Scutellaria integrifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059295.1 · 2–75 bp · −
psbA · PQ059295.1 · 381–1,439 bp · −
trnK-UUU · PQ059295.1 · 1,682–4,276 bp · −
matK · PQ059295.1 · 1,983–3,518 bp · −
rps16 · PQ059295.1 · 5,179–6,340 bp · −
trnQ-UUG · PQ059295.1 · 7,433–7,504 bp · −
trnS-GCU · PQ059295.1 · 8,623–8,710 bp · −
atpA · PQ059295.1 · 10,502–12,025 bp · −
atpF · PQ059295.1 · 12,098–13,331 bp · −
atpH · PQ059295.1 · 13,694–13,939 bp · −
atpI · PQ059295.1 · 14,928–15,671 bp · −
rps2 · PQ059295.1 · 16,011–16,847 bp · −
rpoC2 · PQ059295.1 · 16,944–21,137 bp · −
rpoC1 · PQ059295.1 · 21,292–24,099 bp · −
rpoB · PQ059295.1 · 24,126–27,338 bp · −
psbM · PQ059295.1 · 30,367–30,471 bp · −
trnD-GUC · PQ059295.1 · 30,993–31,066 bp · −
trnY-GUA · PQ059295.1 · 31,186–31,269 bp · −
trnE-UUC · PQ059295.1 · 31,329–31,401 bp · −
trnS-UGA · PQ059295.1 · 36,019–36,110 bp · −
trnfM-CAU · PQ059295.1 · 37,118–37,191 bp · −
rps14 · PQ059295.1 · 37,341–37,643 bp · −
psaB · PQ059295.1 · 37,771–39,975 bp · −
psaA · PQ059295.1 · 40,000–42,252 bp · −
ycf3 · PQ059295.1 · 42,948–44,859 bp · −
rps4 · PQ059295.1 · 45,570–46,175 bp · −
trnT-UGU · PQ059295.1 · 46,515–46,587 bp · −
ndhJ · PQ059295.1 · 48,812–49,288 bp · −
ndhK · PQ059295.1 · 49,396–50,073 bp · −
ndhC · PQ059295.1 · 50,126–50,488 bp · −
trnV-UAC · PQ059295.1 · 51,490–52,142 bp · −
atpE · PQ059295.1 · 52,606–53,007 bp · −
atpB · PQ059295.1 · 53,004–54,500 bp · −
psbJ · PQ059295.1 · 64,237–64,359 bp · −
psbL · PQ059295.1 · 64,494–64,610 bp · −
psbF · PQ059295.1 · 64,634–64,753 bp · −
psbE · PQ059295.1 · 64,768–65,019 bp · −
trnW-CCA · PQ059295.1 · 66,430–66,503 bp · −
trnP-UGG · PQ059295.1 · 66,667–66,740 bp · −
rpl20 · PQ059295.1 · 68,531–68,917 bp · −
rps12 · PQ059295.1 · 69,714–69,827 bp · −
rps12 · PQ059295.1 · 97,020–97,810 bp · −
clpP · PQ059295.1 · 69,969–71,898 bp · −
psbN · PQ059295.1 · 74,243–74,374 bp · −
rpoA · PQ059295.1 · 77,751–78,764 bp · −
rps11 · PQ059295.1 · 78,836–79,252 bp · −
rpl36 · PQ059295.1 · 79,354–79,467 bp · −
infA · PQ059295.1 · 79,563–79,796 bp · −
rps8 · PQ059295.1 · 79,917–80,327 bp · −
rpl14 · PQ059295.1 · 80,486–80,854 bp · −
rpl16 · PQ059295.1 · 80,981–82,224 bp · −
rps3 · PQ059295.1 · 82,379–83,041 bp · −
rpl22 · PQ059295.1 · 83,043–83,498 bp · −
rps19 · PQ059295.1 · 83,563–83,841 bp · −
rpl2 · PQ059295.1 · 83,898–85,380 bp · −
rpl23 · PQ059295.1 · 85,399–85,680 bp · −
trnI-CAU · PQ059295.1 · 85,840–85,913 bp · −
trnL-CAA · PQ059295.1 · 93,399–93,479 bp · −
ndhB · PQ059295.1 · 94,022–96,224 bp · −
rps7 · PQ059295.1 · 96,499–96,966 bp · −
trnN-GUU · PQ059295.1 · 107,830–107,901 bp · −
ndhF · PQ059295.1 · 108,978–111,218 bp · −
ndhD · PQ059295.1 · 113,736–115,238 bp · −
psaC · PQ059295.1 · 115,365–115,610 bp · −
ndhE · PQ059295.1 · 115,862–116,167 bp · −
ndhG · PQ059295.1 · 116,398–116,928 bp · −
ndhI · PQ059295.1 · 117,293–117,793 bp · −
ndhA · PQ059295.1 · 117,874–119,971 bp · −
ndhH · PQ059295.1 · 119,973–121,154 bp · −
rps15 · PQ059295.1 · 121,251–121,523 bp · −
ycf1 · PQ059295.1 · 121,797–127,349 bp · −
trnR-ACG · PQ059295.1 · 128,187–128,260 bp · −
rrn5 · PQ059295.1 · 128,485–128,605 bp · −
rrn4.5 · PQ059295.1 · 128,853–128,955 bp · −
rrn23 · PQ059295.1 · 129,054–131,866 bp · −
trnA-UGC · PQ059295.1 · 132,029–132,916 bp · −
trnI-GAU · PQ059295.1 · 132,981–134,001 bp · −
ycf68 · PQ059295.1 · 133,607–133,846 bp · −
rrn16 · PQ059295.1 · 134,300–135,790 bp · −
trnV-GAC · PQ059295.1 · 136,018–136,089 bp · −
ycf15 · PQ059295.1 · 142,331–142,528 bp · −
ycf2 · PQ059295.1 · 142,670–149,467 bp · −
psbK · PQ059295.1 · 7,837–8,022 bp · +
psbI · PQ059295.1 · 8,404–8,514 bp · +
trnG-UCC · PQ059295.1 · 9,392–10,153 bp · +
trnR-UCU · PQ059295.1 · 10,328–10,399 bp · +
trnC-GCA · PQ059295.1 · 28,495–28,565 bp · +
petN · PQ059295.1 · 29,277–29,366 bp · +
trnT-GGU · PQ059295.1 · 31,985–32,056 bp · +
psbD · PQ059295.1 · 33,349–34,410 bp · +
psbC · PQ059295.1 · 34,358–35,779 bp · +
psbZ · PQ059295.1 · 36,430–36,618 bp · +
trnG-GCC · PQ059295.1 · 36,894–36,964 bp · +
trnS-GGA · PQ059295.1 · 45,200–45,286 bp · +
trnL-UAA · PQ059295.1 · 47,219–47,782 bp · +
trnF-GAA · PQ059295.1 · 48,088–48,160 bp · +
trnM-CAU · PQ059295.1 · 52,323–52,395 bp · +
rbcL · PQ059295.1 · 55,246–56,709 bp · +
accD · PQ059295.1 · 57,421–58,899 bp · +
psaI · PQ059295.1 · 59,594–59,704 bp · +
ycf4 · PQ059295.1 · 60,131–60,685 bp · +
cemA · PQ059295.1 · 61,426–62,025 bp · +
petA · PQ059295.1 · 62,232–63,194 bp · +
petL · PQ059295.1 · 65,927–66,022 bp · +
petG · PQ059295.1 · 66,198–66,311 bp · +
psaJ · PQ059295.1 · 67,009–67,143 bp · +
rpl33 · PQ059295.1 · 67,616–67,816 bp · +
rps18 · PQ059295.1 · 67,990–68,295 bp · +
rps12 · PQ059295.1 · 137,659–138,449 bp · +
psbB · PQ059295.1 · 72,350–73,876 bp · +
psbT · PQ059295.1 · 74,068–74,169 bp · +
psbH · PQ059295.1 · 74,478–74,699 bp · +
petB · PQ059295.1 · 74,824–76,194 bp · +
petD · PQ059295.1 · 76,383–77,588 bp · +
ycf2 · PQ059295.1 · 86,002–92,799 bp · +
ycf15 · PQ059295.1 · 92,941–93,138 bp · +
trnV-GAC · PQ059295.1 · 99,380–99,451 bp · +
rrn16 · PQ059295.1 · 99,679–101,169 bp · +
trnI-GAU · PQ059295.1 · 101,468–102,488 bp · +
trnA-UGC · PQ059295.1 · 102,553–103,440 bp · +
rrn23 · PQ059295.1 · 103,603–106,415 bp · +
rrn4.5 · PQ059295.1 · 106,514–106,616 bp · +
rrn5 · PQ059295.1 · 106,864–106,984 bp · +
trnR-ACG · PQ059295.1 · 107,209–107,282 bp · +
rpl32 · PQ059295.1 · 111,742–111,918 bp · +
trnL-UAG · PQ059295.1 · 112,354–112,433 bp · +
ccsA · PQ059295.1 · 112,527–113,501 bp · +
trnN-GUU · PQ059295.1 · 127,568–127,639 bp · +
rps7 · PQ059295.1 · 138,503–138,970 bp · +
ndhB · PQ059295.1 · 139,245–141,447 bp · +
trnL-CAA · PQ059295.1 · 141,990–142,070 bp · +
trnI-CAU · PQ059295.1 · 149,556–149,629 bp · +
rpl23 · PQ059295.1 · 149,789–150,070 bp · +
rpl2 · PQ059295.1 · 150,089–151,571 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria integrifolia
ANNOTATED PLASTOME
PQ059295.1
151,669 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37917 75834 113752 151669 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1682 4276 2595 Locate
matK gene − 1983 3518 1536 Locate
rps16 gene − 5179 6340 1162 Locate
trnQ-UUG gene − 7433 7504 72 Locate
psbK gene + 7837 8022 186 Locate
psbI gene + 8404 8514 111 Locate
trnS-GCU gene − 8623 8710 88 Locate
trnG-UCC gene + 9392 10153 762 Locate
trnR-UCU gene + 10328 10399 72 Locate
atpA gene − 10502 12025 1524 Locate
atpF gene − 12098 13331 1234 Locate
atpH gene − 13694 13939 246 Locate
atpI gene − 14928 15671 744 Locate
rps2 gene − 16011 16847 837 Locate
rpoC2 gene − 16944 21137 4194 Locate
rpoC1 gene − 21292 24099 2808 Locate
rpoB gene − 24126 27338 3213 Locate
trnC-GCA gene + 28495 28565 71 Locate
petN gene + 29277 29366 90 Locate
psbM gene − 30367 30471 105 Locate
trnD-GUC gene − 30993 31066 74 Locate
trnY-GUA gene − 31186 31269 84 Locate
trnE-UUC gene − 31329 31401 73 Locate
trnT-GGU gene + 31985 32056 72 Locate
psbD gene + 33349 34410 1062 Locate
psbC gene + 34358 35779 1422 Locate
trnS-UGA gene − 36019 36110 92 Locate
psbZ gene + 36430 36618 189 Locate
trnG-GCC gene + 36894 36964 71 Locate
trnfM-CAU gene − 37118 37191 74 Locate
rps14 gene − 37341 37643 303 Locate
psaB gene − 37771 39975 2205 Locate
psaA gene − 40000 42252 2253 Locate
ycf3 gene − 42948 44859 1912 Locate
trnS-GGA gene + 45200 45286 87 Locate
rps4 gene − 45570 46175 606 Locate
trnT-UGU gene − 46515 46587 73 Locate
trnL-UAA gene + 47219 47782 564 Locate
trnF-GAA gene + 48088 48160 73 Locate
ndhJ gene − 48812 49288 477 Locate
ndhK gene − 49396 50073 678 Locate
ndhC gene − 50126 50488 363 Locate
trnV-UAC gene − 51490 52142 653 Locate
trnM-CAU gene + 52323 52395 73 Locate
atpE gene − 52606 53007 402 Locate
atpB gene − 53004 54500 1497 Locate
rbcL gene + 55246 56709 1464 Locate
accD gene + 57421 58899 1479 Locate
psaI gene + 59594 59704 111 Locate
ycf4 gene + 60131 60685 555 Locate
cemA gene + 61426 62025 600 Locate
petA gene + 62232 63194 963 Locate
psbJ gene − 64237 64359 123 Locate
psbL gene − 64494 64610 117 Locate
psbF gene − 64634 64753 120 Locate
psbE gene − 64768 65019 252 Locate
petL gene + 65927 66022 96 Locate
petG gene + 66198 66311 114 Locate
trnW-CCA gene − 66430 66503 74 Locate
trnP-UGG gene − 66667 66740 74 Locate
psaJ gene + 67009 67143 135 Locate
rpl33 gene + 67616 67816 201 Locate
rps18 gene + 67990 68295 306 Locate
rpl20 gene − 68531 68917 387 Locate
rps12 gene − 69714 69827 114 Locate
clpP gene − 69969 71898 1930 Locate
psbB gene + 72350 73876 1527 Locate
psbT gene + 74068 74169 102 Locate
psbN gene − 74243 74374 132 Locate
psbH gene + 74478 74699 222 Locate
petB gene + 74824 76194 1371 Locate
petD gene + 76383 77588 1206 Locate
rpoA gene − 77751 78764 1014 Locate
rps11 gene − 78836 79252 417 Locate
rpl36 gene − 79354 79467 114 Locate
infA gene − 79563 79796 234 Locate
rps8 gene − 79917 80327 411 Locate
rpl14 gene − 80486 80854 369 Locate
rpl16 gene − 80981 82224 1244 Locate
rps3 gene − 82379 83041 663 Locate
rpl22 gene − 83043 83498 456 Locate
rps19 gene − 83563 83841 279 Locate
rpl2 gene − 83898 85380 1483 Locate
rpl23 gene − 85399 85680 282 Locate
trnI-CAU gene − 85840 85913 74 Locate
ycf2 gene + 86002 92799 6798 Locate
ycf15 gene + 92941 93138 198 Locate
trnL-CAA gene − 93399 93479 81 Locate
ndhB gene − 94022 96224 2203 Locate
rps7 gene − 96499 96966 468 Locate
rps12 gene − 97020 97810 791 Locate
trnV-GAC gene + 99380 99451 72 Locate
rrn16 gene + 99679 101169 1491 Locate
trnI-GAU gene + 101468 102488 1021 Locate
trnA-UGC gene + 102553 103440 888 Locate
rrn23 gene + 103603 106415 2813 Locate
rrn4.5 gene + 106514 106616 103 Locate
rrn5 gene + 106864 106984 121 Locate
trnR-ACG gene + 107209 107282 74 Locate
trnN-GUU gene − 107830 107901 72 Locate
ndhF gene − 108978 111218 2241 Locate
rpl32 gene + 111742 111918 177 Locate
trnL-UAG gene + 112354 112433 80 Locate
ccsA gene + 112527 113501 975 Locate
ndhD gene − 113736 115238 1503 Locate
psaC gene − 115365 115610 246 Locate
ndhE gene − 115862 116167 306 Locate
ndhG gene − 116398 116928 531 Locate
ndhI gene − 117293 117793 501 Locate
ndhA gene − 117874 119971 2098 Locate
ndhH gene − 119973 121154 1182 Locate
rps15 gene − 121251 121523 273 Locate
ycf1 gene − 121797 127349 5553 Locate
trnN-GUU gene + 127568 127639 72 Locate
trnR-ACG gene − 128187 128260 74 Locate
rrn5 gene − 128485 128605 121 Locate
rrn4.5 gene − 128853 128955 103 Locate
rrn23 gene − 129054 131866 2813 Locate
trnA-UGC gene − 132029 132916 888 Locate
trnI-GAU gene − 132981 134001 1021 Locate
ycf68 gene − 133607 133846 240 Locate
rrn16 gene − 134300 135790 1491 Locate
trnV-GAC gene − 136018 136089 72 Locate
rps12 gene + 137659 138449 791 Locate
rps7 gene + 138503 138970 468 Locate
ndhB gene + 139245 141447 2203 Locate
trnL-CAA gene + 141990 142070 81 Locate
ycf15 gene − 142331 142528 198 Locate
ycf2 gene − 142670 149467 6798 Locate
trnI-CAU gene + 149556 149629 74 Locate
rpl23 gene + 149789 150070 282 Locate
rpl2 gene + 150089 151571 1483 Locate
Status Available
Accession PQ059295.1
Length 151,669 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources