Coordinate-aware organelle record

Scutellaria indica var. elliptica chloroplast genome

Available PQ059294.1 152,055 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	364	1423	1059
trnK-UUU	gene	translation-rna	−	1656	4245	2589
matK	gene	other	−	1951	3487	1536
rps16	gene	ribosomal-protein	−	5118	6283	1165
trnQ-UUG	gene	translation-rna	−	7321	7393	72
psbK	gene	photosystem-ii	+	7717	7903	186
psbI	gene	photosystem-ii	+	8294	8405	111
trnS-GCU	gene	translation-rna	−	8523	8611	88
trnG-UCC	gene	translation-rna	+	9290	10051	761
trnR-UCU	gene	translation-rna	+	10221	10293	72
atpA	gene	atp-synthase	−	10389	11913	1524
atpF	gene	atp-synthase	−	11995	13223	1228
atpH	gene	atp-synthase	−	13578	13824	246
atpI	gene	atp-synthase	−	14819	15563	744
rps2	gene	ribosomal-protein	−	15910	16747	837
rpoC2	gene	rna-polymerase	−	16837	21043	4206
rpoC1	gene	rna-polymerase	−	21197	24026	2829
rpoB	gene	rna-polymerase	−	24052	27265	3213
trnC-GCA	gene	translation-rna	+	28435	28506	71
petN	gene	cytochrome	+	29218	29308	90
psbM	gene	photosystem-ii	−	30300	30405	105
trnD-GUC	gene	translation-rna	−	30931	31005	74
trnY-GUA	gene	translation-rna	−	31118	31202	84
trnE-UUC	gene	translation-rna	−	31261	31334	73
trnT-GGU	gene	translation-rna	+	31909	31981	72
psbD	gene	photosystem-ii	+	33287	34349	1062
psbC	gene	photosystem-ii	+	34296	35718	1422
trnS-UGA	gene	translation-rna	−	35953	36045	92
psbZ	gene	photosystem-ii	+	36364	36553	189
trnG-GCC	gene	translation-rna	+	36824	36895	71
trnfM-CAU	gene	translation-rna	−	37048	37122	74
rps14	gene	ribosomal-protein	−	37271	37574	303
psaB	gene	photosystem-i	−	37701	39906	2205
psaA	gene	photosystem-i	−	39931	42184	2253
ycf3	gene	other	−	42852	44776	1924
trnS-GGA	gene	translation-rna	+	45660	45747	87
rps4	gene	ribosomal-protein	−	46032	46638	606
trnT-UGU	gene	translation-rna	−	46967	47040	73
trnL-UAA	gene	translation-rna	+	47725	48287	562
trnF-GAA	gene	translation-rna	+	48593	48666	73
ndhJ	gene	nad-dehydrogenase	−	49314	49791	477
ndhK	gene	nad-dehydrogenase	−	49898	50576	678
ndhC	gene	nad-dehydrogenase	−	50628	50991	363
trnV-UAC	gene	translation-rna	−	51846	52499	653
trnM-CAU	gene	translation-rna	+	52679	52752	73
atpE	gene	atp-synthase	−	52967	53369	402
atpB	gene	atp-synthase	−	53365	54853	1488
rbcL	gene	other	+	55602	57066	1464
accD	gene	other	+	57792	59259	1467
psaI	gene	photosystem-i	+	59816	59927	111
ycf4	gene	other	+	60360	60915	555
cemA	gene	other	+	61652	62252	600
petA	gene	cytochrome	+	62458	63421	963
psbJ	gene	photosystem-ii	−	64454	64577	123
psbL	gene	photosystem-ii	−	64710	64932	222
psbF	gene	photosystem-ii	−	64850	64970	120
psbE	gene	photosystem-ii	−	64984	65236	252
petL	gene	cytochrome	+	66144	66240	96
petG	gene	cytochrome	+	66415	66529	114
trnW-CCA	gene	translation-rna	−	66647	66721	74
trnP-UGG	gene	translation-rna	−	66890	66964	74
psaJ	gene	photosystem-i	+	67236	67371	135
rpl33	gene	ribosomal-protein	+	67844	68045	201
rps18	gene	ribosomal-protein	+	68220	68526	306
rpl20	gene	ribosomal-protein	−	68762	69149	387
rps12	gene	ribosomal-protein	−	69937	98058	28121
rps12	gene	ribosomal-protein	+	69937	138822	68885
clpP	gene	other	−	70197	72130	1933
psbB	gene	photosystem-ii	+	72596	74123	1527
psbT	gene	photosystem-ii	+	74314	74416	102
psbN	gene	photosystem-ii	−	74489	74621	132
psbH	gene	photosystem-ii	+	74724	74946	222
petB	gene	cytochrome	+	75070	76438	1368
petD	gene	cytochrome	+	76626	77828	1202
rpoA	gene	rna-polymerase	−	77990	79004	1014
rps11	gene	ribosomal-protein	−	79075	79492	417
rpl36	gene	ribosomal-protein	−	79593	79707	114
infA	gene	other	−	79802	80036	234
rps8	gene	ribosomal-protein	−	80155	80566	411
rpl14	gene	ribosomal-protein	−	80734	81103	369
rpl16	gene	ribosomal-protein	−	81229	82463	1234
rps3	gene	ribosomal-protein	−	82617	83280	663
rpl22	gene	ribosomal-protein	−	83281	83737	456
rps19	gene	ribosomal-protein	−	83796	84075	279
rpl2	gene	ribosomal-protein	−	84129	85612	1483
rpl23	gene	ribosomal-protein	−	85630	85912	282
trnI-CAU	gene	translation-rna	−	86071	86145	74
ycf2	gene	other	+	86233	93043	6810
ycf15	gene	other	+	93133	93382	249
trnL-CAA	gene	translation-rna	−	93637	93718	81
ndhB	gene	nad-dehydrogenase	−	94260	96418	2158
rps7	gene	ribosomal-protein	−	96746	97214	468
trnV-GAC	gene	translation-rna	+	99635	99707	72
rrn16	gene	ribosomal-rna	+	99934	101425	1491
trnI-GAU	gene	translation-rna	+	101723	102744	1021
trnA-UGC	gene	translation-rna	+	102808	103693	885
rrn23	gene	ribosomal-rna	+	103862	106675	2813
rrn4.5	gene	ribosomal-rna	+	106773	106876	103
rrn5	gene	ribosomal-rna	+	107123	107244	121
trnR-ACG	gene	translation-rna	+	107478	107552	74
trnN-GUU	gene	translation-rna	−	108098	108170	72
ndhF	gene	nad-dehydrogenase	−	109246	111487	2241
rpl32	gene	ribosomal-protein	+	112007	112184	177
trnL-UAG	gene	translation-rna	+	112628	112708	80
ccsA	gene	other	+	112804	113779	975
ndhD	gene	nad-dehydrogenase	−	114011	115514	1503
psaC	gene	photosystem-i	−	115633	115879	246
ndhE	gene	nad-dehydrogenase	−	116135	116441	306
ndhG	gene	nad-dehydrogenase	−	116671	117202	531
ndhI	gene	nad-dehydrogenase	−	117566	118067	501
ndhA	gene	nad-dehydrogenase	−	118147	120239	2092
ndhH	gene	nad-dehydrogenase	−	120240	121452	1212
rps15	gene	ribosomal-protein	−	121524	121797	273
ycf1	gene	other	−	122055	127701	5646
trnN-GUU	gene	translation-rna	+	127919	127991	72
trnR-ACG	gene	translation-rna	−	128537	128611	74
rrn5	gene	ribosomal-rna	−	128845	128966	121
rrn4.5	gene	ribosomal-rna	−	129213	129316	103
rrn23	gene	ribosomal-rna	−	129414	132227	2813
trnA-UGC	gene	translation-rna	−	132396	133281	885
trnI-GAU	gene	translation-rna	−	133345	134366	1021
ycf68	gene	other	−	133971	134211	240
rrn16	gene	ribosomal-rna	−	134664	136155	1491
trnV-GAC	gene	translation-rna	−	136382	136454	72
rps7	gene	ribosomal-protein	+	138875	139343	468
ndhB	gene	nad-dehydrogenase	+	139671	141829	2158
trnL-CAA	gene	translation-rna	+	142371	142452	81
ycf15	gene	other	−	142707	142956	249
ycf2	gene	other	−	143046	149856	6810
trnI-CAU	gene	translation-rna	+	149944	150018	74
rpl23	gene	ribosomal-protein	+	150177	150459	282
rpl2	gene	ribosomal-protein	+	150477	151960	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomePQ059294.1DNA · accDPQ059294DNA · atpBPQ059294DNA · matKPQ059294DNA · ndhFPQ059294DNA · psbAPQ059294DNA · rbcLPQ059294DNA · rps12PQ059294DNA · ycf1PQ059294