Coordinate-aware organelle record

Scutellaria javanica var. luzonica chloroplast genome

Available PQ058285.1 151,925 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	7	81	74
psbA	gene	photosystem-ii	−	350	1409	1059
trnK-UUU	gene	translation-rna	−	1650	4239	2589
matK	gene	other	−	1945	3481	1536
rps16	gene	ribosomal-protein	−	5120	6298	1178
trnQ-UUG	gene	translation-rna	−	7317	7389	72
psbK	gene	photosystem-ii	+	7713	7899	186
psbI	gene	photosystem-ii	+	8292	8403	111
trnS-GCU	gene	translation-rna	−	8520	8608	88
trnG-UCC	gene	translation-rna	+	9236	9997	761
trnR-UCU	gene	translation-rna	+	10167	10239	72
atpA	gene	atp-synthase	−	10335	11859	1524
atpF	gene	atp-synthase	−	11941	13169	1228
atpH	gene	atp-synthase	−	13525	13771	246
atpI	gene	atp-synthase	−	14766	15510	744
rps2	gene	ribosomal-protein	−	15863	16574	711
rpoC2	gene	rna-polymerase	−	16790	20996	4206
rpoC1	gene	rna-polymerase	−	21150	23980	2830
rpoB	gene	rna-polymerase	−	24006	27219	3213
trnC-GCA	gene	translation-rna	+	28386	28457	71
petN	gene	cytochrome	+	29168	29258	90
psbM	gene	photosystem-ii	−	30255	30360	105
trnD-GUC	gene	translation-rna	−	30886	30960	74
trnY-GUA	gene	translation-rna	−	31073	31157	84
trnE-UUC	gene	translation-rna	−	31216	31289	73
trnT-GGU	gene	translation-rna	+	31864	31936	72
psbD	gene	photosystem-ii	+	33242	34304	1062
psbC	gene	photosystem-ii	+	34251	35673	1422
trnS-UGA	gene	translation-rna	−	35909	36001	92
psbZ	gene	photosystem-ii	+	36320	36509	189
trnG-GCC	gene	translation-rna	+	36771	36842	71
trnfM-CAU	gene	translation-rna	−	36995	37069	74
rps14	gene	ribosomal-protein	−	37218	37521	303
psaB	gene	photosystem-i	−	37648	39853	2205
psaA	gene	photosystem-i	−	39878	42131	2253
ycf3	gene	other	−	42767	44679	1912
trnS-GGA	gene	translation-rna	+	45563	45650	87
rps4	gene	ribosomal-protein	−	45935	46541	606
trnT-UGU	gene	translation-rna	−	46881	46954	73
trnL-UAA	gene	translation-rna	+	47638	48200	562
trnF-GAA	gene	translation-rna	+	48506	48579	73
ndhJ	gene	nad-dehydrogenase	−	49227	49704	477
ndhK	gene	nad-dehydrogenase	−	49811	50489	678
ndhC	gene	nad-dehydrogenase	−	50541	50904	363
trnV-UAC	gene	translation-rna	−	51754	52407	653
trnM-CAU	gene	translation-rna	+	52587	52660	73
atpE	gene	atp-synthase	−	52882	53284	402
atpB	gene	atp-synthase	−	53280	54768	1488
rbcL	gene	other	+	55524	56988	1464
accD	gene	other	+	57721	59188	1467
psaI	gene	photosystem-i	+	59761	59872	111
ycf4	gene	other	+	60305	60860	555
cemA	gene	other	+	61597	62197	600
petA	gene	cytochrome	+	62403	63366	963
psbJ	gene	photosystem-ii	−	64401	64524	123
psbL	gene	photosystem-ii	−	64657	64879	222
psbF	gene	photosystem-ii	−	64797	64917	120
psbE	gene	photosystem-ii	−	64931	65183	252
petL	gene	cytochrome	+	66090	66186	96
petG	gene	cytochrome	+	66361	66475	114
trnW-CCA	gene	translation-rna	−	66593	66667	74
trnP-UGG	gene	translation-rna	−	66836	66910	74
psaJ	gene	photosystem-i	+	67182	67317	135
rpl33	gene	ribosomal-protein	+	67790	67991	201
rps18	gene	ribosomal-protein	+	68165	68471	306
rpl20	gene	ribosomal-protein	−	68707	69094	387
rps12	gene	ribosomal-protein	−	69882	98012	28130
rps12	gene	ribosomal-protein	+	69882	138703	68821
clpP	gene	other	−	70150	72081	1931
psbB	gene	photosystem-ii	+	72547	74074	1527
psbT	gene	photosystem-ii	+	74265	74367	102
psbN	gene	photosystem-ii	−	74440	74572	132
psbH	gene	photosystem-ii	+	74675	74897	222
petB	gene	cytochrome	+	75021	76389	1368
petD	gene	cytochrome	+	76577	77779	1202
rpoA	gene	rna-polymerase	−	77941	78955	1014
rps11	gene	ribosomal-protein	−	79026	79443	417
rpl36	gene	ribosomal-protein	−	79544	79658	114
infA	gene	other	−	79753	79987	234
rps8	gene	ribosomal-protein	−	80106	80517	411
rpl14	gene	ribosomal-protein	−	80688	81057	369
rpl16	gene	ribosomal-protein	−	81183	82417	1234
rps3	gene	ribosomal-protein	−	82571	83234	663
rpl22	gene	ribosomal-protein	−	83235	83691	456
rps19	gene	ribosomal-protein	−	83750	84029	279
rpl2	gene	ribosomal-protein	−	84083	85566	1483
rpl23	gene	ribosomal-protein	−	85584	85866	282
trnI-CAU	gene	translation-rna	−	86025	86099	74
ycf2	gene	other	+	86187	92997	6810
ycf15	gene	other	+	93138	93336	198
trnL-CAA	gene	translation-rna	−	93591	93672	81
ndhB	gene	nad-dehydrogenase	−	94214	96372	2158
rps7	gene	ribosomal-protein	−	96700	97168	468
trnV-GAC	gene	translation-rna	+	99589	99661	72
rrn16	gene	ribosomal-rna	+	99888	101379	1491
trnI-GAU	gene	translation-rna	+	101677	102698	1021
trnA-UGC	gene	translation-rna	+	102762	103646	884
rrn23	gene	ribosomal-rna	+	103815	106628	2813
rrn4.5	gene	ribosomal-rna	+	106726	106829	103
rrn5	gene	ribosomal-rna	+	107076	107197	121
trnR-ACG	gene	translation-rna	+	107431	107505	74
trnN-GUU	gene	translation-rna	−	108051	108123	72
ndhF	gene	nad-dehydrogenase	−	109199	111440	2241
rpl32	gene	ribosomal-protein	+	111961	112138	177
trnL-UAG	gene	translation-rna	+	112583	112663	80
ccsA	gene	other	+	112758	113733	975
ndhD	gene	nad-dehydrogenase	−	113965	115468	1503
psaC	gene	photosystem-i	−	115587	115833	246
ndhE	gene	nad-dehydrogenase	−	116089	116395	306
ndhG	gene	nad-dehydrogenase	−	116625	117156	531
ndhI	gene	nad-dehydrogenase	−	117520	118021	501
ndhA	gene	nad-dehydrogenase	−	118101	120192	2091
ndhH	gene	nad-dehydrogenase	−	120193	121375	1182
rps15	gene	ribosomal-protein	−	121477	121810	333
ycf1	gene	other	−	122036	127583	5547
trnN-GUU	gene	translation-rna	+	127801	127873	72
trnR-ACG	gene	translation-rna	−	128419	128493	74
rrn5	gene	ribosomal-rna	−	128727	128848	121
rrn4.5	gene	ribosomal-rna	−	129095	129198	103
rrn23	gene	ribosomal-rna	−	129296	132109	2813
trnA-UGC	gene	translation-rna	−	132278	133162	884
trnI-GAU	gene	translation-rna	−	133226	134247	1021
ycf68	gene	other	−	133852	134092	240
rrn16	gene	ribosomal-rna	−	134545	136036	1491
trnV-GAC	gene	translation-rna	−	136263	136335	72
rps7	gene	ribosomal-protein	+	138756	139224	468
ndhB	gene	nad-dehydrogenase	+	139552	141710	2158
trnL-CAA	gene	translation-rna	+	142252	142333	81
ycf15	gene	other	−	142588	142786	198
ycf2	gene	other	−	142927	149737	6810
trnI-CAU	gene	translation-rna	+	149825	149899	74
rpl23	gene	ribosomal-protein	+	150058	150340	282
rpl2	gene	ribosomal-protein	+	150358	151841	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomePQ058285.1DNA · accDPQ058285DNA · atpBPQ058285DNA · matKPQ058285DNA · ndhFPQ058285DNA · psbAPQ058285DNA · rbcLPQ058285DNA · rps12PQ058285DNA · ycf1PQ058285