Scutellaria indica var. subacaulis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059311.1 · 3–76 bp · −
psbA · PQ059311.1 · 365–1,423 bp · −
trnK-UUU · PQ059311.1 · 1,657–4,245 bp · −
matK · PQ059311.1 · 1,952–3,487 bp · −
rps16 · PQ059311.1 · 5,119–6,291 bp · −
trnQ-UUG · PQ059311.1 · 7,330–7,401 bp · −
trnS-GCU · PQ059311.1 · 8,532–8,619 bp · −
atpA · PQ059311.1 · 10,398–11,921 bp · −
atpF · PQ059311.1 · 12,004–13,231 bp · −
atpH · PQ059311.1 · 13,588–13,833 bp · −
atpI · PQ059311.1 · 14,829–15,572 bp · −
rps2 · PQ059311.1 · 15,921–16,631 bp · −
rpoC2 · PQ059311.1 · 16,848–21,053 bp · −
rpoC1 · PQ059311.1 · 21,208–24,036 bp · −
rpoB · PQ059311.1 · 24,063–27,275 bp · −
psbM · PQ059311.1 · 30,310–30,414 bp · −
trnD-GUC · PQ059311.1 · 30,941–31,014 bp · −
trnY-GUA · PQ059311.1 · 31,128–31,211 bp · −
trnE-UUC · PQ059311.1 · 31,271–31,343 bp · −
trnS-UGA · PQ059311.1 · 35,963–36,054 bp · −
trnfM-CAU · PQ059311.1 · 37,059–37,132 bp · −
rps14 · PQ059311.1 · 37,282–37,584 bp · −
psaB · PQ059311.1 · 37,712–39,916 bp · −
psaA · PQ059311.1 · 39,942–42,194 bp · −
ycf3 · PQ059311.1 · 42,861–44,784 bp · −
rps4 · PQ059311.1 · 46,041–46,646 bp · −
trnT-UGU · PQ059311.1 · 46,975–47,047 bp · −
ndhJ · PQ059311.1 · 49,259–49,735 bp · −
ndhK · PQ059311.1 · 49,843–50,520 bp · −
ndhC · PQ059311.1 · 50,573–50,935 bp · −
trnV-UAC · PQ059311.1 · 51,780–52,432 bp · −
atpE · PQ059311.1 · 52,901–53,302 bp · −
atpB · PQ059311.1 · 53,299–54,786 bp · −
psbJ · PQ059311.1 · 64,390–64,512 bp · −
psbL · PQ059311.1 · 64,646–64,867 bp · −
psbF · PQ059311.1 · 64,786–64,905 bp · −
psbE · PQ059311.1 · 64,920–65,171 bp · −
trnW-CCA · PQ059311.1 · 66,583–66,656 bp · −
trnP-UGG · PQ059311.1 · 66,826–66,899 bp · −
rpl20 · PQ059311.1 · 68,697–69,083 bp · −
rps12 · PQ059311.1 · 69,884–69,997 bp · −
rps12 · PQ059311.1 · 97,224–98,014 bp · −
clpP · PQ059311.1 · 70,140–72,072 bp · −
psbN · PQ059311.1 · 74,432–74,563 bp · −
rpoA · PQ059311.1 · 77,933–78,946 bp · −
rps11 · PQ059311.1 · 79,025–79,441 bp · −
rpl36 · PQ059311.1 · 79,543–79,656 bp · −
infA · PQ059311.1 · 79,752–79,985 bp · −
rps8 · PQ059311.1 · 80,105–80,515 bp · −
rpl14 · PQ059311.1 · 80,685–81,053 bp · −
rpl16 · PQ059311.1 · 81,180–82,413 bp · −
rps3 · PQ059311.1 · 82,568–83,230 bp · −
rpl22 · PQ059311.1 · 83,232–83,687 bp · −
rps19 · PQ059311.1 · 83,747–84,025 bp · −
rpl2 · PQ059311.1 · 84,080–85,568 bp · −
rpl23 · PQ059311.1 · 85,587–85,868 bp · −
trnI-CAU · PQ059311.1 · 86,028–86,101 bp · −
trnL-CAA · PQ059311.1 · 93,594–93,674 bp · −
ndhB · PQ059311.1 · 94,217–96,374 bp · −
rps7 · PQ059311.1 · 96,703–97,170 bp · −
trnN-GUU · PQ059311.1 · 108,055–108,126 bp · −
ndhF · PQ059311.1 · 109,203–111,443 bp · −
ndhD · PQ059311.1 · 113,968–115,470 bp · −
psaC · PQ059311.1 · 115,590–115,835 bp · −
ndhE · PQ059311.1 · 116,092–116,397 bp · −
ndhG · PQ059311.1 · 116,628–117,158 bp · −
ndhI · PQ059311.1 · 117,523–118,023 bp · −
ndhA · PQ059311.1 · 118,104–120,195 bp · −
ndhH · PQ059311.1 · 120,197–121,408 bp · −
rps15 · PQ059311.1 · 121,481–121,813 bp · −
ycf1 · PQ059311.1 · 122,020–127,665 bp · −
trnR-ACG · PQ059311.1 · 128,502–128,575 bp · −
rrn5 · PQ059311.1 · 128,810–128,930 bp · −
rrn4.5 · PQ059311.1 · 129,178–129,280 bp · −
rrn23 · PQ059311.1 · 129,379–132,191 bp · −
trnA-UGC · PQ059311.1 · 132,361–133,245 bp · −
trnI-GAU · PQ059311.1 · 133,310–134,330 bp · −
ycf68 · PQ059311.1 · 133,936–134,175 bp · −
rrn16 · PQ059311.1 · 134,629–136,119 bp · −
trnV-GAC · PQ059311.1 · 136,347–136,418 bp · −
ycf15 · PQ059311.1 · 142,672–142,869 bp · −
ycf2 · PQ059311.1 · 143,011–149,820 bp · −
psbK · PQ059311.1 · 7,726–7,911 bp · +
psbI · PQ059311.1 · 8,303–8,413 bp · +
trnG-UCC · PQ059311.1 · 9,299–10,059 bp · +
trnR-UCU · PQ059311.1 · 10,230–10,301 bp · +
trnC-GCA · PQ059311.1 · 28,445–28,515 bp · +
petN · PQ059311.1 · 29,228–29,317 bp · +
trnT-GGU · PQ059311.1 · 31,919–31,990 bp · +
psbD · PQ059311.1 · 33,297–34,358 bp · +
psbC · PQ059311.1 · 34,306–35,727 bp · +
psbZ · PQ059311.1 · 36,374–36,562 bp · +
trnG-GCC · PQ059311.1 · 36,834–36,904 bp · +
trnS-GGA · PQ059311.1 · 45,669–45,755 bp · +
trnL-UAA · PQ059311.1 · 47,670–48,231 bp · +
trnF-GAA · PQ059311.1 · 48,538–48,610 bp · +
trnM-CAU · PQ059311.1 · 52,613–52,685 bp · +
rbcL · PQ059311.1 · 55,536–56,999 bp · +
accD · PQ059311.1 · 57,726–59,192 bp · +
psaI · PQ059311.1 · 59,750–59,860 bp · +
ycf4 · PQ059311.1 · 60,294–60,848 bp · +
cemA · PQ059311.1 · 61,586–62,185 bp · +
petA · PQ059311.1 · 62,392–63,354 bp · +
petL · PQ059311.1 · 66,080–66,175 bp · +
petG · PQ059311.1 · 66,351–66,464 bp · +
psaJ · PQ059311.1 · 67,172–67,306 bp · +
rpl33 · PQ059311.1 · 67,780–67,980 bp · +
rps18 · PQ059311.1 · 68,156–68,461 bp · +
rps12 · PQ059311.1 · 137,996–138,786 bp · +
psbB · PQ059311.1 · 72,539–74,065 bp · +
psbT · PQ059311.1 · 74,257–74,358 bp · +
psbH · PQ059311.1 · 74,667–74,888 bp · +
petB · PQ059311.1 · 75,013–76,380 bp · +
petD · PQ059311.1 · 76,569–77,770 bp · +
ycf2 · PQ059311.1 · 86,190–92,999 bp · +
ycf15 · PQ059311.1 · 93,141–93,338 bp · +
trnV-GAC · PQ059311.1 · 99,592–99,663 bp · +
rrn16 · PQ059311.1 · 99,891–101,381 bp · +
trnI-GAU · PQ059311.1 · 101,680–102,700 bp · +
trnA-UGC · PQ059311.1 · 102,765–103,649 bp · +
rrn23 · PQ059311.1 · 103,819–106,631 bp · +
rrn4.5 · PQ059311.1 · 106,730–106,832 bp · +
rrn5 · PQ059311.1 · 107,080–107,200 bp · +
trnR-ACG · PQ059311.1 · 107,435–107,508 bp · +
rpl32 · PQ059311.1 · 111,964–112,140 bp · +
trnL-UAG · PQ059311.1 · 112,585–112,664 bp · +
ccsA · PQ059311.1 · 112,761–113,735 bp · +
trnN-GUU · PQ059311.1 · 127,884–127,955 bp · +
rps7 · PQ059311.1 · 138,840–139,307 bp · +
ndhB · PQ059311.1 · 139,636–141,793 bp · +
trnL-CAA · PQ059311.1 · 142,336–142,416 bp · +
trnI-CAU · PQ059311.1 · 149,909–149,982 bp · +
rpl23 · PQ059311.1 · 150,142–150,423 bp · +
rpl2 · PQ059311.1 · 150,442–151,930 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria indica var. subacaulis
ANNOTATED PLASTOME
PQ059311.1
152,025 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38006 76012 114019 152025 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1657 4245 2589 Locate
matK gene − 1952 3487 1536 Locate
rps16 gene − 5119 6291 1173 Locate
trnQ-UUG gene − 7330 7401 72 Locate
psbK gene + 7726 7911 186 Locate
psbI gene + 8303 8413 111 Locate
trnS-GCU gene − 8532 8619 88 Locate
trnG-UCC gene + 9299 10059 761 Locate
trnR-UCU gene + 10230 10301 72 Locate
atpA gene − 10398 11921 1524 Locate
atpF gene − 12004 13231 1228 Locate
atpH gene − 13588 13833 246 Locate
atpI gene − 14829 15572 744 Locate
rps2 gene − 15921 16631 711 Locate
rpoC2 gene − 16848 21053 4206 Locate
rpoC1 gene − 21208 24036 2829 Locate
rpoB gene − 24063 27275 3213 Locate
trnC-GCA gene + 28445 28515 71 Locate
petN gene + 29228 29317 90 Locate
psbM gene − 30310 30414 105 Locate
trnD-GUC gene − 30941 31014 74 Locate
trnY-GUA gene − 31128 31211 84 Locate
trnE-UUC gene − 31271 31343 73 Locate
trnT-GGU gene + 31919 31990 72 Locate
psbD gene + 33297 34358 1062 Locate
psbC gene + 34306 35727 1422 Locate
trnS-UGA gene − 35963 36054 92 Locate
psbZ gene + 36374 36562 189 Locate
trnG-GCC gene + 36834 36904 71 Locate
trnfM-CAU gene − 37059 37132 74 Locate
rps14 gene − 37282 37584 303 Locate
psaB gene − 37712 39916 2205 Locate
psaA gene − 39942 42194 2253 Locate
ycf3 gene − 42861 44784 1924 Locate
trnS-GGA gene + 45669 45755 87 Locate
rps4 gene − 46041 46646 606 Locate
trnT-UGU gene − 46975 47047 73 Locate
trnL-UAA gene + 47670 48231 562 Locate
trnF-GAA gene + 48538 48610 73 Locate
ndhJ gene − 49259 49735 477 Locate
ndhK gene − 49843 50520 678 Locate
ndhC gene − 50573 50935 363 Locate
trnV-UAC gene − 51780 52432 653 Locate
trnM-CAU gene + 52613 52685 73 Locate
atpE gene − 52901 53302 402 Locate
atpB gene − 53299 54786 1488 Locate
rbcL gene + 55536 56999 1464 Locate
accD gene + 57726 59192 1467 Locate
psaI gene + 59750 59860 111 Locate
ycf4 gene + 60294 60848 555 Locate
cemA gene + 61586 62185 600 Locate
petA gene + 62392 63354 963 Locate
psbJ gene − 64390 64512 123 Locate
psbL gene − 64646 64867 222 Locate
psbF gene − 64786 64905 120 Locate
psbE gene − 64920 65171 252 Locate
petL gene + 66080 66175 96 Locate
petG gene + 66351 66464 114 Locate
trnW-CCA gene − 66583 66656 74 Locate
trnP-UGG gene − 66826 66899 74 Locate
psaJ gene + 67172 67306 135 Locate
rpl33 gene + 67780 67980 201 Locate
rps18 gene + 68156 68461 306 Locate
rpl20 gene − 68697 69083 387 Locate
rps12 gene − 69884 69997 114 Locate
clpP gene − 70140 72072 1933 Locate
psbB gene + 72539 74065 1527 Locate
psbT gene + 74257 74358 102 Locate
psbN gene − 74432 74563 132 Locate
psbH gene + 74667 74888 222 Locate
petB gene + 75013 76380 1368 Locate
petD gene + 76569 77770 1202 Locate
rpoA gene − 77933 78946 1014 Locate
rps11 gene − 79025 79441 417 Locate
rpl36 gene − 79543 79656 114 Locate
infA gene − 79752 79985 234 Locate
rps8 gene − 80105 80515 411 Locate
rpl14 gene − 80685 81053 369 Locate
rpl16 gene − 81180 82413 1234 Locate
rps3 gene − 82568 83230 663 Locate
rpl22 gene − 83232 83687 456 Locate
rps19 gene − 83747 84025 279 Locate
rpl2 gene − 84080 85568 1489 Locate
rpl23 gene − 85587 85868 282 Locate
trnI-CAU gene − 86028 86101 74 Locate
ycf2 gene + 86190 92999 6810 Locate
ycf15 gene + 93141 93338 198 Locate
trnL-CAA gene − 93594 93674 81 Locate
ndhB gene − 94217 96374 2158 Locate
rps7 gene − 96703 97170 468 Locate
rps12 gene − 97224 98014 791 Locate
trnV-GAC gene + 99592 99663 72 Locate
rrn16 gene + 99891 101381 1491 Locate
trnI-GAU gene + 101680 102700 1021 Locate
trnA-UGC gene + 102765 103649 885 Locate
rrn23 gene + 103819 106631 2813 Locate
rrn4.5 gene + 106730 106832 103 Locate
rrn5 gene + 107080 107200 121 Locate
trnR-ACG gene + 107435 107508 74 Locate
trnN-GUU gene − 108055 108126 72 Locate
ndhF gene − 109203 111443 2241 Locate
rpl32 gene + 111964 112140 177 Locate
trnL-UAG gene + 112585 112664 80 Locate
ccsA gene + 112761 113735 975 Locate
ndhD gene − 113968 115470 1503 Locate
psaC gene − 115590 115835 246 Locate
ndhE gene − 116092 116397 306 Locate
ndhG gene − 116628 117158 531 Locate
ndhI gene − 117523 118023 501 Locate
ndhA gene − 118104 120195 2092 Locate
ndhH gene − 120197 121408 1212 Locate
rps15 gene − 121481 121813 333 Locate
ycf1 gene − 122020 127665 5646 Locate
trnN-GUU gene + 127884 127955 72 Locate
trnR-ACG gene − 128502 128575 74 Locate
rrn5 gene − 128810 128930 121 Locate
rrn4.5 gene − 129178 129280 103 Locate
rrn23 gene − 129379 132191 2813 Locate
trnA-UGC gene − 132361 133245 885 Locate
trnI-GAU gene − 133310 134330 1021 Locate
ycf68 gene − 133936 134175 240 Locate
rrn16 gene − 134629 136119 1491 Locate
trnV-GAC gene − 136347 136418 72 Locate
rps12 gene + 137996 138786 791 Locate
rps7 gene + 138840 139307 468 Locate
ndhB gene + 139636 141793 2158 Locate
trnL-CAA gene + 142336 142416 81 Locate
ycf15 gene − 142672 142869 198 Locate
ycf2 gene − 143011 149820 6810 Locate
trnI-CAU gene + 149909 149982 74 Locate
rpl23 gene + 150142 150423 282 Locate
rpl2 gene + 150442 151930 1489 Locate
Status Available
Accession PQ059311.1
Length 152,025 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources