Scutellaria karjaginii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059195.1 · 4–77 bp · −
psbA · PQ059195.1 · 374–1,432 bp · −
trnK-UUU · PQ059195.1 · 1,674–4,255 bp · −
matK · PQ059195.1 · 1,964–3,490 bp · −
rps16 · PQ059195.1 · 5,157–6,316 bp · −
trnQ-UUG · PQ059195.1 · 7,059–7,130 bp · −
trnS-GCU · PQ059195.1 · 8,272–8,359 bp · −
atpA · PQ059195.1 · 10,161–11,684 bp · −
atpF · PQ059195.1 · 11,766–12,995 bp · −
atpH · PQ059195.1 · 13,356–13,601 bp · −
atpI · PQ059195.1 · 14,589–15,332 bp · −
rps2 · PQ059195.1 · 15,678–16,388 bp · −
rpoC2 · PQ059195.1 · 16,604–20,809 bp · −
rpoC1 · PQ059195.1 · 20,964–23,800 bp · −
rpoB · PQ059195.1 · 23,827–27,039 bp · −
psbM · PQ059195.1 · 30,084–30,188 bp · −
trnD-GUC · PQ059195.1 · 30,714–30,787 bp · −
trnY-GUA · PQ059195.1 · 30,901–30,984 bp · −
trnE-UUC · PQ059195.1 · 31,044–31,116 bp · −
trnS-UGA · PQ059195.1 · 35,735–35,826 bp · −
trnfM-CAU · PQ059195.1 · 36,824–36,897 bp · −
rps14 · PQ059195.1 · 37,052–37,354 bp · −
psaB · PQ059195.1 · 37,483–39,687 bp · −
psaA · PQ059195.1 · 39,713–41,965 bp · −
ycf3 · PQ059195.1 · 42,672–44,594 bp · −
rps4 · PQ059195.1 · 45,839–46,444 bp · −
trnT-UGU · PQ059195.1 · 46,786–46,858 bp · −
ndhJ · PQ059195.1 · 49,123–49,599 bp · −
ndhK · PQ059195.1 · 49,708–50,385 bp · −
ndhC · PQ059195.1 · 50,439–50,801 bp · −
trnV-UAC · PQ059195.1 · 51,787–52,439 bp · −
atpE · PQ059195.1 · 52,894–53,295 bp · −
atpB · PQ059195.1 · 53,292–54,788 bp · −
psbJ · PQ059195.1 · 64,527–64,649 bp · −
psbL · PQ059195.1 · 64,783–64,899 bp · −
psbF · PQ059195.1 · 64,923–65,042 bp · −
psbE · PQ059195.1 · 65,057–65,308 bp · −
trnW-CCA · PQ059195.1 · 66,689–66,762 bp · −
trnP-UGG · PQ059195.1 · 66,932–67,005 bp · −
rpl20 · PQ059195.1 · 68,811–69,197 bp · −
rps12 · PQ059195.1 · 69,992–70,105 bp · −
rps12 · PQ059195.1 · 97,250–98,040 bp · −
clpP · PQ059195.1 · 70,247–72,175 bp · −
psbN · PQ059195.1 · 74,513–74,644 bp · −
rpoA · PQ059195.1 · 78,184–79,005 bp · −
rps11 · PQ059195.1 · 79,077–79,493 bp · −
rpl36 · PQ059195.1 · 79,595–79,708 bp · −
infA · PQ059195.1 · 79,803–80,036 bp · −
rps8 · PQ059195.1 · 80,160–80,570 bp · −
rpl14 · PQ059195.1 · 80,722–81,090 bp · −
rpl16 · PQ059195.1 · 81,217–82,450 bp · −
rps3 · PQ059195.1 · 82,606–83,268 bp · −
rpl22 · PQ059195.1 · 83,270–83,725 bp · −
rps19 · PQ059195.1 · 83,785–84,063 bp · −
rpl2 · PQ059195.1 · 84,118–85,599 bp · −
rpl23 · PQ059195.1 · 85,618–85,899 bp · −
trnI-CAU · PQ059195.1 · 86,059–86,132 bp · −
trnL-CAA · PQ059195.1 · 93,620–93,700 bp · −
ndhB · PQ059195.1 · 94,243–96,454 bp · −
rps7 · PQ059195.1 · 96,729–97,196 bp · −
trnN-GUU · PQ059195.1 · 108,077–108,148 bp · −
ndhF · PQ059195.1 · 109,205–111,466 bp · −
ndhD · PQ059195.1 · 113,817–115,346 bp · −
psaC · PQ059195.1 · 115,447–115,692 bp · −
ndhE · PQ059195.1 · 115,948–116,253 bp · −
ndhG · PQ059195.1 · 116,470–117,000 bp · −
ndhI · PQ059195.1 · 117,367–117,867 bp · −
ndhA · PQ059195.1 · 117,967–120,088 bp · −
ndhH · PQ059195.1 · 120,090–121,301 bp · −
rps15 · PQ059195.1 · 121,368–121,640 bp · −
ycf1 · PQ059195.1 · 121,836–127,472 bp · −
trnR-ACG · PQ059195.1 · 128,311–128,384 bp · −
rrn5 · PQ059195.1 · 128,619–128,739 bp · −
rrn4.5 · PQ059195.1 · 128,987–129,089 bp · −
rrn23 · PQ059195.1 · 129,188–131,999 bp · −
trnA-UGC · PQ059195.1 · 132,169–133,055 bp · −
trnI-GAU · PQ059195.1 · 133,120–134,140 bp · −
ycf68 · PQ059195.1 · 133,692–133,985 bp · −
rrn16 · PQ059195.1 · 134,439–135,929 bp · −
trnV-GAC · PQ059195.1 · 136,156–136,227 bp · −
ycf15 · PQ059195.1 · 142,479–142,727 bp · −
ycf2 · PQ059195.1 · 142,818–149,618 bp · −
psbK · PQ059195.1 · 7,467–7,652 bp · +
psbI · PQ059195.1 · 8,043–8,153 bp · +
trnG-UCC · PQ059195.1 · 9,062–9,818 bp · +
trnR-UCU · PQ059195.1 · 9,993–10,064 bp · +
trnC-GCA · PQ059195.1 · 28,200–28,270 bp · +
petN · PQ059195.1 · 28,986–29,075 bp · +
trnT-GGU · PQ059195.1 · 31,692–31,763 bp · +
psbD · PQ059195.1 · 33,069–34,130 bp · +
psbC · PQ059195.1 · 34,078–35,499 bp · +
psbZ · PQ059195.1 · 36,142–36,330 bp · +
trnG-GCC · PQ059195.1 · 36,608–36,678 bp · +
trnS-GGA · PQ059195.1 · 45,477–45,563 bp · +
trnL-UAA · PQ059195.1 · 47,539–48,098 bp · +
trnF-GAA · PQ059195.1 · 48,403–48,475 bp · +
trnM-CAU · PQ059195.1 · 52,628–52,700 bp · +
rbcL · PQ059195.1 · 55,539–57,002 bp · +
accD · PQ059195.1 · 57,716–59,194 bp · +
psaI · PQ059195.1 · 59,901–60,011 bp · +
ycf4 · PQ059195.1 · 60,445–60,999 bp · +
cemA · PQ059195.1 · 61,748–62,347 bp · +
petA · PQ059195.1 · 62,554–63,516 bp · +
petL · PQ059195.1 · 66,186–66,281 bp · +
petG · PQ059195.1 · 66,457–66,570 bp · +
psaJ · PQ059195.1 · 67,214–67,411 bp · +
rpl33 · PQ059195.1 · 67,896–68,096 bp · +
rps18 · PQ059195.1 · 68,271–68,576 bp · +
rps12 · PQ059195.1 · 137,799–138,589 bp · +
psbB · PQ059195.1 · 72,627–74,153 bp · +
psbT · PQ059195.1 · 74,345–74,452 bp · +
psbH · PQ059195.1 · 74,748–74,969 bp · +
petB · PQ059195.1 · 75,094–76,462 bp · +
petD · PQ059195.1 · 76,645–77,851 bp · +
ycf2 · PQ059195.1 · 86,221–93,021 bp · +
ycf15 · PQ059195.1 · 93,112–93,360 bp · +
trnV-GAC · PQ059195.1 · 99,612–99,683 bp · +
rrn16 · PQ059195.1 · 99,910–101,400 bp · +
trnI-GAU · PQ059195.1 · 101,699–102,719 bp · +
trnA-UGC · PQ059195.1 · 102,784–103,670 bp · +
rrn23 · PQ059195.1 · 103,840–106,651 bp · +
rrn4.5 · PQ059195.1 · 106,750–106,852 bp · +
rrn5 · PQ059195.1 · 107,100–107,220 bp · +
trnR-ACG · PQ059195.1 · 107,455–107,528 bp · +
rpl32 · PQ059195.1 · 111,794–111,970 bp · +
trnL-UAG · PQ059195.1 · 112,418–112,497 bp · +
ccsA · PQ059195.1 · 112,586–113,560 bp · +
trnN-GUU · PQ059195.1 · 127,691–127,762 bp · +
rps7 · PQ059195.1 · 138,643–139,110 bp · +
ndhB · PQ059195.1 · 139,385–141,596 bp · +
trnL-CAA · PQ059195.1 · 142,139–142,219 bp · +
trnI-CAU · PQ059195.1 · 149,707–149,780 bp · +
rpl23 · PQ059195.1 · 149,940–150,221 bp · +
rpl2 · PQ059195.1 · 150,240–151,721 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria karjaginii
ANNOTATED PLASTOME
PQ059195.1
151,821 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37955 75910 113866 151821 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUG gene − 7059 7130 72 Locate
psbK gene + 7467 7652 186 Locate
psbI gene + 8043 8153 111 Locate
trnS-GCU gene − 8272 8359 88 Locate
trnG-UCC gene + 9062 9818 757 Locate
trnR-UCU gene + 9993 10064 72 Locate
atpA gene − 10161 11684 1524 Locate
atpF gene − 11766 12995 1230 Locate
atpH gene − 13356 13601 246 Locate
atpI gene − 14589 15332 744 Locate
rps2 gene − 15678 16388 711 Locate
rpoC2 gene − 16604 20809 4206 Locate
rpoC1 gene − 20964 23800 2837 Locate
rpoB gene − 23827 27039 3213 Locate
trnC-GCA gene + 28200 28270 71 Locate
petN gene + 28986 29075 90 Locate
psbM gene − 30084 30188 105 Locate
trnD-GUC gene − 30714 30787 74 Locate
trnY-GUA gene − 30901 30984 84 Locate
trnE-UUC gene − 31044 31116 73 Locate
trnT-GGU gene + 31692 31763 72 Locate
psbD gene + 33069 34130 1062 Locate
psbC gene + 34078 35499 1422 Locate
trnS-UGA gene − 35735 35826 92 Locate
psbZ gene + 36142 36330 189 Locate
trnG-GCC gene + 36608 36678 71 Locate
trnfM-CAU gene − 36824 36897 74 Locate
rps14 gene − 37052 37354 303 Locate
psaB gene − 37483 39687 2205 Locate
psaA gene − 39713 41965 2253 Locate
ycf3 gene − 42672 44594 1923 Locate
trnS-GGA gene + 45477 45563 87 Locate
rps4 gene − 45839 46444 606 Locate
trnT-UGU gene − 46786 46858 73 Locate
trnL-UAA gene + 47539 48098 560 Locate
trnF-GAA gene + 48403 48475 73 Locate
ndhJ gene − 49123 49599 477 Locate
ndhK gene − 49708 50385 678 Locate
ndhC gene − 50439 50801 363 Locate
trnV-UAC gene − 51787 52439 653 Locate
trnM-CAU gene + 52628 52700 73 Locate
atpE gene − 52894 53295 402 Locate
atpB gene − 53292 54788 1497 Locate
rbcL gene + 55539 57002 1464 Locate
accD gene + 57716 59194 1479 Locate
psaI gene + 59901 60011 111 Locate
ycf4 gene + 60445 60999 555 Locate
cemA gene + 61748 62347 600 Locate
petA gene + 62554 63516 963 Locate
psbJ gene − 64527 64649 123 Locate
psbL gene − 64783 64899 117 Locate
psbF gene − 64923 65042 120 Locate
psbE gene − 65057 65308 252 Locate
petL gene + 66186 66281 96 Locate
petG gene + 66457 66570 114 Locate
trnW-CCA gene − 66689 66762 74 Locate
trnP-UGG gene − 66932 67005 74 Locate
psaJ gene + 67214 67411 198 Locate
rpl33 gene + 67896 68096 201 Locate
rps18 gene + 68271 68576 306 Locate
rpl20 gene − 68811 69197 387 Locate
rps12 gene − 69992 70105 114 Locate
clpP gene − 70247 72175 1929 Locate
psbB gene + 72627 74153 1527 Locate
psbT gene + 74345 74452 108 Locate
psbN gene − 74513 74644 132 Locate
psbH gene + 74748 74969 222 Locate
petB gene + 75094 76462 1369 Locate
petD gene + 76645 77851 1207 Locate
rpoA gene − 78184 79005 822 Locate
rps11 gene − 79077 79493 417 Locate
rpl36 gene − 79595 79708 114 Locate
infA gene − 79803 80036 234 Locate
rps8 gene − 80160 80570 411 Locate
rpl14 gene − 80722 81090 369 Locate
rpl16 gene − 81217 82450 1234 Locate
rps3 gene − 82606 83268 663 Locate
rpl22 gene − 83270 83725 456 Locate
rps19 gene − 83785 84063 279 Locate
rpl2 gene − 84118 85599 1482 Locate
rpl23 gene − 85618 85899 282 Locate
trnI-CAU gene − 86059 86132 74 Locate
ycf2 gene + 86221 93021 6801 Locate
ycf15 gene + 93112 93360 249 Locate
trnL-CAA gene − 93620 93700 81 Locate
ndhB gene − 94243 96454 2212 Locate
rps7 gene − 96729 97196 468 Locate
rps12 gene − 97250 98040 791 Locate
trnV-GAC gene + 99612 99683 72 Locate
rrn16 gene + 99910 101400 1491 Locate
trnI-GAU gene + 101699 102719 1021 Locate
trnA-UGC gene + 102784 103670 887 Locate
rrn23 gene + 103840 106651 2812 Locate
rrn4.5 gene + 106750 106852 103 Locate
rrn5 gene + 107100 107220 121 Locate
trnR-ACG gene + 107455 107528 74 Locate
trnN-GUU gene − 108077 108148 72 Locate
ndhF gene − 109205 111466 2262 Locate
rpl32 gene + 111794 111970 177 Locate
trnL-UAG gene + 112418 112497 80 Locate
ccsA gene + 112586 113560 975 Locate
ndhD gene − 113817 115346 1530 Locate
psaC gene − 115447 115692 246 Locate
ndhE gene − 115948 116253 306 Locate
ndhG gene − 116470 117000 531 Locate
ndhI gene − 117367 117867 501 Locate
ndhA gene − 117967 120088 2122 Locate
ndhH gene − 120090 121301 1212 Locate
rps15 gene − 121368 121640 273 Locate
ycf1 gene − 121836 127472 5637 Locate
trnN-GUU gene + 127691 127762 72 Locate
trnR-ACG gene − 128311 128384 74 Locate
rrn5 gene − 128619 128739 121 Locate
rrn4.5 gene − 128987 129089 103 Locate
rrn23 gene − 129188 131999 2812 Locate
trnA-UGC gene − 132169 133055 887 Locate
trnI-GAU gene − 133120 134140 1021 Locate
ycf68 gene − 133692 133985 294 Locate
rrn16 gene − 134439 135929 1491 Locate
trnV-GAC gene − 136156 136227 72 Locate
rps12 gene + 137799 138589 791 Locate
rps7 gene + 138643 139110 468 Locate
ndhB gene + 139385 141596 2212 Locate
trnL-CAA gene + 142139 142219 81 Locate
ycf15 gene − 142479 142727 249 Locate
ycf2 gene − 142818 149618 6801 Locate
trnI-CAU gene + 149707 149780 74 Locate
rpl23 gene + 149940 150221 282 Locate
rpl2 gene + 150240 151721 1482 Locate
Status Available
Accession PQ059195.1
Length 151,821 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources