Scutellaria javanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059314.1 · 3–76 bp · −
psbA · PQ059314.1 · 365–1,423 bp · −
trnK-UUU · PQ059314.1 · 1,657–4,245 bp · −
matK · PQ059314.1 · 1,952–3,487 bp · −
rps16 · PQ059314.1 · 5,137–6,309 bp · −
trnQ-UUG · PQ059314.1 · 7,329–7,400 bp · −
trnS-GCU · PQ059314.1 · 8,530–8,617 bp · −
atpA · PQ059314.1 · 10,398–11,921 bp · −
atpF · PQ059314.1 · 12,004–13,231 bp · −
atpH · PQ059314.1 · 13,587–13,832 bp · −
atpI · PQ059314.1 · 14,828–15,571 bp · −
rps2 · PQ059314.1 · 15,920–16,630 bp · −
rpoC2 · PQ059314.1 · 16,847–21,052 bp · −
rpoC1 · PQ059314.1 · 21,207–24,037 bp · −
rpoB · PQ059314.1 · 24,064–27,276 bp · −
psbM · PQ059314.1 · 30,309–30,413 bp · −
trnD-GUC · PQ059314.1 · 30,940–31,013 bp · −
trnY-GUA · PQ059314.1 · 31,127–31,210 bp · −
trnE-UUC · PQ059314.1 · 31,270–31,342 bp · −
trnS-UGA · PQ059314.1 · 35,963–36,054 bp · −
trnfM-CAU · PQ059314.1 · 37,059–37,132 bp · −
rps14 · PQ059314.1 · 37,282–37,584 bp · −
psaB · PQ059314.1 · 37,712–39,916 bp · −
psaA · PQ059314.1 · 39,942–42,194 bp · −
ycf3 · PQ059314.1 · 42,864–44,787 bp · −
rps4 · PQ059314.1 · 46,050–46,655 bp · −
trnT-UGU · PQ059314.1 · 46,998–47,070 bp · −
ndhJ · PQ059314.1 · 49,344–49,820 bp · −
ndhK · PQ059314.1 · 49,928–50,605 bp · −
ndhC · PQ059314.1 · 50,658–51,020 bp · −
trnV-UAC · PQ059314.1 · 51,876–52,528 bp · −
atpE · PQ059314.1 · 52,997–53,398 bp · −
atpB · PQ059314.1 · 53,395–54,882 bp · −
psbJ · PQ059314.1 · 64,485–64,607 bp · −
psbL · PQ059314.1 · 64,741–64,962 bp · −
psbF · PQ059314.1 · 64,881–65,000 bp · −
psbE · PQ059314.1 · 65,015–65,266 bp · −
trnW-CCA · PQ059314.1 · 66,678–66,751 bp · −
trnP-UGG · PQ059314.1 · 66,927–67,000 bp · −
rpl20 · PQ059314.1 · 68,797–69,183 bp · −
rps12 · PQ059314.1 · 69,984–70,097 bp · −
rps12 · PQ059314.1 · 97,299–98,089 bp · −
clpP · PQ059314.1 · 70,240–72,172 bp · −
psbN · PQ059314.1 · 74,532–74,663 bp · −
rpoA · PQ059314.1 · 78,033–79,046 bp · −
rps11 · PQ059314.1 · 79,118–79,534 bp · −
rpl36 · PQ059314.1 · 79,636–79,749 bp · −
infA · PQ059314.1 · 79,845–80,078 bp · −
rps8 · PQ059314.1 · 80,198–80,608 bp · −
rpl14 · PQ059314.1 · 80,778–81,146 bp · −
rpl16 · PQ059314.1 · 81,273–82,506 bp · −
rps3 · PQ059314.1 · 82,661–83,323 bp · −
rpl22 · PQ059314.1 · 83,325–83,780 bp · −
rps19 · PQ059314.1 · 83,840–84,118 bp · −
rpl2 · PQ059314.1 · 84,173–85,655 bp · −
rpl23 · PQ059314.1 · 85,674–85,955 bp · −
trnI-CAU · PQ059314.1 · 86,115–86,188 bp · −
trnL-CAA · PQ059314.1 · 93,669–93,749 bp · −
ndhB · PQ059314.1 · 94,292–96,449 bp · −
rps7 · PQ059314.1 · 96,778–97,245 bp · −
trnN-GUU · PQ059314.1 · 108,130–108,201 bp · −
ndhF · PQ059314.1 · 109,278–111,518 bp · −
ndhD · PQ059314.1 · 114,031–115,533 bp · −
psaC · PQ059314.1 · 115,653–115,898 bp · −
ndhE · PQ059314.1 · 116,155–116,460 bp · −
ndhG · PQ059314.1 · 116,691–117,221 bp · −
ndhI · PQ059314.1 · 117,586–118,086 bp · −
ndhA · PQ059314.1 · 118,167–120,258 bp · −
ndhH · PQ059314.1 · 120,260–121,441 bp · −
rps15 · PQ059314.1 · 121,544–121,876 bp · −
ycf1 · PQ059314.1 · 122,083–127,728 bp · −
trnR-ACG · PQ059314.1 · 128,565–128,638 bp · −
rrn5 · PQ059314.1 · 128,873–128,993 bp · −
rrn4.5 · PQ059314.1 · 129,241–129,343 bp · −
rrn23 · PQ059314.1 · 129,442–132,254 bp · −
trnA-UGC · PQ059314.1 · 132,424–133,308 bp · −
trnI-GAU · PQ059314.1 · 133,373–134,393 bp · −
ycf68 · PQ059314.1 · 133,999–134,238 bp · −
rrn16 · PQ059314.1 · 134,692–136,182 bp · −
trnV-GAC · PQ059314.1 · 136,410–136,481 bp · −
ycf15 · PQ059314.1 · 142,735–142,983 bp · −
ycf2 · PQ059314.1 · 143,074–149,871 bp · −
psbK · PQ059314.1 · 7,725–7,910 bp · +
psbI · PQ059314.1 · 8,301–8,411 bp · +
trnG-UCC · PQ059314.1 · 9,299–10,059 bp · +
trnR-UCU · PQ059314.1 · 10,230–10,301 bp · +
trnC-GCA · PQ059314.1 · 28,445–28,515 bp · +
petN · PQ059314.1 · 29,227–29,316 bp · +
trnT-GGU · PQ059314.1 · 31,918–31,989 bp · +
psbD · PQ059314.1 · 33,297–34,358 bp · +
psbC · PQ059314.1 · 34,306–35,727 bp · +
psbZ · PQ059314.1 · 36,374–36,562 bp · +
trnG-GCC · PQ059314.1 · 36,834–36,904 bp · +
trnS-GGA · PQ059314.1 · 45,678–45,764 bp · +
trnL-UAA · PQ059314.1 · 47,756–48,316 bp · +
trnF-GAA · PQ059314.1 · 48,623–48,695 bp · +
trnM-CAU · PQ059314.1 · 52,709–52,781 bp · +
rbcL · PQ059314.1 · 55,632–57,095 bp · +
accD · PQ059314.1 · 57,829–59,295 bp · +
psaI · PQ059314.1 · 59,853–59,963 bp · +
ycf4 · PQ059314.1 · 60,397–60,951 bp · +
cemA · PQ059314.1 · 61,689–62,288 bp · +
petA · PQ059314.1 · 62,495–63,457 bp · +
petL · PQ059314.1 · 66,175–66,270 bp · +
petG · PQ059314.1 · 66,446–66,559 bp · +
psaJ · PQ059314.1 · 67,209–67,406 bp · +
rpl33 · PQ059314.1 · 67,880–68,080 bp · +
rps18 · PQ059314.1 · 68,255–68,560 bp · +
rps12 · PQ059314.1 · 138,059–138,849 bp · +
psbB · PQ059314.1 · 72,639–74,165 bp · +
psbT · PQ059314.1 · 74,357–74,458 bp · +
psbH · PQ059314.1 · 74,767–74,988 bp · +
petB · PQ059314.1 · 75,113–76,480 bp · +
petD · PQ059314.1 · 76,669–77,870 bp · +
ycf2 · PQ059314.1 · 86,277–93,074 bp · +
ycf15 · PQ059314.1 · 93,165–93,413 bp · +
trnV-GAC · PQ059314.1 · 99,667–99,738 bp · +
rrn16 · PQ059314.1 · 99,966–101,456 bp · +
trnI-GAU · PQ059314.1 · 101,755–102,775 bp · +
trnA-UGC · PQ059314.1 · 102,840–103,724 bp · +
rrn23 · PQ059314.1 · 103,894–106,706 bp · +
rrn4.5 · PQ059314.1 · 106,805–106,907 bp · +
rrn5 · PQ059314.1 · 107,155–107,275 bp · +
trnR-ACG · PQ059314.1 · 107,510–107,583 bp · +
rpl32 · PQ059314.1 · 112,039–112,215 bp · +
trnL-UAG · PQ059314.1 · 112,660–112,739 bp · +
ccsA · PQ059314.1 · 112,824–113,798 bp · +
trnN-GUU · PQ059314.1 · 127,947–128,018 bp · +
rps7 · PQ059314.1 · 138,903–139,370 bp · +
ndhB · PQ059314.1 · 139,699–141,856 bp · +
trnL-CAA · PQ059314.1 · 142,399–142,479 bp · +
trnI-CAU · PQ059314.1 · 149,960–150,033 bp · +
rpl23 · PQ059314.1 · 150,193–150,474 bp · +
rpl2 · PQ059314.1 · 150,493–151,975 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria javanica
ANNOTATED PLASTOME
PQ059314.1
152,070 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38018 76035 114052 152070 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1657 4245 2589 Locate
matK gene − 1952 3487 1536 Locate
rps16 gene − 5137 6309 1173 Locate
trnQ-UUG gene − 7329 7400 72 Locate
psbK gene + 7725 7910 186 Locate
psbI gene + 8301 8411 111 Locate
trnS-GCU gene − 8530 8617 88 Locate
trnG-UCC gene + 9299 10059 761 Locate
trnR-UCU gene + 10230 10301 72 Locate
atpA gene − 10398 11921 1524 Locate
atpF gene − 12004 13231 1228 Locate
atpH gene − 13587 13832 246 Locate
atpI gene − 14828 15571 744 Locate
rps2 gene − 15920 16630 711 Locate
rpoC2 gene − 16847 21052 4206 Locate
rpoC1 gene − 21207 24037 2831 Locate
rpoB gene − 24064 27276 3213 Locate
trnC-GCA gene + 28445 28515 71 Locate
petN gene + 29227 29316 90 Locate
psbM gene − 30309 30413 105 Locate
trnD-GUC gene − 30940 31013 74 Locate
trnY-GUA gene − 31127 31210 84 Locate
trnE-UUC gene − 31270 31342 73 Locate
trnT-GGU gene + 31918 31989 72 Locate
psbD gene + 33297 34358 1062 Locate
psbC gene + 34306 35727 1422 Locate
trnS-UGA gene − 35963 36054 92 Locate
psbZ gene + 36374 36562 189 Locate
trnG-GCC gene + 36834 36904 71 Locate
trnfM-CAU gene − 37059 37132 74 Locate
rps14 gene − 37282 37584 303 Locate
psaB gene − 37712 39916 2205 Locate
psaA gene − 39942 42194 2253 Locate
ycf3 gene − 42864 44787 1924 Locate
trnS-GGA gene + 45678 45764 87 Locate
rps4 gene − 46050 46655 606 Locate
trnT-UGU gene − 46998 47070 73 Locate
trnL-UAA gene + 47756 48316 561 Locate
trnF-GAA gene + 48623 48695 73 Locate
ndhJ gene − 49344 49820 477 Locate
ndhK gene − 49928 50605 678 Locate
ndhC gene − 50658 51020 363 Locate
trnV-UAC gene − 51876 52528 653 Locate
trnM-CAU gene + 52709 52781 73 Locate
atpE gene − 52997 53398 402 Locate
atpB gene − 53395 54882 1488 Locate
rbcL gene + 55632 57095 1464 Locate
accD gene + 57829 59295 1467 Locate
psaI gene + 59853 59963 111 Locate
ycf4 gene + 60397 60951 555 Locate
cemA gene + 61689 62288 600 Locate
petA gene + 62495 63457 963 Locate
psbJ gene − 64485 64607 123 Locate
psbL gene − 64741 64962 222 Locate
psbF gene − 64881 65000 120 Locate
psbE gene − 65015 65266 252 Locate
petL gene + 66175 66270 96 Locate
petG gene + 66446 66559 114 Locate
trnW-CCA gene − 66678 66751 74 Locate
trnP-UGG gene − 66927 67000 74 Locate
psaJ gene + 67209 67406 198 Locate
rpl33 gene + 67880 68080 201 Locate
rps18 gene + 68255 68560 306 Locate
rpl20 gene − 68797 69183 387 Locate
rps12 gene − 69984 70097 114 Locate
clpP gene − 70240 72172 1933 Locate
psbB gene + 72639 74165 1527 Locate
psbT gene + 74357 74458 102 Locate
psbN gene − 74532 74663 132 Locate
psbH gene + 74767 74988 222 Locate
petB gene + 75113 76480 1368 Locate
petD gene + 76669 77870 1202 Locate
rpoA gene − 78033 79046 1014 Locate
rps11 gene − 79118 79534 417 Locate
rpl36 gene − 79636 79749 114 Locate
infA gene − 79845 80078 234 Locate
rps8 gene − 80198 80608 411 Locate
rpl14 gene − 80778 81146 369 Locate
rpl16 gene − 81273 82506 1234 Locate
rps3 gene − 82661 83323 663 Locate
rpl22 gene − 83325 83780 456 Locate
rps19 gene − 83840 84118 279 Locate
rpl2 gene − 84173 85655 1483 Locate
rpl23 gene − 85674 85955 282 Locate
trnI-CAU gene − 86115 86188 74 Locate
ycf2 gene + 86277 93074 6798 Locate
ycf15 gene + 93165 93413 249 Locate
trnL-CAA gene − 93669 93749 81 Locate
ndhB gene − 94292 96449 2158 Locate
rps7 gene − 96778 97245 468 Locate
rps12 gene − 97299 98089 791 Locate
trnV-GAC gene + 99667 99738 72 Locate
rrn16 gene + 99966 101456 1491 Locate
trnI-GAU gene + 101755 102775 1021 Locate
trnA-UGC gene + 102840 103724 885 Locate
rrn23 gene + 103894 106706 2813 Locate
rrn4.5 gene + 106805 106907 103 Locate
rrn5 gene + 107155 107275 121 Locate
trnR-ACG gene + 107510 107583 74 Locate
trnN-GUU gene − 108130 108201 72 Locate
ndhF gene − 109278 111518 2241 Locate
rpl32 gene + 112039 112215 177 Locate
trnL-UAG gene + 112660 112739 80 Locate
ccsA gene + 112824 113798 975 Locate
ndhD gene − 114031 115533 1503 Locate
psaC gene − 115653 115898 246 Locate
ndhE gene − 116155 116460 306 Locate
ndhG gene − 116691 117221 531 Locate
ndhI gene − 117586 118086 501 Locate
ndhA gene − 118167 120258 2092 Locate
ndhH gene − 120260 121441 1182 Locate
rps15 gene − 121544 121876 333 Locate
ycf1 gene − 122083 127728 5646 Locate
trnN-GUU gene + 127947 128018 72 Locate
trnR-ACG gene − 128565 128638 74 Locate
rrn5 gene − 128873 128993 121 Locate
rrn4.5 gene − 129241 129343 103 Locate
rrn23 gene − 129442 132254 2813 Locate
trnA-UGC gene − 132424 133308 885 Locate
trnI-GAU gene − 133373 134393 1021 Locate
ycf68 gene − 133999 134238 240 Locate
rrn16 gene − 134692 136182 1491 Locate
trnV-GAC gene − 136410 136481 72 Locate
rps12 gene + 138059 138849 791 Locate
rps7 gene + 138903 139370 468 Locate
ndhB gene + 139699 141856 2158 Locate
trnL-CAA gene + 142399 142479 81 Locate
ycf15 gene − 142735 142983 249 Locate
ycf2 gene − 143074 149871 6798 Locate
trnI-CAU gene + 149960 150033 74 Locate
rpl23 gene + 150193 150474 282 Locate
rpl2 gene + 150493 151975 1483 Locate
Status Available
Accession PQ059314.1
Length 152,070 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources