Scutellaria indica var. elliptica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059294.1 · 3–76 bp · −
psbA · PQ059294.1 · 365–1,423 bp · −
trnK-UUU · PQ059294.1 · 1,657–4,245 bp · −
matK · PQ059294.1 · 1,952–3,487 bp · −
rps16 · PQ059294.1 · 5,119–6,283 bp · −
trnQ-UUG · PQ059294.1 · 7,322–7,393 bp · −
trnS-GCU · PQ059294.1 · 8,524–8,611 bp · −
atpA · PQ059294.1 · 10,390–11,913 bp · −
atpF · PQ059294.1 · 11,996–13,223 bp · −
atpH · PQ059294.1 · 13,579–13,824 bp · −
atpI · PQ059294.1 · 14,820–15,563 bp · −
rps2 · PQ059294.1 · 15,911–16,747 bp · −
rpoC2 · PQ059294.1 · 16,838–21,043 bp · −
rpoC1 · PQ059294.1 · 21,198–24,026 bp · −
rpoB · PQ059294.1 · 24,053–27,265 bp · −
psbM · PQ059294.1 · 30,301–30,405 bp · −
trnD-GUC · PQ059294.1 · 30,932–31,005 bp · −
trnY-GUA · PQ059294.1 · 31,119–31,202 bp · −
trnE-UUC · PQ059294.1 · 31,262–31,334 bp · −
trnS-UGA · PQ059294.1 · 35,954–36,045 bp · −
trnfM-CAU · PQ059294.1 · 37,049–37,122 bp · −
rps14 · PQ059294.1 · 37,272–37,574 bp · −
psaB · PQ059294.1 · 37,702–39,906 bp · −
psaA · PQ059294.1 · 39,932–42,184 bp · −
ycf3 · PQ059294.1 · 42,853–44,776 bp · −
rps4 · PQ059294.1 · 46,033–46,638 bp · −
trnT-UGU · PQ059294.1 · 46,968–47,040 bp · −
ndhJ · PQ059294.1 · 49,315–49,791 bp · −
ndhK · PQ059294.1 · 49,899–50,576 bp · −
ndhC · PQ059294.1 · 50,629–50,991 bp · −
trnV-UAC · PQ059294.1 · 51,847–52,499 bp · −
atpE · PQ059294.1 · 52,968–53,369 bp · −
atpB · PQ059294.1 · 53,366–54,853 bp · −
psbJ · PQ059294.1 · 64,455–64,577 bp · −
psbL · PQ059294.1 · 64,711–64,932 bp · −
psbF · PQ059294.1 · 64,851–64,970 bp · −
psbE · PQ059294.1 · 64,985–65,236 bp · −
trnW-CCA · PQ059294.1 · 66,648–66,721 bp · −
trnP-UGG · PQ059294.1 · 66,891–66,964 bp · −
rpl20 · PQ059294.1 · 68,763–69,149 bp · −
rps12 · PQ059294.1 · 69,938–70,063 bp · −
rps12 · PQ059294.1 · 97,268–98,058 bp · −
clpP · PQ059294.1 · 70,198–72,130 bp · −
psbN · PQ059294.1 · 74,490–74,621 bp · −
rpoA · PQ059294.1 · 77,991–79,004 bp · −
rps11 · PQ059294.1 · 79,076–79,492 bp · −
rpl36 · PQ059294.1 · 79,594–79,707 bp · −
infA · PQ059294.1 · 79,803–80,036 bp · −
rps8 · PQ059294.1 · 80,156–80,566 bp · −
rpl14 · PQ059294.1 · 80,735–81,103 bp · −
rpl16 · PQ059294.1 · 81,230–82,463 bp · −
rps3 · PQ059294.1 · 82,618–83,280 bp · −
rpl22 · PQ059294.1 · 83,282–83,737 bp · −
rps19 · PQ059294.1 · 83,797–84,075 bp · −
rpl2 · PQ059294.1 · 84,130–85,612 bp · −
rpl23 · PQ059294.1 · 85,631–85,912 bp · −
trnI-CAU · PQ059294.1 · 86,072–86,145 bp · −
trnL-CAA · PQ059294.1 · 93,638–93,718 bp · −
ndhB · PQ059294.1 · 94,261–96,418 bp · −
rps7 · PQ059294.1 · 96,747–97,214 bp · −
trnN-GUU · PQ059294.1 · 108,099–108,170 bp · −
ndhF · PQ059294.1 · 109,247–111,487 bp · −
ndhD · PQ059294.1 · 114,012–115,514 bp · −
psaC · PQ059294.1 · 115,634–115,879 bp · −
ndhE · PQ059294.1 · 116,136–116,441 bp · −
ndhG · PQ059294.1 · 116,672–117,202 bp · −
ndhI · PQ059294.1 · 117,567–118,067 bp · −
ndhA · PQ059294.1 · 118,148–120,239 bp · −
ndhH · PQ059294.1 · 120,241–121,452 bp · −
rps15 · PQ059294.1 · 121,525–121,797 bp · −
ycf1 · PQ059294.1 · 122,056–127,701 bp · −
trnR-ACG · PQ059294.1 · 128,538–128,611 bp · −
rrn5 · PQ059294.1 · 128,846–128,966 bp · −
rrn4.5 · PQ059294.1 · 129,214–129,316 bp · −
rrn23 · PQ059294.1 · 129,415–132,227 bp · −
trnA-UGC · PQ059294.1 · 132,397–133,281 bp · −
trnI-GAU · PQ059294.1 · 133,346–134,366 bp · −
ycf68 · PQ059294.1 · 133,972–134,211 bp · −
rrn16 · PQ059294.1 · 134,665–136,155 bp · −
trnV-GAC · PQ059294.1 · 136,383–136,454 bp · −
ycf15 · PQ059294.1 · 142,708–142,956 bp · −
ycf2 · PQ059294.1 · 143,047–149,856 bp · −
psbK · PQ059294.1 · 7,718–7,903 bp · +
psbI · PQ059294.1 · 8,295–8,405 bp · +
trnG-UCC · PQ059294.1 · 9,291–10,051 bp · +
trnR-UCU · PQ059294.1 · 10,222–10,293 bp · +
trnC-GCA · PQ059294.1 · 28,436–28,506 bp · +
petN · PQ059294.1 · 29,219–29,308 bp · +
trnT-GGU · PQ059294.1 · 31,910–31,981 bp · +
psbD · PQ059294.1 · 33,288–34,349 bp · +
psbC · PQ059294.1 · 34,297–35,718 bp · +
psbZ · PQ059294.1 · 36,365–36,553 bp · +
trnG-GCC · PQ059294.1 · 36,825–36,895 bp · +
trnS-GGA · PQ059294.1 · 45,661–45,747 bp · +
trnL-UAA · PQ059294.1 · 47,726–48,287 bp · +
trnF-GAA · PQ059294.1 · 48,594–48,666 bp · +
trnM-CAU · PQ059294.1 · 52,680–52,752 bp · +
rbcL · PQ059294.1 · 55,603–57,066 bp · +
accD · PQ059294.1 · 57,793–59,259 bp · +
psaI · PQ059294.1 · 59,817–59,927 bp · +
ycf4 · PQ059294.1 · 60,361–60,915 bp · +
cemA · PQ059294.1 · 61,653–62,252 bp · +
petA · PQ059294.1 · 62,459–63,421 bp · +
petL · PQ059294.1 · 66,145–66,240 bp · +
petG · PQ059294.1 · 66,416–66,529 bp · +
psaJ · PQ059294.1 · 67,237–67,371 bp · +
rpl33 · PQ059294.1 · 67,845–68,045 bp · +
rps18 · PQ059294.1 · 68,221–68,526 bp · +
rps12 · PQ059294.1 · 138,032–138,822 bp · +
psbB · PQ059294.1 · 72,597–74,123 bp · +
psbT · PQ059294.1 · 74,315–74,416 bp · +
psbH · PQ059294.1 · 74,725–74,946 bp · +
petB · PQ059294.1 · 75,071–76,438 bp · +
petD · PQ059294.1 · 76,627–77,828 bp · +
ycf2 · PQ059294.1 · 86,234–93,043 bp · +
ycf15 · PQ059294.1 · 93,134–93,382 bp · +
trnV-GAC · PQ059294.1 · 99,636–99,707 bp · +
rrn16 · PQ059294.1 · 99,935–101,425 bp · +
trnI-GAU · PQ059294.1 · 101,724–102,744 bp · +
trnA-UGC · PQ059294.1 · 102,809–103,693 bp · +
rrn23 · PQ059294.1 · 103,863–106,675 bp · +
rrn4.5 · PQ059294.1 · 106,774–106,876 bp · +
rrn5 · PQ059294.1 · 107,124–107,244 bp · +
trnR-ACG · PQ059294.1 · 107,479–107,552 bp · +
rpl32 · PQ059294.1 · 112,008–112,184 bp · +
trnL-UAG · PQ059294.1 · 112,629–112,708 bp · +
ccsA · PQ059294.1 · 112,805–113,779 bp · +
trnN-GUU · PQ059294.1 · 127,920–127,991 bp · +
rps7 · PQ059294.1 · 138,876–139,343 bp · +
ndhB · PQ059294.1 · 139,672–141,829 bp · +
trnL-CAA · PQ059294.1 · 142,372–142,452 bp · +
trnI-CAU · PQ059294.1 · 149,945–150,018 bp · +
rpl23 · PQ059294.1 · 150,178–150,459 bp · +
rpl2 · PQ059294.1 · 150,478–151,960 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria indica var. elliptica
ANNOTATED PLASTOME
PQ059294.1
152,055 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38014 76028 114041 152055 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1657 4245 2589 Locate
matK gene − 1952 3487 1536 Locate
rps16 gene − 5119 6283 1165 Locate
trnQ-UUG gene − 7322 7393 72 Locate
psbK gene + 7718 7903 186 Locate
psbI gene + 8295 8405 111 Locate
trnS-GCU gene − 8524 8611 88 Locate
trnG-UCC gene + 9291 10051 761 Locate
trnR-UCU gene + 10222 10293 72 Locate
atpA gene − 10390 11913 1524 Locate
atpF gene − 11996 13223 1228 Locate
atpH gene − 13579 13824 246 Locate
atpI gene − 14820 15563 744 Locate
rps2 gene − 15911 16747 837 Locate
rpoC2 gene − 16838 21043 4206 Locate
rpoC1 gene − 21198 24026 2829 Locate
rpoB gene − 24053 27265 3213 Locate
trnC-GCA gene + 28436 28506 71 Locate
petN gene + 29219 29308 90 Locate
psbM gene − 30301 30405 105 Locate
trnD-GUC gene − 30932 31005 74 Locate
trnY-GUA gene − 31119 31202 84 Locate
trnE-UUC gene − 31262 31334 73 Locate
trnT-GGU gene + 31910 31981 72 Locate
psbD gene + 33288 34349 1062 Locate
psbC gene + 34297 35718 1422 Locate
trnS-UGA gene − 35954 36045 92 Locate
psbZ gene + 36365 36553 189 Locate
trnG-GCC gene + 36825 36895 71 Locate
trnfM-CAU gene − 37049 37122 74 Locate
rps14 gene − 37272 37574 303 Locate
psaB gene − 37702 39906 2205 Locate
psaA gene − 39932 42184 2253 Locate
ycf3 gene − 42853 44776 1924 Locate
trnS-GGA gene + 45661 45747 87 Locate
rps4 gene − 46033 46638 606 Locate
trnT-UGU gene − 46968 47040 73 Locate
trnL-UAA gene + 47726 48287 562 Locate
trnF-GAA gene + 48594 48666 73 Locate
ndhJ gene − 49315 49791 477 Locate
ndhK gene − 49899 50576 678 Locate
ndhC gene − 50629 50991 363 Locate
trnV-UAC gene − 51847 52499 653 Locate
trnM-CAU gene + 52680 52752 73 Locate
atpE gene − 52968 53369 402 Locate
atpB gene − 53366 54853 1488 Locate
rbcL gene + 55603 57066 1464 Locate
accD gene + 57793 59259 1467 Locate
psaI gene + 59817 59927 111 Locate
ycf4 gene + 60361 60915 555 Locate
cemA gene + 61653 62252 600 Locate
petA gene + 62459 63421 963 Locate
psbJ gene − 64455 64577 123 Locate
psbL gene − 64711 64932 222 Locate
psbF gene − 64851 64970 120 Locate
psbE gene − 64985 65236 252 Locate
petL gene + 66145 66240 96 Locate
petG gene + 66416 66529 114 Locate
trnW-CCA gene − 66648 66721 74 Locate
trnP-UGG gene − 66891 66964 74 Locate
psaJ gene + 67237 67371 135 Locate
rpl33 gene + 67845 68045 201 Locate
rps18 gene + 68221 68526 306 Locate
rpl20 gene − 68763 69149 387 Locate
rps12 gene − 69938 70063 126 Locate
clpP gene − 70198 72130 1933 Locate
psbB gene + 72597 74123 1527 Locate
psbT gene + 74315 74416 102 Locate
psbN gene − 74490 74621 132 Locate
psbH gene + 74725 74946 222 Locate
petB gene + 75071 76438 1368 Locate
petD gene + 76627 77828 1202 Locate
rpoA gene − 77991 79004 1014 Locate
rps11 gene − 79076 79492 417 Locate
rpl36 gene − 79594 79707 114 Locate
infA gene − 79803 80036 234 Locate
rps8 gene − 80156 80566 411 Locate
rpl14 gene − 80735 81103 369 Locate
rpl16 gene − 81230 82463 1234 Locate
rps3 gene − 82618 83280 663 Locate
rpl22 gene − 83282 83737 456 Locate
rps19 gene − 83797 84075 279 Locate
rpl2 gene − 84130 85612 1483 Locate
rpl23 gene − 85631 85912 282 Locate
trnI-CAU gene − 86072 86145 74 Locate
ycf2 gene + 86234 93043 6810 Locate
ycf15 gene + 93134 93382 249 Locate
trnL-CAA gene − 93638 93718 81 Locate
ndhB gene − 94261 96418 2158 Locate
rps7 gene − 96747 97214 468 Locate
rps12 gene − 97268 98058 791 Locate
trnV-GAC gene + 99636 99707 72 Locate
rrn16 gene + 99935 101425 1491 Locate
trnI-GAU gene + 101724 102744 1021 Locate
trnA-UGC gene + 102809 103693 885 Locate
rrn23 gene + 103863 106675 2813 Locate
rrn4.5 gene + 106774 106876 103 Locate
rrn5 gene + 107124 107244 121 Locate
trnR-ACG gene + 107479 107552 74 Locate
trnN-GUU gene − 108099 108170 72 Locate
ndhF gene − 109247 111487 2241 Locate
rpl32 gene + 112008 112184 177 Locate
trnL-UAG gene + 112629 112708 80 Locate
ccsA gene + 112805 113779 975 Locate
ndhD gene − 114012 115514 1503 Locate
psaC gene − 115634 115879 246 Locate
ndhE gene − 116136 116441 306 Locate
ndhG gene − 116672 117202 531 Locate
ndhI gene − 117567 118067 501 Locate
ndhA gene − 118148 120239 2092 Locate
ndhH gene − 120241 121452 1212 Locate
rps15 gene − 121525 121797 273 Locate
ycf1 gene − 122056 127701 5646 Locate
trnN-GUU gene + 127920 127991 72 Locate
trnR-ACG gene − 128538 128611 74 Locate
rrn5 gene − 128846 128966 121 Locate
rrn4.5 gene − 129214 129316 103 Locate
rrn23 gene − 129415 132227 2813 Locate
trnA-UGC gene − 132397 133281 885 Locate
trnI-GAU gene − 133346 134366 1021 Locate
ycf68 gene − 133972 134211 240 Locate
rrn16 gene − 134665 136155 1491 Locate
trnV-GAC gene − 136383 136454 72 Locate
rps12 gene + 138032 138822 791 Locate
rps7 gene + 138876 139343 468 Locate
ndhB gene + 139672 141829 2158 Locate
trnL-CAA gene + 142372 142452 81 Locate
ycf15 gene − 142708 142956 249 Locate
ycf2 gene − 143047 149856 6810 Locate
trnI-CAU gene + 149945 150018 74 Locate
rpl23 gene + 150178 150459 282 Locate
rpl2 gene + 150478 151960 1483 Locate
Status Available
Accession PQ059294.1
Length 152,055 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources