Scutellaria indica var. parvifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059312.1 · 3–76 bp · −
psbA · PQ059312.1 · 375–1,433 bp · −
trnK-UUU · PQ059312.1 · 1,675–4,254 bp · −
matK · PQ059312.1 · 1,970–3,496 bp · −
rps16 · PQ059312.1 · 5,127–6,296 bp · −
trnQ-UUG · PQ059312.1 · 7,326–7,397 bp · −
trnS-GCU · PQ059312.1 · 8,525–8,612 bp · −
atpA · PQ059312.1 · 10,396–11,919 bp · −
atpF · PQ059312.1 · 12,002–13,236 bp · −
atpH · PQ059312.1 · 13,593–13,838 bp · −
atpI · PQ059312.1 · 14,834–15,577 bp · −
rps2 · PQ059312.1 · 15,926–16,762 bp · −
rpoC2 · PQ059312.1 · 16,853–21,058 bp · −
rpoC1 · PQ059312.1 · 21,213–24,042 bp · −
rpoB · PQ059312.1 · 24,069–27,281 bp · −
psbM · PQ059312.1 · 30,284–30,388 bp · −
trnD-GUC · PQ059312.1 · 30,910–30,983 bp · −
trnY-GUA · PQ059312.1 · 31,097–31,180 bp · −
trnE-UUC · PQ059312.1 · 31,240–31,312 bp · −
trnS-UGA · PQ059312.1 · 35,830–35,921 bp · −
trnfM-CAU · PQ059312.1 · 36,926–36,999 bp · −
rps14 · PQ059312.1 · 37,149–37,451 bp · −
psaB · PQ059312.1 · 37,579–39,783 bp · −
psaA · PQ059312.1 · 39,809–42,061 bp · −
ycf3 · PQ059312.1 · 42,737–44,658 bp · −
rps4 · PQ059312.1 · 45,917–46,522 bp · −
trnT-UGU · PQ059312.1 · 46,864–46,936 bp · −
ndhJ · PQ059312.1 · 49,209–49,685 bp · −
ndhK · PQ059312.1 · 49,785–50,462 bp · −
ndhC · PQ059312.1 · 50,515–50,877 bp · −
trnV-UAC · PQ059312.1 · 51,725–52,377 bp · −
atpE · PQ059312.1 · 52,846–53,247 bp · −
atpB · PQ059312.1 · 53,244–54,731 bp · −
psbJ · PQ059312.1 · 64,328–64,450 bp · −
psbL · PQ059312.1 · 64,584–64,700 bp · −
psbF · PQ059312.1 · 64,724–64,843 bp · −
psbE · PQ059312.1 · 64,858–65,109 bp · −
trnW-CCA · PQ059312.1 · 66,521–66,594 bp · −
trnP-UGG · PQ059312.1 · 66,764–66,837 bp · −
rpl20 · PQ059312.1 · 68,635–69,021 bp · −
rps12 · PQ059312.1 · 69,821–69,934 bp · −
rps12 · PQ059312.1 · 97,137–97,927 bp · −
clpP · PQ059312.1 · 70,077–72,009 bp · −
psbN · PQ059312.1 · 74,369–74,500 bp · −
rpoA · PQ059312.1 · 77,870–78,883 bp · −
rps11 · PQ059312.1 · 78,955–79,371 bp · −
rpl36 · PQ059312.1 · 79,473–79,586 bp · −
infA · PQ059312.1 · 79,682–79,915 bp · −
rps8 · PQ059312.1 · 80,036–80,446 bp · −
rpl14 · PQ059312.1 · 80,615–80,983 bp · −
rpl16 · PQ059312.1 · 81,110–82,332 bp · −
rps3 · PQ059312.1 · 82,487–83,149 bp · −
rpl22 · PQ059312.1 · 83,151–83,606 bp · −
rps19 · PQ059312.1 · 83,666–83,944 bp · −
rpl2 · PQ059312.1 · 83,999–85,481 bp · −
rpl23 · PQ059312.1 · 85,500–85,781 bp · −
trnI-CAU · PQ059312.1 · 85,941–86,014 bp · −
trnL-CAA · PQ059312.1 · 93,507–93,587 bp · −
ndhB · PQ059312.1 · 94,130–96,341 bp · −
rps7 · PQ059312.1 · 96,616–97,083 bp · −
trnN-GUU · PQ059312.1 · 107,958–108,029 bp · −
ndhF · PQ059312.1 · 109,106–111,346 bp · −
ndhD · PQ059312.1 · 113,865–115,388 bp · −
psaC · PQ059312.1 · 115,487–115,732 bp · −
ndhE · PQ059312.1 · 115,989–116,294 bp · −
ndhG · PQ059312.1 · 116,515–117,045 bp · −
ndhI · PQ059312.1 · 117,410–117,910 bp · −
ndhA · PQ059312.1 · 117,991–120,083 bp · −
ndhH · PQ059312.1 · 120,085–121,296 bp · −
rps15 · PQ059312.1 · 121,369–121,641 bp · −
ycf1 · PQ059312.1 · 121,908–127,544 bp · −
trnR-ACG · PQ059312.1 · 128,381–128,454 bp · −
rrn5 · PQ059312.1 · 128,689–128,809 bp · −
rrn4.5 · PQ059312.1 · 129,057–129,159 bp · −
rrn23 · PQ059312.1 · 129,258–132,070 bp · −
trnA-UGC · PQ059312.1 · 132,240–133,122 bp · −
trnI-GAU · PQ059312.1 · 133,187–134,207 bp · −
ycf68 · PQ059312.1 · 133,813–134,052 bp · −
rrn16 · PQ059312.1 · 134,506–135,996 bp · −
trnV-GAC · PQ059312.1 · 136,224–136,295 bp · −
ycf15 · PQ059312.1 · 142,541–142,789 bp · −
ycf2 · PQ059312.1 · 142,880–149,689 bp · −
psbK · PQ059312.1 · 7,726–7,911 bp · +
psbI · PQ059312.1 · 8,304–8,414 bp · +
trnG-UCC · PQ059312.1 · 9,297–10,057 bp · +
trnR-UCU · PQ059312.1 · 10,228–10,299 bp · +
trnC-GCA · PQ059312.1 · 28,440–28,510 bp · +
petN · PQ059312.1 · 29,222–29,311 bp · +
trnT-GGU · PQ059312.1 · 31,785–31,856 bp · +
psbD · PQ059312.1 · 33,164–34,225 bp · +
psbC · PQ059312.1 · 34,173–35,594 bp · +
psbZ · PQ059312.1 · 36,241–36,429 bp · +
trnG-GCC · PQ059312.1 · 36,701–36,771 bp · +
trnS-GGA · PQ059312.1 · 45,545–45,631 bp · +
trnL-UAA · PQ059312.1 · 47,621–48,181 bp · +
trnF-GAA · PQ059312.1 · 48,488–48,560 bp · +
trnM-CAU · PQ059312.1 · 52,558–52,630 bp · +
rbcL · PQ059312.1 · 55,483–56,946 bp · +
accD · PQ059312.1 · 57,673–59,139 bp · +
psaI · PQ059312.1 · 59,698–59,808 bp · +
ycf4 · PQ059312.1 · 60,234–60,788 bp · +
cemA · PQ059312.1 · 61,526–62,125 bp · +
petA · PQ059312.1 · 62,332–63,294 bp · +
petL · PQ059312.1 · 66,018–66,113 bp · +
petG · PQ059312.1 · 66,289–66,402 bp · +
psaJ · PQ059312.1 · 67,110–67,244 bp · +
rpl33 · PQ059312.1 · 67,718–67,918 bp · +
rps18 · PQ059312.1 · 68,093–68,398 bp · +
rps12 · PQ059312.1 · 137,865–138,655 bp · +
psbB · PQ059312.1 · 72,476–74,002 bp · +
psbT · PQ059312.1 · 74,194–74,295 bp · +
psbH · PQ059312.1 · 74,604–74,825 bp · +
petB · PQ059312.1 · 74,950–76,317 bp · +
petD · PQ059312.1 · 76,506–77,707 bp · +
ycf2 · PQ059312.1 · 86,103–92,912 bp · +
ycf15 · PQ059312.1 · 93,003–93,251 bp · +
trnV-GAC · PQ059312.1 · 99,497–99,568 bp · +
rrn16 · PQ059312.1 · 99,796–101,286 bp · +
trnI-GAU · PQ059312.1 · 101,585–102,605 bp · +
trnA-UGC · PQ059312.1 · 102,670–103,552 bp · +
rrn23 · PQ059312.1 · 103,722–106,534 bp · +
rrn4.5 · PQ059312.1 · 106,633–106,735 bp · +
rrn5 · PQ059312.1 · 106,983–107,103 bp · +
trnR-ACG · PQ059312.1 · 107,338–107,411 bp · +
rpl32 · PQ059312.1 · 111,867–112,043 bp · +
trnL-UAG · PQ059312.1 · 112,488–112,567 bp · +
ccsA · PQ059312.1 · 112,664–113,638 bp · +
trnN-GUU · PQ059312.1 · 127,763–127,834 bp · +
rps7 · PQ059312.1 · 138,709–139,176 bp · +
ndhB · PQ059312.1 · 139,451–141,662 bp · +
trnL-CAA · PQ059312.1 · 142,205–142,285 bp · +
trnI-CAU · PQ059312.1 · 149,778–149,851 bp · +
rpl23 · PQ059312.1 · 150,011–150,292 bp · +
rpl2 · PQ059312.1 · 150,311–151,793 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria indica var. parvifolia
ANNOTATED PLASTOME
PQ059312.1
151,888 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37972 75944 113916 151888 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1675 4254 2580 Locate
matK gene − 1970 3496 1527 Locate
rps16 gene − 5127 6296 1170 Locate
trnQ-UUG gene − 7326 7397 72 Locate
psbK gene + 7726 7911 186 Locate
psbI gene + 8304 8414 111 Locate
trnS-GCU gene − 8525 8612 88 Locate
trnG-UCC gene + 9297 10057 761 Locate
trnR-UCU gene + 10228 10299 72 Locate
atpA gene − 10396 11919 1524 Locate
atpF gene − 12002 13236 1235 Locate
atpH gene − 13593 13838 246 Locate
atpI gene − 14834 15577 744 Locate
rps2 gene − 15926 16762 837 Locate
rpoC2 gene − 16853 21058 4206 Locate
rpoC1 gene − 21213 24042 2830 Locate
rpoB gene − 24069 27281 3213 Locate
trnC-GCA gene + 28440 28510 71 Locate
petN gene + 29222 29311 90 Locate
psbM gene − 30284 30388 105 Locate
trnD-GUC gene − 30910 30983 74 Locate
trnY-GUA gene − 31097 31180 84 Locate
trnE-UUC gene − 31240 31312 73 Locate
trnT-GGU gene + 31785 31856 72 Locate
psbD gene + 33164 34225 1062 Locate
psbC gene + 34173 35594 1422 Locate
trnS-UGA gene − 35830 35921 92 Locate
psbZ gene + 36241 36429 189 Locate
trnG-GCC gene + 36701 36771 71 Locate
trnfM-CAU gene − 36926 36999 74 Locate
rps14 gene − 37149 37451 303 Locate
psaB gene − 37579 39783 2205 Locate
psaA gene − 39809 42061 2253 Locate
ycf3 gene − 42737 44658 1922 Locate
trnS-GGA gene + 45545 45631 87 Locate
rps4 gene − 45917 46522 606 Locate
trnT-UGU gene − 46864 46936 73 Locate
trnL-UAA gene + 47621 48181 561 Locate
trnF-GAA gene + 48488 48560 73 Locate
ndhJ gene − 49209 49685 477 Locate
ndhK gene − 49785 50462 678 Locate
ndhC gene − 50515 50877 363 Locate
trnV-UAC gene − 51725 52377 653 Locate
trnM-CAU gene + 52558 52630 73 Locate
atpE gene − 52846 53247 402 Locate
atpB gene − 53244 54731 1488 Locate
rbcL gene + 55483 56946 1464 Locate
accD gene + 57673 59139 1467 Locate
psaI gene + 59698 59808 111 Locate
ycf4 gene + 60234 60788 555 Locate
cemA gene + 61526 62125 600 Locate
petA gene + 62332 63294 963 Locate
psbJ gene − 64328 64450 123 Locate
psbL gene − 64584 64700 117 Locate
psbF gene − 64724 64843 120 Locate
psbE gene − 64858 65109 252 Locate
petL gene + 66018 66113 96 Locate
petG gene + 66289 66402 114 Locate
trnW-CCA gene − 66521 66594 74 Locate
trnP-UGG gene − 66764 66837 74 Locate
psaJ gene + 67110 67244 135 Locate
rpl33 gene + 67718 67918 201 Locate
rps18 gene + 68093 68398 306 Locate
rpl20 gene − 68635 69021 387 Locate
rps12 gene − 69821 69934 114 Locate
clpP gene − 70077 72009 1933 Locate
psbB gene + 72476 74002 1527 Locate
psbT gene + 74194 74295 102 Locate
psbN gene − 74369 74500 132 Locate
psbH gene + 74604 74825 222 Locate
petB gene + 74950 76317 1368 Locate
petD gene + 76506 77707 1202 Locate
rpoA gene − 77870 78883 1014 Locate
rps11 gene − 78955 79371 417 Locate
rpl36 gene − 79473 79586 114 Locate
infA gene − 79682 79915 234 Locate
rps8 gene − 80036 80446 411 Locate
rpl14 gene − 80615 80983 369 Locate
rpl16 gene − 81110 82332 1223 Locate
rps3 gene − 82487 83149 663 Locate
rpl22 gene − 83151 83606 456 Locate
rps19 gene − 83666 83944 279 Locate
rpl2 gene − 83999 85481 1483 Locate
rpl23 gene − 85500 85781 282 Locate
trnI-CAU gene − 85941 86014 74 Locate
ycf2 gene + 86103 92912 6810 Locate
ycf15 gene + 93003 93251 249 Locate
trnL-CAA gene − 93507 93587 81 Locate
ndhB gene − 94130 96341 2212 Locate
rps7 gene − 96616 97083 468 Locate
rps12 gene − 97137 97927 791 Locate
trnV-GAC gene + 99497 99568 72 Locate
rrn16 gene + 99796 101286 1491 Locate
trnI-GAU gene + 101585 102605 1021 Locate
trnA-UGC gene + 102670 103552 883 Locate
rrn23 gene + 103722 106534 2813 Locate
rrn4.5 gene + 106633 106735 103 Locate
rrn5 gene + 106983 107103 121 Locate
trnR-ACG gene + 107338 107411 74 Locate
trnN-GUU gene − 107958 108029 72 Locate
ndhF gene − 109106 111346 2241 Locate
rpl32 gene + 111867 112043 177 Locate
trnL-UAG gene + 112488 112567 80 Locate
ccsA gene + 112664 113638 975 Locate
ndhD gene − 113865 115388 1524 Locate
psaC gene − 115487 115732 246 Locate
ndhE gene − 115989 116294 306 Locate
ndhG gene − 116515 117045 531 Locate
ndhI gene − 117410 117910 501 Locate
ndhA gene − 117991 120083 2093 Locate
ndhH gene − 120085 121296 1212 Locate
rps15 gene − 121369 121641 273 Locate
ycf1 gene − 121908 127544 5637 Locate
trnN-GUU gene + 127763 127834 72 Locate
trnR-ACG gene − 128381 128454 74 Locate
rrn5 gene − 128689 128809 121 Locate
rrn4.5 gene − 129057 129159 103 Locate
rrn23 gene − 129258 132070 2813 Locate
trnA-UGC gene − 132240 133122 883 Locate
trnI-GAU gene − 133187 134207 1021 Locate
ycf68 gene − 133813 134052 240 Locate
rrn16 gene − 134506 135996 1491 Locate
trnV-GAC gene − 136224 136295 72 Locate
rps12 gene + 137865 138655 791 Locate
rps7 gene + 138709 139176 468 Locate
ndhB gene + 139451 141662 2212 Locate
trnL-CAA gene + 142205 142285 81 Locate
ycf15 gene − 142541 142789 249 Locate
ycf2 gene − 142880 149689 6810 Locate
trnI-CAU gene + 149778 149851 74 Locate
rpl23 gene + 150011 150292 282 Locate
rpl2 gene + 150311 151793 1483 Locate
Status Available
Accession PQ059312.1
Length 151,888 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources