Scutellaria isocheila chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058270.1 · 3–76 bp · −
psbA · PQ058270.1 · 375–1,433 bp · −
trnK-UUU · PQ058270.1 · 1,674–4,270 bp · −
matK · PQ058270.1 · 1,969–3,513 bp · −
rps16 · PQ058270.1 · 5,193–6,327 bp · −
trnQ-UUG · PQ058270.1 · 7,513–7,584 bp · −
trnS-GCU · PQ058270.1 · 8,718–8,805 bp · −
atpA · PQ058270.1 · 10,584–12,107 bp · −
atpF · PQ058270.1 · 12,190–13,438 bp · −
atpH · PQ058270.1 · 13,800–14,045 bp · −
atpI · PQ058270.1 · 15,035–15,778 bp · −
rps2 · PQ058270.1 · 16,125–16,961 bp · −
rpoC2 · PQ058270.1 · 17,052–21,251 bp · −
rpoC1 · PQ058270.1 · 21,397–24,243 bp · −
rpoB · PQ058270.1 · 24,270–27,482 bp · −
psbM · PQ058270.1 · 30,593–30,706 bp · −
trnD-GUC · PQ058270.1 · 31,249–31,322 bp · −
trnY-GUA · PQ058270.1 · 31,436–31,519 bp · −
trnE-UUC · PQ058270.1 · 31,575–31,647 bp · −
trnS-UGA · PQ058270.1 · 36,251–36,342 bp · −
trnfM-CAU · PQ058270.1 · 37,336–37,409 bp · −
rps14 · PQ058270.1 · 37,559–37,861 bp · −
psaB · PQ058270.1 · 37,989–40,193 bp · −
psaA · PQ058270.1 · 40,219–42,471 bp · −
ycf3 · PQ058270.1 · 43,168–45,092 bp · −
rps4 · PQ058270.1 · 46,338–46,943 bp · −
trnT-UGU · PQ058270.1 · 47,280–47,352 bp · −
ndhJ · PQ058270.1 · 49,621–50,097 bp · −
ndhK · PQ058270.1 · 50,205–50,882 bp · −
ndhC · PQ058270.1 · 50,936–51,298 bp · −
trnV-UAC · PQ058270.1 · 51,755–52,403 bp · −
atpE · PQ058270.1 · 52,865–53,266 bp · −
atpB · PQ058270.1 · 53,263–54,759 bp · −
psbJ · PQ058270.1 · 64,504–64,626 bp · −
psbL · PQ058270.1 · 64,760–64,876 bp · −
psbF · PQ058270.1 · 64,900–65,019 bp · −
psbE · PQ058270.1 · 65,034–65,285 bp · −
trnW-CCA · PQ058270.1 · 66,695–66,768 bp · −
trnP-UGG · PQ058270.1 · 66,932–67,005 bp · −
rpl20 · PQ058270.1 · 68,843–69,229 bp · −
rps12 · PQ058270.1 · 70,013–70,138 bp · −
rps12 · PQ058270.1 · 97,363–98,153 bp · −
clpP · PQ058270.1 · 70,286–72,229 bp · −
psbN · PQ058270.1 · 74,579–74,710 bp · −
rpoA · PQ058270.1 · 78,283–79,110 bp · −
rps11 · PQ058270.1 · 79,182–79,598 bp · −
rpl36 · PQ058270.1 · 79,699–79,812 bp · −
infA · PQ058270.1 · 79,908–80,141 bp · −
rps8 · PQ058270.1 · 80,258–80,668 bp · −
rpl14 · PQ058270.1 · 80,837–81,205 bp · −
rpl16 · PQ058270.1 · 81,317–82,562 bp · −
rps3 · PQ058270.1 · 82,710–83,372 bp · −
rpl22 · PQ058270.1 · 83,387–83,830 bp · −
rps19 · PQ058270.1 · 83,890–84,168 bp · −
rpl2 · PQ058270.1 · 84,223–85,705 bp · −
rpl23 · PQ058270.1 · 85,724–86,005 bp · −
trnI-CAU · PQ058270.1 · 86,165–86,238 bp · −
trnL-CAA · PQ058270.1 · 93,742–93,822 bp · −
ndhB · PQ058270.1 · 94,356–96,567 bp · −
rps7 · PQ058270.1 · 96,842–97,309 bp · −
trnN-GUU · PQ058270.1 · 108,189–108,260 bp · −
ndhF · PQ058270.1 · 109,337–111,568 bp · −
ndhD · PQ058270.1 · 114,086–115,615 bp · −
psaC · PQ058270.1 · 115,715–115,960 bp · −
ndhE · PQ058270.1 · 116,199–116,504 bp · −
ndhG · PQ058270.1 · 116,726–117,256 bp · −
ndhI · PQ058270.1 · 117,619–118,119 bp · −
ndhA · PQ058270.1 · 118,200–120,291 bp · −
ndhH · PQ058270.1 · 120,293–121,504 bp · −
rps15 · PQ058270.1 · 121,563–121,835 bp · −
ycf1 · PQ058270.1 · 122,124–127,517 bp · −
trnR-ACG · PQ058270.1 · 128,475–128,548 bp · −
rrn5 · PQ058270.1 · 128,783–128,903 bp · −
rrn4.5 · PQ058270.1 · 129,151–129,253 bp · −
rrn23 · PQ058270.1 · 129,352–132,164 bp · −
trnA-UGC · PQ058270.1 · 132,334–133,216 bp · −
trnI-GAU · PQ058270.1 · 133,281–134,300 bp · −
ycf68 · PQ058270.1 · 133,852–134,145 bp · −
rrn16 · PQ058270.1 · 134,599–136,089 bp · −
trnV-GAC · PQ058270.1 · 136,317–136,388 bp · −
ycf15 · PQ058270.1 · 142,626–142,874 bp · −
ycf2 · PQ058270.1 · 142,965–149,780 bp · −
psbK · PQ058270.1 · 7,909–8,094 bp · +
psbI · PQ058270.1 · 8,488–8,598 bp · +
trnG-UCC · PQ058270.1 · 9,483–10,241 bp · +
trnR-UCU · PQ058270.1 · 10,416–10,487 bp · +
trnC-GCA · PQ058270.1 · 28,642–28,712 bp · +
petN · PQ058270.1 · 29,416–29,505 bp · +
trnT-GGU · PQ058270.1 · 32,211–32,282 bp · +
psbD · PQ058270.1 · 33,577–34,638 bp · +
psbC · PQ058270.1 · 34,586–36,007 bp · +
psbZ · PQ058270.1 · 36,662–36,850 bp · +
trnG-GCC · PQ058270.1 · 37,122–37,192 bp · +
trnS-GGA · PQ058270.1 · 45,968–46,054 bp · +
trnL-UAA · PQ058270.1 · 48,027–48,593 bp · +
trnF-GAA · PQ058270.1 · 48,898–48,970 bp · +
trnM-CAU · PQ058270.1 · 52,584–52,656 bp · +
rbcL · PQ058270.1 · 55,512–56,972 bp · +
accD · PQ058270.1 · 57,689–59,167 bp · +
psaI · PQ058270.1 · 59,879–59,989 bp · +
ycf4 · PQ058270.1 · 60,423–60,977 bp · +
cemA · PQ058270.1 · 61,719–62,318 bp · +
petA · PQ058270.1 · 62,525–63,487 bp · +
petL · PQ058270.1 · 66,192–66,287 bp · +
petG · PQ058270.1 · 66,463–66,576 bp · +
psaJ · PQ058270.1 · 67,280–67,414 bp · +
rpl33 · PQ058270.1 · 67,902–68,102 bp · +
rps18 · PQ058270.1 · 68,278–68,604 bp · +
rps12 · PQ058270.1 · 137,954–138,744 bp · +
psbB · PQ058270.1 · 72,693–74,219 bp · +
psbT · PQ058270.1 · 74,411–74,518 bp · +
psbH · PQ058270.1 · 74,814–75,035 bp · +
petB · PQ058270.1 · 75,161–76,530 bp · +
petD · PQ058270.1 · 76,719–77,930 bp · +
ycf2 · PQ058270.1 · 86,327–93,142 bp · +
ycf15 · PQ058270.1 · 93,233–93,481 bp · +
trnV-GAC · PQ058270.1 · 99,719–99,790 bp · +
rrn16 · PQ058270.1 · 100,018–101,508 bp · +
trnI-GAU · PQ058270.1 · 101,807–102,826 bp · +
trnA-UGC · PQ058270.1 · 102,891–103,773 bp · +
rrn23 · PQ058270.1 · 103,943–106,755 bp · +
rrn4.5 · PQ058270.1 · 106,854–106,956 bp · +
rrn5 · PQ058270.1 · 107,204–107,324 bp · +
trnR-ACG · PQ058270.1 · 107,559–107,632 bp · +
rpl32 · PQ058270.1 · 112,084–112,260 bp · +
trnL-UAG · PQ058270.1 · 112,695–112,774 bp · +
ccsA · PQ058270.1 · 112,878–113,852 bp · +
trnN-GUU · PQ058270.1 · 127,847–127,918 bp · +
rps7 · PQ058270.1 · 138,798–139,265 bp · +
ndhB · PQ058270.1 · 139,540–141,751 bp · +
trnL-CAA · PQ058270.1 · 142,285–142,365 bp · +
trnI-CAU · PQ058270.1 · 149,869–149,942 bp · +
rpl23 · PQ058270.1 · 150,102–150,383 bp · +
rpl2 · PQ058270.1 · 150,402–151,884 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria isocheila
ANNOTATED PLASTOME
PQ058270.1
151,979 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37995 75990 113984 151979 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1674 4270 2597 Locate
matK gene − 1969 3513 1545 Locate
rps16 gene − 5193 6327 1135 Locate
trnQ-UUG gene − 7513 7584 72 Locate
psbK gene + 7909 8094 186 Locate
psbI gene + 8488 8598 111 Locate
trnS-GCU gene − 8718 8805 88 Locate
trnG-UCC gene + 9483 10241 759 Locate
trnR-UCU gene + 10416 10487 72 Locate
atpA gene − 10584 12107 1524 Locate
atpF gene − 12190 13438 1249 Locate
atpH gene − 13800 14045 246 Locate
atpI gene − 15035 15778 744 Locate
rps2 gene − 16125 16961 837 Locate
rpoC2 gene − 17052 21251 4200 Locate
rpoC1 gene − 21397 24243 2847 Locate
rpoB gene − 24270 27482 3213 Locate
trnC-GCA gene + 28642 28712 71 Locate
petN gene + 29416 29505 90 Locate
psbM gene − 30593 30706 114 Locate
trnD-GUC gene − 31249 31322 74 Locate
trnY-GUA gene − 31436 31519 84 Locate
trnE-UUC gene − 31575 31647 73 Locate
trnT-GGU gene + 32211 32282 72 Locate
psbD gene + 33577 34638 1062 Locate
psbC gene + 34586 36007 1422 Locate
trnS-UGA gene − 36251 36342 92 Locate
psbZ gene + 36662 36850 189 Locate
trnG-GCC gene + 37122 37192 71 Locate
trnfM-CAU gene − 37336 37409 74 Locate
rps14 gene − 37559 37861 303 Locate
psaB gene − 37989 40193 2205 Locate
psaA gene − 40219 42471 2253 Locate
ycf3 gene − 43168 45092 1925 Locate
trnS-GGA gene + 45968 46054 87 Locate
rps4 gene − 46338 46943 606 Locate
trnT-UGU gene − 47280 47352 73 Locate
trnL-UAA gene + 48027 48593 567 Locate
trnF-GAA gene + 48898 48970 73 Locate
ndhJ gene − 49621 50097 477 Locate
ndhK gene − 50205 50882 678 Locate
ndhC gene − 50936 51298 363 Locate
trnV-UAC gene − 51755 52403 649 Locate
trnM-CAU gene + 52584 52656 73 Locate
atpE gene − 52865 53266 402 Locate
atpB gene − 53263 54759 1497 Locate
rbcL gene + 55512 56972 1461 Locate
accD gene + 57689 59167 1479 Locate
psaI gene + 59879 59989 111 Locate
ycf4 gene + 60423 60977 555 Locate
cemA gene + 61719 62318 600 Locate
petA gene + 62525 63487 963 Locate
psbJ gene − 64504 64626 123 Locate
psbL gene − 64760 64876 117 Locate
psbF gene − 64900 65019 120 Locate
psbE gene − 65034 65285 252 Locate
petL gene + 66192 66287 96 Locate
petG gene + 66463 66576 114 Locate
trnW-CCA gene − 66695 66768 74 Locate
trnP-UGG gene − 66932 67005 74 Locate
psaJ gene + 67280 67414 135 Locate
rpl33 gene + 67902 68102 201 Locate
rps18 gene + 68278 68604 327 Locate
rpl20 gene − 68843 69229 387 Locate
rps12 gene − 70013 70138 126 Locate
clpP gene − 70286 72229 1944 Locate
psbB gene + 72693 74219 1527 Locate
psbT gene + 74411 74518 108 Locate
psbN gene − 74579 74710 132 Locate
psbH gene + 74814 75035 222 Locate
petB gene + 75161 76530 1370 Locate
petD gene + 76719 77930 1212 Locate
rpoA gene − 78283 79110 828 Locate
rps11 gene − 79182 79598 417 Locate
rpl36 gene − 79699 79812 114 Locate
infA gene − 79908 80141 234 Locate
rps8 gene − 80258 80668 411 Locate
rpl14 gene − 80837 81205 369 Locate
rpl16 gene − 81317 82562 1246 Locate
rps3 gene − 82710 83372 663 Locate
rpl22 gene − 83387 83830 444 Locate
rps19 gene − 83890 84168 279 Locate
rpl2 gene − 84223 85705 1483 Locate
rpl23 gene − 85724 86005 282 Locate
trnI-CAU gene − 86165 86238 74 Locate
ycf2 gene + 86327 93142 6816 Locate
ycf15 gene + 93233 93481 249 Locate
trnL-CAA gene − 93742 93822 81 Locate
ndhB gene − 94356 96567 2212 Locate
rps7 gene − 96842 97309 468 Locate
rps12 gene − 97363 98153 791 Locate
trnV-GAC gene + 99719 99790 72 Locate
rrn16 gene + 100018 101508 1491 Locate
trnI-GAU gene + 101807 102826 1020 Locate
trnA-UGC gene + 102891 103773 883 Locate
rrn23 gene + 103943 106755 2813 Locate
rrn4.5 gene + 106854 106956 103 Locate
rrn5 gene + 107204 107324 121 Locate
trnR-ACG gene + 107559 107632 74 Locate
trnN-GUU gene − 108189 108260 72 Locate
ndhF gene − 109337 111568 2232 Locate
rpl32 gene + 112084 112260 177 Locate
trnL-UAG gene + 112695 112774 80 Locate
ccsA gene + 112878 113852 975 Locate
ndhD gene − 114086 115615 1530 Locate
psaC gene − 115715 115960 246 Locate
ndhE gene − 116199 116504 306 Locate
ndhG gene − 116726 117256 531 Locate
ndhI gene − 117619 118119 501 Locate
ndhA gene − 118200 120291 2092 Locate
ndhH gene − 120293 121504 1212 Locate
rps15 gene − 121563 121835 273 Locate
ycf1 gene − 122124 127517 5394 Locate
trnN-GUU gene + 127847 127918 72 Locate
trnR-ACG gene − 128475 128548 74 Locate
rrn5 gene − 128783 128903 121 Locate
rrn4.5 gene − 129151 129253 103 Locate
rrn23 gene − 129352 132164 2813 Locate
trnA-UGC gene − 132334 133216 883 Locate
trnI-GAU gene − 133281 134300 1020 Locate
ycf68 gene − 133852 134145 294 Locate
rrn16 gene − 134599 136089 1491 Locate
trnV-GAC gene − 136317 136388 72 Locate
rps12 gene + 137954 138744 791 Locate
rps7 gene + 138798 139265 468 Locate
ndhB gene + 139540 141751 2212 Locate
trnL-CAA gene + 142285 142365 81 Locate
ycf15 gene − 142626 142874 249 Locate
ycf2 gene − 142965 149780 6816 Locate
trnI-CAU gene + 149869 149942 74 Locate
rpl23 gene + 150102 150383 282 Locate
rpl2 gene + 150402 151884 1483 Locate
Status Available
Accession PQ058270.1
Length 151,979 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources