW420975.1 · 31,982–32,053 bp · +
psbD · MW420975.1 · 33,345–34,406 bp · +
psbC · MW420975.1 · 34,354–35,775 bp · +
psbZ · MW420975.1 · 36,426–36,614 bp · +
trnG-GCC · MW420975.1 · 36,890–36,960 bp · +
trnS-GGA · MW420975.1 · 45,196–45,282 bp · +
trnL-UAA · MW420975.1 · 47,216–47,780 bp · +
trnF-GAA · MW420975.1 · 48,085–48,157 bp · +
trnM-CAU · MW420975.1 · 52,314–52,386 bp · +
rbcL · MW420975.1 · 55,258–56,700 bp · +
accD · MW420975.1 · 57,412–58,890 bp · +
psaI · MW420975.1 · 59,585–59,695 bp · +
ycf4 · MW420975.1 · 60,122–60,676 bp · +
cemA · MW420975.1 · 61,357–62,016 bp · +
petA · MW420975.1 · 62,223–63,185 bp · +
petL · MW420975.1 · 65,918–66,013 bp · +
petG · MW420975.1 · 66,189–66,302 bp · +
psbJ · MW420975.1 · 67,000–67,134 bp · +
rpl33 · MW420975.1 · 67,606–67,806 bp · +
rps18 · MW420975.1 · 67,980–68,285 bp · +
rps12 · MW420975.1 · 137,624–138,414 bp · +
psbB · MW420975.1 · 72,338–73,864 bp · +
psbT · MW420975.1 · 74,057–74,158 bp · +
psbH · MW420975.1 · 74,467–74,688 bp · +
petB · MW420975.1 · 74,813–76,183 bp · +
petD · MW420975.1 · 76,372–77,577 bp · +
ycf2 · MW420975.1 · 85,973–92,770 bp · +
ycf15 · MW420975.1 · 92,960–93,109 bp · +
trnV-GAC · MW420975.1 · 99,351–99,422 bp · +
rrn16 · MW420975.1 · 99,650–101,140 bp · +
trnI-GAU · MW420975.1 · 101,439–102,458 bp · +
trnA-UGC · MW420975.1 · 102,524–103,412 bp · +
rrn23 · MW420975.1 · 103,575–106,387 bp · +
rrn4.5 · MW420975.1 · 106,486–106,588 bp · +
rrn5 · MW420975.1 · 106,836–106,956 bp · +
trnR-ACG · MW420975.1 · 107,181–107,254 bp · +
trnN-GUU · MW420975.1 · 107,802–107,873 bp · +
rpl32 · MW420975.1 · 111,712–111,888 bp · +
trnL-UAG · MW420975.1 · 112,324–112,403 bp · +
ccsA · MW420975.1 · 112,497–113,471 bp · +
trnN-GUU · MW420975.1 · 127,532–127,603 bp · +
rps7 · MW420975.1 · 138,468–138,935 bp · +
ndhB · MW420975.1 · 139,210–141,412 bp · +
trnL-CAA · MW420975.1 · 141,955–142,035 bp · +
trnI-CAU · MW420975.1 · 149,521–149,594 bp · +
rpl23 · MW420975.1 · 149,754–150,035 bp · +
rpl2 · MW420975.1 · 150,054–151,536 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria incana
ANNOTATED PLASTOME
MW420975.1
151,634 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37908 75817 113726 151634 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1668 4254 2587 Locate
matK gene − 1965 3500 1536 Locate
rps16 gene − 5161 6326 1166 Locate
trnQ-UUC gene − 7419 7490 72 Locate
psbK gene + 7823 8008 186 Locate
psbI gene + 8391 8501 111 Locate
trnS-GCU gene − 8611 8698 88 Locate
trnG-CGA gene + 9372 10133 762 Locate
trnR-UCU gene + 10308 10379 72 Locate
atpA gene − 10482 12005 1524 Locate
atpF gene − 12078 13311 1234 Locate
atpH gene − 13674 13919 246 Locate
atpI gene − 14909 15652 744 Locate
rps2 gene − 15992 16702 711 Locate
rpoC2 gene − 16932 21125 4194 Locate
rpoC1 gene − 21280 24088 2809 Locate
rpoB gene − 24115 27327 3213 Locate
trnC-GCA gene + 28484 28554 71 Locate
petN gene + 29266 29355 90 Locate
psbM gene − 30356 30460 105 Locate
trnD-GUC gene − 30990 31063 74 Locate
trnY-GUA gene − 31183 31266 84 Locate
trnE-UUC gene − 31326 31398 73 Locate
trnT-GGU gene + 31982 32053 72 Locate
psbD gene + 33345 34406 1062 Locate
psbC gene + 34354 35775 1422 Locate
trnS-UCA gene − 36014 36106 93 Locate
psbZ gene + 36426 36614 189 Locate
trnG-GCC gene + 36890 36960 71 Locate
trnfM-CAU gene − 37114 37187 74 Locate
rps14 gene − 37337 37639 303 Locate
psaB gene − 37767 39971 2205 Locate
psaA gene − 39996 42248 2253 Locate
ycf3 gene − 42944 44855 1912 Locate
trnS-GGA gene + 45196 45282 87 Locate
rps4 gene − 45566 46171 606 Locate
trnT-UGU gene − 46511 46583 73 Locate
trnL-UAA gene + 47216 47780 565 Locate
trnF-GAA gene + 48085 48157 73 Locate
ndhJ gene − 48809 49285 477 Locate
ndhK gene − 49393 50070 678 Locate
ndhC gene − 50123 50485 363 Locate
trnV-UAC gene − 51481 52133 653 Locate
trnM-CAU gene + 52314 52386 73 Locate
atpE gene − 52597 52998 402 Locate
atpB gene − 52995 54491 1497 Locate
rbcL gene + 55258 56700 1443 Locate
accD gene + 57412 58890 1479 Locate
psaI gene + 59585 59695 111 Locate
ycf4 gene + 60122 60676 555 Locate
cemA gene + 61357 62016 660 Locate
petA gene + 62223 63185 963 Locate
pabJ gene − 64228 64350 123 Locate
psbL gene − 64485 64601 117 Locate
psbF gene − 64625 64744 120 Locate
psbE gene − 64759 65010 252 Locate
petL gene + 65918 66013 96 Locate
petG gene + 66189 66302 114 Locate
trnW-CCA gene − 66421 66494 74 Locate
trnP-UGG gene − 66658 66731 74 Locate
psbJ gene + 67000 67134 135 Locate
rpl33 gene + 67606 67806 201 Locate
rps18 gene + 67980 68285 306 Locate
rpl20 gene − 68521 68907 387 Locate
rps12 gene − 69691 69816 126 Locate
clpP gene − 69958 71886 1929 Locate
psbB gene + 72338 73864 1527 Locate
psbT gene + 74057 74158 102 Locate
psbN gene − 74232 74363 132 Locate
psbH gene + 74467 74688 222 Locate
petB gene + 74813 76183 1371 Locate
petD gene + 76372 77577 1206 Locate
rpoA gene − 77762 78754 993 Locate
rps11 gene − 78826 79242 417 Locate
rpl36 gene − 79344 79457 114 Locate
infA gene − 79553 79786 234 Locate
rps8 gene − 79907 80317 411 Locate
rpl14 gene − 80476 80844 369 Locate
rpl16 gene − 80971 82195 1225 Locate
rps3 gene − 82350 83012 663 Locate
rpl22 gene − 83014 83469 456 Locate
rps19 gene − 83534 83812 279 Locate
rpl2 gene − 83869 85351 1483 Locate
rpl23 gene − 85370 85651 282 Locate
trnI-CAU gene − 85811 85884 74 Locate
ycf2 gene + 85973 92770 6798 Locate
ycf15 gene + 92960 93109 150 Locate
trnL-CAA gene − 93370 93450 81 Locate
ndhB gene − 93993 96195 2203 Locate
rps7 gene − 96470 96937 468 Locate
rps12 gene − 96991 97781 791 Locate
trnV-GAC gene + 99351 99422 72 Locate
rrn16 gene + 99650 101140 1491 Locate
trnI-GAU gene + 101439 102458 1020 Locate
trnA-UGC gene + 102524 103412 889 Locate
rrn23 gene + 103575 106387 2813 Locate
rrn4.5 gene + 106486 106588 103 Locate
rrn5 gene + 106836 106956 121 Locate
trnR-ACG gene + 107181 107254 74 Locate
trnN-GUU gene + 107802 107873 72 Locate
ndhF gene − 108950 111190 2241 Locate
rpl32 gene + 111712 111888 177 Locate
trnL-UAG gene + 112324 112403 80 Locate
ccsA gene + 112497 113471 975 Locate
ndhD gene − 113706 115226 1521 Locate
psaC gene − 115335 115580 246 Locate
ndhE gene − 115832 116137 306 Locate
ndhG gene − 116368 116898 531 Locate
ndhI gene − 117263 117763 501 Locate
ndhA gene − 117844 119941 2098 Locate
ndhH gene − 119943 121124 1182 Locate
rps15 gene − 121221 121493 273 Locate
ycf1 gene − 121767 127202 5436 Locate
trnN-GUU gene + 127532 127603 72 Locate
trnR-ACG gene − 128151 128224 74 Locate
rrn5 gene − 128449 128569 121 Locate
rrn4.5 gene − 128817 128919 103 Locate
rrn23 gene − 129018 131830 2813 Locate
trnA-UGC gene − 131993 132881 889 Locate
trnI-GAU gene − 132947 133966 1020 Locate
rrn16 gene − 134265 135755 1491 Locate
trnV-GAC gene − 135983 136054 72 Locate
rps12 gene + 137624 138414 791 Locate
rps7 gene + 138468 138935 468 Locate
ndhB gene + 139210 141412 2203 Locate
trnL-CAA gene + 141955 142035 81 Locate
ycf15 gene − 142296 142445 150 Locate
ycf2 gene − 142635 149432 6798 Locate
trnI-CAU gene + 149521 149594 74 Locate
rpl23 gene + 149754 150035 282 Locate
rpl2 gene + 150054 151536 1483 Locate
Status Available
Accession MW420975.1
Length 151,634 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources