Scutellaria kotkaiensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059229.1 · 10–83 bp · −
psbA · PQ059229.1 · 381–1,439 bp · −
trnK-UUU · PQ059229.1 · 1,674–4,247 bp · −
matK · PQ059229.1 · 1,956–3,482 bp · −
rps16 · PQ059229.1 · 5,148–6,306 bp · −
trnQ-UUG · PQ059229.1 · 7,440–7,511 bp · −
trnS-GCU · PQ059229.1 · 8,636–8,723 bp · −
atpA · PQ059229.1 · 10,517–12,040 bp · −
atpF · PQ059229.1 · 12,123–13,352 bp · −
atpH · PQ059229.1 · 13,715–13,960 bp · −
atpI · PQ059229.1 · 14,948–15,691 bp · −
rps2 · PQ059229.1 · 16,037–16,747 bp · −
rpoC2 · PQ059229.1 · 16,961–21,166 bp · −
rpoC1 · PQ059229.1 · 21,321–24,162 bp · −
rpoB · PQ059229.1 · 24,189–27,401 bp · −
psbM · PQ059229.1 · 30,506–30,610 bp · −
trnD-GUC · PQ059229.1 · 31,136–31,209 bp · −
trnY-GUA · PQ059229.1 · 31,323–31,406 bp · −
trnE-UUC · PQ059229.1 · 31,466–31,538 bp · −
trnS-UGA · PQ059229.1 · 36,155–36,246 bp · −
trnfM-CAU · PQ059229.1 · 37,244–37,317 bp · −
rps14 · PQ059229.1 · 37,472–37,774 bp · −
psaB · PQ059229.1 · 37,902–40,106 bp · −
psaA · PQ059229.1 · 40,132–42,384 bp · −
ycf3 · PQ059229.1 · 43,090–45,013 bp · −
rps4 · PQ059229.1 · 46,274–46,879 bp · −
trnT-UGU · PQ059229.1 · 47,223–47,295 bp · −
ndhJ · PQ059229.1 · 49,566–50,042 bp · −
ndhK · PQ059229.1 · 50,151–50,828 bp · −
ndhC · PQ059229.1 · 50,882–51,244 bp · −
trnV-UAC · PQ059229.1 · 52,221–52,873 bp · −
atpE · PQ059229.1 · 53,328–53,729 bp · −
atpB · PQ059229.1 · 53,726–55,222 bp · −
psbJ · PQ059229.1 · 64,969–65,091 bp · −
psbL · PQ059229.1 · 65,225–65,341 bp · −
psbF · PQ059229.1 · 65,365–65,484 bp · −
psbE · PQ059229.1 · 65,499–65,750 bp · −
trnW-CCA · PQ059229.1 · 67,133–67,206 bp · −
trnP-UGG · PQ059229.1 · 67,376–67,449 bp · −
rpl20 · PQ059229.1 · 69,244–69,630 bp · −
rps12 · PQ059229.1 · 70,413–70,538 bp · −
rps12 · PQ059229.1 · 97,700–98,490 bp · −
clpP · PQ059229.1 · 70,680–72,612 bp · −
psbN · PQ059229.1 · 74,949–75,080 bp · −
rpoA · PQ059229.1 · 78,647–79,447 bp · −
rps11 · PQ059229.1 · 79,519–79,935 bp · −
rpl36 · PQ059229.1 · 80,037–80,150 bp · −
infA · PQ059229.1 · 80,245–80,478 bp · −
rps8 · PQ059229.1 · 80,601–81,011 bp · −
rpl14 · PQ059229.1 · 81,163–81,531 bp · −
rpl16 · PQ059229.1 · 81,658–82,891 bp · −
rps3 · PQ059229.1 · 83,047–83,709 bp · −
rpl22 · PQ059229.1 · 83,711–84,166 bp · −
rps19 · PQ059229.1 · 84,226–84,504 bp · −
rpl2 · PQ059229.1 · 84,559–86,040 bp · −
rpl23 · PQ059229.1 · 86,059–86,340 bp · −
trnI-CAU · PQ059229.1 · 86,500–86,573 bp · −
trnL-CAA · PQ059229.1 · 94,070–94,150 bp · −
ndhB · PQ059229.1 · 94,693–96,850 bp · −
rps7 · PQ059229.1 · 97,179–97,646 bp · −
trnN-GUU · PQ059229.1 · 108,526–108,597 bp · −
ndhF · PQ059229.1 · 109,654–111,915 bp · −
ndhD · PQ059229.1 · 114,279–115,781 bp · −
psaC · PQ059229.1 · 115,909–116,154 bp · −
ndhE · PQ059229.1 · 116,406–116,711 bp · −
ndhG · PQ059229.1 · 116,928–117,458 bp · −
ndhI · PQ059229.1 · 117,825–118,325 bp · −
ndhA · PQ059229.1 · 118,406–120,533 bp · −
ndhH · PQ059229.1 · 120,535–121,716 bp · −
rps15 · PQ059229.1 · 121,813–122,085 bp · −
ycf1 · PQ059229.1 · 122,283–127,922 bp · −
trnR-ACG · PQ059229.1 · 128,761–128,834 bp · −
rrn5 · PQ059229.1 · 129,069–129,189 bp · −
rrn4.5 · PQ059229.1 · 129,437–129,539 bp · −
rrn23 · PQ059229.1 · 129,638–132,449 bp · −
trnA-UGC · PQ059229.1 · 132,619–133,504 bp · −
trnI-GAU · PQ059229.1 · 133,569–134,589 bp · −
ycf68 · PQ059229.1 · 134,141–134,434 bp · −
rrn16 · PQ059229.1 · 134,888–136,378 bp · −
trnV-GAC · PQ059229.1 · 136,605–136,676 bp · −
ycf15 · PQ059229.1 · 142,928–143,176 bp · −
ycf2 · PQ059229.1 · 143,267–150,076 bp · −
psbK · PQ059229.1 · 7,836–8,021 bp · +
psbI · PQ059229.1 · 8,409–8,519 bp · +
trnG-UCC · PQ059229.1 · 9,418–10,174 bp · +
trnR-UCU · PQ059229.1 · 10,349–10,420 bp · +
trnC-GCA · PQ059229.1 · 28,563–28,633 bp · +
petN · PQ059229.1 · 29,349–29,438 bp · +
trnT-GGU · PQ059229.1 · 32,114–32,185 bp · +
psbD · PQ059229.1 · 33,489–34,550 bp · +
psbC · PQ059229.1 · 34,498–35,919 bp · +
psbZ · PQ059229.1 · 36,562–36,750 bp · +
trnG-GCC · PQ059229.1 · 37,029–37,099 bp · +
trnS-GGA · PQ059229.1 · 45,902–45,988 bp · +
trnL-UAA · PQ059229.1 · 47,980–48,539 bp · +
trnF-GAA · PQ059229.1 · 48,846–48,918 bp · +
trnM-CAU · PQ059229.1 · 53,062–53,134 bp · +
rbcL · PQ059229.1 · 55,973–57,436 bp · +
accD · PQ059229.1 · 58,161–59,639 bp · +
psaI · PQ059229.1 · 60,345–60,455 bp · +
ycf4 · PQ059229.1 · 60,889–61,443 bp · +
cemA · PQ059229.1 · 62,192–62,791 bp · +
petA · PQ059229.1 · 62,998–63,960 bp · +
petL · PQ059229.1 · 66,630–66,725 bp · +
petG · PQ059229.1 · 66,901–67,014 bp · +
psaJ · PQ059229.1 · 67,658–67,855 bp · +
rpl33 · PQ059229.1 · 68,331–68,531 bp · +
rps18 · PQ059229.1 · 68,705–69,010 bp · +
rps12 · PQ059229.1 · 138,248–139,038 bp · +
psbB · PQ059229.1 · 73,064–74,590 bp · +
psbT · PQ059229.1 · 74,781–74,888 bp · +
psbH · PQ059229.1 · 75,184–75,405 bp · +
petB · PQ059229.1 · 75,530–76,904 bp · +
petD · PQ059229.1 · 77,087–78,292 bp · +
ycf2 · PQ059229.1 · 86,662–93,471 bp · +
ycf15 · PQ059229.1 · 93,562–93,810 bp · +
trnV-GAC · PQ059229.1 · 100,062–100,133 bp · +
rrn16 · PQ059229.1 · 100,360–101,850 bp · +
trnI-GAU · PQ059229.1 · 102,149–103,169 bp · +
trnA-UGC · PQ059229.1 · 103,234–104,119 bp · +
rrn23 · PQ059229.1 · 104,289–107,100 bp · +
rrn4.5 · PQ059229.1 · 107,199–107,301 bp · +
rrn5 · PQ059229.1 · 107,549–107,669 bp · +
trnR-ACG · PQ059229.1 · 107,904–107,977 bp · +
rpl32 · PQ059229.1 · 112,243–112,419 bp · +
trnL-UAG · PQ059229.1 · 112,866–112,945 bp · +
ccsA · PQ059229.1 · 113,048–114,022 bp · +
trnN-GUU · PQ059229.1 · 128,141–128,212 bp · +
rps7 · PQ059229.1 · 139,092–139,559 bp · +
ndhB · PQ059229.1 · 139,888–142,045 bp · +
trnL-CAA · PQ059229.1 · 142,588–142,668 bp · +
trnI-CAU · PQ059229.1 · 150,165–150,238 bp · +
rpl23 · PQ059229.1 · 150,398–150,679 bp · +
rpl2 · PQ059229.1 · 150,698–152,179 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria kotkaiensis
ANNOTATED PLASTOME
PQ059229.1
152,279 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38070 76140 114209 152279 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1674 4247 2574 Locate
matK gene − 1956 3482 1527 Locate
rps16 gene − 5148 6306 1159 Locate
trnQ-UUG gene − 7440 7511 72 Locate
psbK gene + 7836 8021 186 Locate
psbI gene + 8409 8519 111 Locate
trnS-GCU gene − 8636 8723 88 Locate
trnG-UCC gene + 9418 10174 757 Locate
trnR-UCU gene + 10349 10420 72 Locate
atpA gene − 10517 12040 1524 Locate
atpF gene − 12123 13352 1230 Locate
atpH gene − 13715 13960 246 Locate
atpI gene − 14948 15691 744 Locate
rps2 gene − 16037 16747 711 Locate
rpoC2 gene − 16961 21166 4206 Locate
rpoC1 gene − 21321 24162 2842 Locate
rpoB gene − 24189 27401 3213 Locate
trnC-GCA gene + 28563 28633 71 Locate
petN gene + 29349 29438 90 Locate
psbM gene − 30506 30610 105 Locate
trnD-GUC gene − 31136 31209 74 Locate
trnY-GUA gene − 31323 31406 84 Locate
trnE-UUC gene − 31466 31538 73 Locate
trnT-GGU gene + 32114 32185 72 Locate
psbD gene + 33489 34550 1062 Locate
psbC gene + 34498 35919 1422 Locate
trnS-UGA gene − 36155 36246 92 Locate
psbZ gene + 36562 36750 189 Locate
trnG-GCC gene + 37029 37099 71 Locate
trnfM-CAU gene − 37244 37317 74 Locate
rps14 gene − 37472 37774 303 Locate
psaB gene − 37902 40106 2205 Locate
psaA gene − 40132 42384 2253 Locate
ycf3 gene − 43090 45013 1924 Locate
trnS-GGA gene + 45902 45988 87 Locate
rps4 gene − 46274 46879 606 Locate
trnT-UGU gene − 47223 47295 73 Locate
trnL-UAA gene + 47980 48539 560 Locate
trnF-GAA gene + 48846 48918 73 Locate
ndhJ gene − 49566 50042 477 Locate
ndhK gene − 50151 50828 678 Locate
ndhC gene − 50882 51244 363 Locate
trnV-UAC gene − 52221 52873 653 Locate
trnM-CAU gene + 53062 53134 73 Locate
atpE gene − 53328 53729 402 Locate
atpB gene − 53726 55222 1497 Locate
rbcL gene + 55973 57436 1464 Locate
accD gene + 58161 59639 1479 Locate
psaI gene + 60345 60455 111 Locate
ycf4 gene + 60889 61443 555 Locate
cemA gene + 62192 62791 600 Locate
petA gene + 62998 63960 963 Locate
psbJ gene − 64969 65091 123 Locate
psbL gene − 65225 65341 117 Locate
psbF gene − 65365 65484 120 Locate
psbE gene − 65499 65750 252 Locate
petL gene + 66630 66725 96 Locate
petG gene + 66901 67014 114 Locate
trnW-CCA gene − 67133 67206 74 Locate
trnP-UGG gene − 67376 67449 74 Locate
psaJ gene + 67658 67855 198 Locate
rpl33 gene + 68331 68531 201 Locate
rps18 gene + 68705 69010 306 Locate
rpl20 gene − 69244 69630 387 Locate
rps12 gene − 70413 70538 126 Locate
clpP gene − 70680 72612 1933 Locate
psbB gene + 73064 74590 1527 Locate
psbT gene + 74781 74888 108 Locate
psbN gene − 74949 75080 132 Locate
psbH gene + 75184 75405 222 Locate
petB gene + 75530 76904 1375 Locate
petD gene + 77087 78292 1206 Locate
rpoA gene − 78647 79447 801 Locate
rps11 gene − 79519 79935 417 Locate
rpl36 gene − 80037 80150 114 Locate
infA gene − 80245 80478 234 Locate
rps8 gene − 80601 81011 411 Locate
rpl14 gene − 81163 81531 369 Locate
rpl16 gene − 81658 82891 1234 Locate
rps3 gene − 83047 83709 663 Locate
rpl22 gene − 83711 84166 456 Locate
rps19 gene − 84226 84504 279 Locate
rpl2 gene − 84559 86040 1482 Locate
rpl23 gene − 86059 86340 282 Locate
trnI-CAU gene − 86500 86573 74 Locate
ycf2 gene + 86662 93471 6810 Locate
ycf15 gene + 93562 93810 249 Locate
trnL-CAA gene − 94070 94150 81 Locate
ndhB gene − 94693 96850 2158 Locate
rps7 gene − 97179 97646 468 Locate
rps12 gene − 97700 98490 791 Locate
trnV-GAC gene + 100062 100133 72 Locate
rrn16 gene + 100360 101850 1491 Locate
trnI-GAU gene + 102149 103169 1021 Locate
trnA-UGC gene + 103234 104119 886 Locate
rrn23 gene + 104289 107100 2812 Locate
rrn4.5 gene + 107199 107301 103 Locate
rrn5 gene + 107549 107669 121 Locate
trnR-ACG gene + 107904 107977 74 Locate
trnN-GUU gene − 108526 108597 72 Locate
ndhF gene − 109654 111915 2262 Locate
rpl32 gene + 112243 112419 177 Locate
trnL-UAG gene + 112866 112945 80 Locate
ccsA gene + 113048 114022 975 Locate
ndhD gene − 114279 115781 1503 Locate
psaC gene − 115909 116154 246 Locate
ndhE gene − 116406 116711 306 Locate
ndhG gene − 116928 117458 531 Locate
ndhI gene − 117825 118325 501 Locate
ndhA gene − 118406 120533 2128 Locate
ndhH gene − 120535 121716 1182 Locate
rps15 gene − 121813 122085 273 Locate
ycf1 gene − 122283 127922 5640 Locate
trnN-GUU gene + 128141 128212 72 Locate
trnR-ACG gene − 128761 128834 74 Locate
rrn5 gene − 129069 129189 121 Locate
rrn4.5 gene − 129437 129539 103 Locate
rrn23 gene − 129638 132449 2812 Locate
trnA-UGC gene − 132619 133504 886 Locate
trnI-GAU gene − 133569 134589 1021 Locate
ycf68 gene − 134141 134434 294 Locate
rrn16 gene − 134888 136378 1491 Locate
trnV-GAC gene − 136605 136676 72 Locate
rps12 gene + 138248 139038 791 Locate
rps7 gene + 139092 139559 468 Locate
ndhB gene + 139888 142045 2158 Locate
trnL-CAA gene + 142588 142668 81 Locate
ycf15 gene − 142928 143176 249 Locate
ycf2 gene − 143267 150076 6810 Locate
trnI-CAU gene + 150165 150238 74 Locate
rpl23 gene + 150398 150679 282 Locate
rpl2 gene + 150698 152179 1482 Locate
Status Available
Accession PQ059229.1
Length 152,279 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources