Scutellaria javanica var. luzonica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058285.1 · 8–81 bp · −
psbA · PQ058285.1 · 351–1,409 bp · −
trnK-UUU · PQ058285.1 · 1,651–4,239 bp · −
matK · PQ058285.1 · 1,946–3,481 bp · −
rps16 · PQ058285.1 · 5,121–6,298 bp · −
trnQ-UUG · PQ058285.1 · 7,318–7,389 bp · −
trnS-GCU · PQ058285.1 · 8,521–8,608 bp · −
atpA · PQ058285.1 · 10,336–11,859 bp · −
atpF · PQ058285.1 · 11,942–13,169 bp · −
atpH · PQ058285.1 · 13,526–13,771 bp · −
atpI · PQ058285.1 · 14,767–15,510 bp · −
rps2 · PQ058285.1 · 15,864–16,574 bp · −
rpoC2 · PQ058285.1 · 16,791–20,996 bp · −
rpoC1 · PQ058285.1 · 21,151–23,980 bp · −
rpoB · PQ058285.1 · 24,007–27,219 bp · −
psbM · PQ058285.1 · 30,256–30,360 bp · −
trnD-GUC · PQ058285.1 · 30,887–30,960 bp · −
trnY-GUA · PQ058285.1 · 31,074–31,157 bp · −
trnE-UUC · PQ058285.1 · 31,217–31,289 bp · −
trnS-UGA · PQ058285.1 · 35,910–36,001 bp · −
trnfM-CAU · PQ058285.1 · 36,996–37,069 bp · −
rps14 · PQ058285.1 · 37,219–37,521 bp · −
psaB · PQ058285.1 · 37,649–39,853 bp · −
psaA · PQ058285.1 · 39,879–42,131 bp · −
ycf3 · PQ058285.1 · 42,768–44,679 bp · −
rps4 · PQ058285.1 · 45,936–46,541 bp · −
trnT-UGU · PQ058285.1 · 46,882–46,954 bp · −
ndhJ · PQ058285.1 · 49,228–49,704 bp · −
ndhK · PQ058285.1 · 49,812–50,489 bp · −
ndhC · PQ058285.1 · 50,542–50,904 bp · −
trnV-UAC · PQ058285.1 · 51,755–52,407 bp · −
atpE · PQ058285.1 · 52,883–53,284 bp · −
atpB · PQ058285.1 · 53,281–54,768 bp · −
psbJ · PQ058285.1 · 64,402–64,524 bp · −
psbL · PQ058285.1 · 64,658–64,879 bp · −
psbF · PQ058285.1 · 64,798–64,917 bp · −
psbE · PQ058285.1 · 64,932–65,183 bp · −
trnW-CCA · PQ058285.1 · 66,594–66,667 bp · −
trnP-UGG · PQ058285.1 · 66,837–66,910 bp · −
rpl20 · PQ058285.1 · 68,708–69,094 bp · −
rps12 · PQ058285.1 · 69,883–70,008 bp · −
rps12 · PQ058285.1 · 97,222–98,012 bp · −
clpP · PQ058285.1 · 70,151–72,081 bp · −
psbN · PQ058285.1 · 74,441–74,572 bp · −
rpoA · PQ058285.1 · 77,942–78,955 bp · −
rps11 · PQ058285.1 · 79,027–79,443 bp · −
rpl36 · PQ058285.1 · 79,545–79,658 bp · −
infA · PQ058285.1 · 79,754–79,987 bp · −
rps8 · PQ058285.1 · 80,107–80,517 bp · −
rpl14 · PQ058285.1 · 80,689–81,057 bp · −
rpl16 · PQ058285.1 · 81,184–82,417 bp · −
rps3 · PQ058285.1 · 82,572–83,234 bp · −
rpl22 · PQ058285.1 · 83,236–83,691 bp · −
rps19 · PQ058285.1 · 83,751–84,029 bp · −
rpl2 · PQ058285.1 · 84,084–85,566 bp · −
rpl23 · PQ058285.1 · 85,585–85,866 bp · −
trnI-CAU · PQ058285.1 · 86,026–86,099 bp · −
trnL-CAA · PQ058285.1 · 93,592–93,672 bp · −
ndhB · PQ058285.1 · 94,215–96,372 bp · −
rps7 · PQ058285.1 · 96,701–97,168 bp · −
trnN-GUU · PQ058285.1 · 108,052–108,123 bp · −
ndhF · PQ058285.1 · 109,200–111,440 bp · −
ndhD · PQ058285.1 · 113,966–115,468 bp · −
psaC · PQ058285.1 · 115,588–115,833 bp · −
ndhE · PQ058285.1 · 116,090–116,395 bp · −
ndhG · PQ058285.1 · 116,626–117,156 bp · −
ndhI · PQ058285.1 · 117,521–118,021 bp · −
ndhA · PQ058285.1 · 118,102–120,192 bp · −
ndhH · PQ058285.1 · 120,194–121,375 bp · −
rps15 · PQ058285.1 · 121,478–121,810 bp · −
ycf1 · PQ058285.1 · 122,037–127,583 bp · −
trnR-ACG · PQ058285.1 · 128,420–128,493 bp · −
rrn5 · PQ058285.1 · 128,728–128,848 bp · −
rrn4.5 · PQ058285.1 · 129,096–129,198 bp · −
rrn23 · PQ058285.1 · 129,297–132,109 bp · −
trnA-UGC · PQ058285.1 · 132,279–133,162 bp · −
trnI-GAU · PQ058285.1 · 133,227–134,247 bp · −
ycf68 · PQ058285.1 · 133,853–134,092 bp · −
rrn16 · PQ058285.1 · 134,546–136,036 bp · −
trnV-GAC · PQ058285.1 · 136,264–136,335 bp · −
ycf15 · PQ058285.1 · 142,589–142,786 bp · −
ycf2 · PQ058285.1 · 142,928–149,737 bp · −
psbK · PQ058285.1 · 7,714–7,899 bp · +
psbI · PQ058285.1 · 8,293–8,403 bp · +
trnG-UCC · PQ058285.1 · 9,237–9,997 bp · +
trnR-UCU · PQ058285.1 · 10,168–10,239 bp · +
trnC-GCA · PQ058285.1 · 28,387–28,457 bp · +
petN · PQ058285.1 · 29,169–29,258 bp · +
trnT-GGU · PQ058285.1 · 31,865–31,936 bp · +
psbD · PQ058285.1 · 33,243–34,304 bp · +
psbC · PQ058285.1 · 34,252–35,673 bp · +
psbZ · PQ058285.1 · 36,321–36,509 bp · +
trnG-GCC · PQ058285.1 · 36,772–36,842 bp · +
trnS-GGA · PQ058285.1 · 45,564–45,650 bp · +
trnL-UAA · PQ058285.1 · 47,639–48,200 bp · +
trnF-GAA · PQ058285.1 · 48,507–48,579 bp · +
trnM-CAU · PQ058285.1 · 52,588–52,660 bp · +
rbcL · PQ058285.1 · 55,525–56,988 bp · +
accD · PQ058285.1 · 57,722–59,188 bp · +
psaI · PQ058285.1 · 59,762–59,872 bp · +
ycf4 · PQ058285.1 · 60,306–60,860 bp · +
cemA · PQ058285.1 · 61,598–62,197 bp · +
petA · PQ058285.1 · 62,404–63,366 bp · +
petL · PQ058285.1 · 66,091–66,186 bp · +
petG · PQ058285.1 · 66,362–66,475 bp · +
psaJ · PQ058285.1 · 67,183–67,317 bp · +
rpl33 · PQ058285.1 · 67,791–67,991 bp · +
rps18 · PQ058285.1 · 68,166–68,471 bp · +
rps12 · PQ058285.1 · 137,913–138,703 bp · +
psbB · PQ058285.1 · 72,548–74,074 bp · +
psbT · PQ058285.1 · 74,266–74,367 bp · +
psbH · PQ058285.1 · 74,676–74,897 bp · +
petB · PQ058285.1 · 75,022–76,389 bp · +
petD · PQ058285.1 · 76,578–77,779 bp · +
ycf2 · PQ058285.1 · 86,188–92,997 bp · +
ycf15 · PQ058285.1 · 93,139–93,336 bp · +
trnV-GAC · PQ058285.1 · 99,590–99,661 bp · +
rrn16 · PQ058285.1 · 99,889–101,379 bp · +
trnI-GAU · PQ058285.1 · 101,678–102,698 bp · +
trnA-UGC · PQ058285.1 · 102,763–103,646 bp · +
rrn23 · PQ058285.1 · 103,816–106,628 bp · +
rrn4.5 · PQ058285.1 · 106,727–106,829 bp · +
rrn5 · PQ058285.1 · 107,077–107,197 bp · +
trnR-ACG · PQ058285.1 · 107,432–107,505 bp · +
rpl32 · PQ058285.1 · 111,962–112,138 bp · +
trnL-UAG · PQ058285.1 · 112,584–112,663 bp · +
ccsA · PQ058285.1 · 112,759–113,733 bp · +
trnN-GUU · PQ058285.1 · 127,802–127,873 bp · +
rps7 · PQ058285.1 · 138,757–139,224 bp · +
ndhB · PQ058285.1 · 139,553–141,710 bp · +
trnL-CAA · PQ058285.1 · 142,253–142,333 bp · +
trnI-CAU · PQ058285.1 · 149,826–149,899 bp · +
rpl23 · PQ058285.1 · 150,059–150,340 bp · +
rpl2 · PQ058285.1 · 150,359–151,841 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria javanica var. luzonica
ANNOTATED PLASTOME
PQ058285.1
151,925 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37981 75962 113944 151925 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 8 81 74 Locate
psbA gene − 351 1409 1059 Locate
trnK-UUU gene − 1651 4239 2589 Locate
matK gene − 1946 3481 1536 Locate
rps16 gene − 5121 6298 1178 Locate
trnQ-UUG gene − 7318 7389 72 Locate
psbK gene + 7714 7899 186 Locate
psbI gene + 8293 8403 111 Locate
trnS-GCU gene − 8521 8608 88 Locate
trnG-UCC gene + 9237 9997 761 Locate
trnR-UCU gene + 10168 10239 72 Locate
atpA gene − 10336 11859 1524 Locate
atpF gene − 11942 13169 1228 Locate
atpH gene − 13526 13771 246 Locate
atpI gene − 14767 15510 744 Locate
rps2 gene − 15864 16574 711 Locate
rpoC2 gene − 16791 20996 4206 Locate
rpoC1 gene − 21151 23980 2830 Locate
rpoB gene − 24007 27219 3213 Locate
trnC-GCA gene + 28387 28457 71 Locate
petN gene + 29169 29258 90 Locate
psbM gene − 30256 30360 105 Locate
trnD-GUC gene − 30887 30960 74 Locate
trnY-GUA gene − 31074 31157 84 Locate
trnE-UUC gene − 31217 31289 73 Locate
trnT-GGU gene + 31865 31936 72 Locate
psbD gene + 33243 34304 1062 Locate
psbC gene + 34252 35673 1422 Locate
trnS-UGA gene − 35910 36001 92 Locate
psbZ gene + 36321 36509 189 Locate
trnG-GCC gene + 36772 36842 71 Locate
trnfM-CAU gene − 36996 37069 74 Locate
rps14 gene − 37219 37521 303 Locate
psaB gene − 37649 39853 2205 Locate
psaA gene − 39879 42131 2253 Locate
ycf3 gene − 42768 44679 1912 Locate
trnS-GGA gene + 45564 45650 87 Locate
rps4 gene − 45936 46541 606 Locate
trnT-UGU gene − 46882 46954 73 Locate
trnL-UAA gene + 47639 48200 562 Locate
trnF-GAA gene + 48507 48579 73 Locate
ndhJ gene − 49228 49704 477 Locate
ndhK gene − 49812 50489 678 Locate
ndhC gene − 50542 50904 363 Locate
trnV-UAC gene − 51755 52407 653 Locate
trnM-CAU gene + 52588 52660 73 Locate
atpE gene − 52883 53284 402 Locate
atpB gene − 53281 54768 1488 Locate
rbcL gene + 55525 56988 1464 Locate
accD gene + 57722 59188 1467 Locate
psaI gene + 59762 59872 111 Locate
ycf4 gene + 60306 60860 555 Locate
cemA gene + 61598 62197 600 Locate
petA gene + 62404 63366 963 Locate
psbJ gene − 64402 64524 123 Locate
psbL gene − 64658 64879 222 Locate
psbF gene − 64798 64917 120 Locate
psbE gene − 64932 65183 252 Locate
petL gene + 66091 66186 96 Locate
petG gene + 66362 66475 114 Locate
trnW-CCA gene − 66594 66667 74 Locate
trnP-UGG gene − 66837 66910 74 Locate
psaJ gene + 67183 67317 135 Locate
rpl33 gene + 67791 67991 201 Locate
rps18 gene + 68166 68471 306 Locate
rpl20 gene − 68708 69094 387 Locate
rps12 gene − 69883 70008 126 Locate
clpP gene − 70151 72081 1931 Locate
psbB gene + 72548 74074 1527 Locate
psbT gene + 74266 74367 102 Locate
psbN gene − 74441 74572 132 Locate
psbH gene + 74676 74897 222 Locate
petB gene + 75022 76389 1368 Locate
petD gene + 76578 77779 1202 Locate
rpoA gene − 77942 78955 1014 Locate
rps11 gene − 79027 79443 417 Locate
rpl36 gene − 79545 79658 114 Locate
infA gene − 79754 79987 234 Locate
rps8 gene − 80107 80517 411 Locate
rpl14 gene − 80689 81057 369 Locate
rpl16 gene − 81184 82417 1234 Locate
rps3 gene − 82572 83234 663 Locate
rpl22 gene − 83236 83691 456 Locate
rps19 gene − 83751 84029 279 Locate
rpl2 gene − 84084 85566 1483 Locate
rpl23 gene − 85585 85866 282 Locate
trnI-CAU gene − 86026 86099 74 Locate
ycf2 gene + 86188 92997 6810 Locate
ycf15 gene + 93139 93336 198 Locate
trnL-CAA gene − 93592 93672 81 Locate
ndhB gene − 94215 96372 2158 Locate
rps7 gene − 96701 97168 468 Locate
rps12 gene − 97222 98012 791 Locate
trnV-GAC gene + 99590 99661 72 Locate
rrn16 gene + 99889 101379 1491 Locate
trnI-GAU gene + 101678 102698 1021 Locate
trnA-UGC gene + 102763 103646 884 Locate
rrn23 gene + 103816 106628 2813 Locate
rrn4.5 gene + 106727 106829 103 Locate
rrn5 gene + 107077 107197 121 Locate
trnR-ACG gene + 107432 107505 74 Locate
trnN-GUU gene − 108052 108123 72 Locate
ndhF gene − 109200 111440 2241 Locate
rpl32 gene + 111962 112138 177 Locate
trnL-UAG gene + 112584 112663 80 Locate
ccsA gene + 112759 113733 975 Locate
ndhD gene − 113966 115468 1503 Locate
psaC gene − 115588 115833 246 Locate
ndhE gene − 116090 116395 306 Locate
ndhG gene − 116626 117156 531 Locate
ndhI gene − 117521 118021 501 Locate
ndhA gene − 118102 120192 2091 Locate
ndhH gene − 120194 121375 1182 Locate
rps15 gene − 121478 121810 333 Locate
ycf1 gene − 122037 127583 5547 Locate
trnN-GUU gene + 127802 127873 72 Locate
trnR-ACG gene − 128420 128493 74 Locate
rrn5 gene − 128728 128848 121 Locate
rrn4.5 gene − 129096 129198 103 Locate
rrn23 gene − 129297 132109 2813 Locate
trnA-UGC gene − 132279 133162 884 Locate
trnI-GAU gene − 133227 134247 1021 Locate
ycf68 gene − 133853 134092 240 Locate
rrn16 gene − 134546 136036 1491 Locate
trnV-GAC gene − 136264 136335 72 Locate
rps12 gene + 137913 138703 791 Locate
rps7 gene + 138757 139224 468 Locate
ndhB gene + 139553 141710 2158 Locate
trnL-CAA gene + 142253 142333 81 Locate
ycf15 gene − 142589 142786 198 Locate
ycf2 gene − 142928 149737 6810 Locate
trnI-CAU gene + 149826 149899 74 Locate
rpl23 gene + 150059 150340 282 Locate
rpl2 gene + 150359 151841 1483 Locate
Status Available
Accession PQ058285.1
Length 151,925 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources