Scutellaria kuramensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130062.1 · 10–83 bp · −
psbA · PZ130062.1 · 381–1,439 bp · −
trnK-UUU · PZ130062.1 · 1,681–4,323 bp · −
matK · PZ130062.1 · 2,031–3,557 bp · −
rps16 · PZ130062.1 · 5,225–6,381 bp · −
trnQ-UUG · PZ130062.1 · 7,512–7,583 bp · −
trnS-GCU · PZ130062.1 · 8,709–8,796 bp · −
atpA · PZ130062.1 · 10,614–12,137 bp · −
atpF · PZ130062.1 · 12,219–13,449 bp · −
atpH · PZ130062.1 · 13,811–14,056 bp · −
atpI · PZ130062.1 · 15,044–15,787 bp · −
rps2 · PZ130062.1 · 16,133–16,843 bp · −
rpoC2 · PZ130062.1 · 17,059–21,264 bp · −
rpoC1 · PZ130062.1 · 21,419–24,260 bp · −
rpoB · PZ130062.1 · 24,287–27,499 bp · −
psbM · PZ130062.1 · 30,517–30,621 bp · −
trnD-GUC · PZ130062.1 · 31,147–31,220 bp · −
trnY-GUA · PZ130062.1 · 31,334–31,417 bp · −
trnE-UUC · PZ130062.1 · 31,477–31,549 bp · −
trnS-UGA · PZ130062.1 · 36,166–36,257 bp · −
trnfM-CAU · PZ130062.1 · 37,258–37,331 bp · −
rps14 · PZ130062.1 · 37,481–37,783 bp · −
psaB · PZ130062.1 · 37,912–40,116 bp · −
psaA · PZ130062.1 · 40,142–42,394 bp · −
ycf3 · PZ130062.1 · 43,092–45,015 bp · −
rps4 · PZ130062.1 · 46,272–46,877 bp · −
trnT-UGU · PZ130062.1 · 47,220–47,292 bp · −
ndhJ · PZ130062.1 · 49,559–50,035 bp · −
ndhK · PZ130062.1 · 50,144–50,905 bp · −
ndhC · PZ130062.1 · 50,875–51,237 bp · −
trnV-UAC · PZ130062.1 · 52,215–52,867 bp · −
atpE · PZ130062.1 · 53,322–53,723 bp · −
atpB · PZ130062.1 · 53,720–55,216 bp · −
psbJ · PZ130062.1 · 64,962–65,084 bp · −
psbL · PZ130062.1 · 65,218–65,334 bp · −
psbF · PZ130062.1 · 65,358–65,477 bp · −
psbE · PZ130062.1 · 65,492–65,743 bp · −
trnW-CCA · PZ130062.1 · 67,122–67,195 bp · −
trnP-UGG · PZ130062.1 · 67,365–67,438 bp · −
rpl20 · PZ130062.1 · 69,237–69,623 bp · −
rps12 · PZ130062.1 · 70,406–70,531 bp · −
rps12 · PZ130062.1 · 97,695–98,485 bp · −
clpP · PZ130062.1 · 70,673–72,603 bp · −
psbN · PZ130062.1 · 74,947–75,078 bp · −
rpoA · PZ130062.1 · 78,642–79,442 bp · −
rps11 · PZ130062.1 · 79,514–79,930 bp · −
rpl36 · PZ130062.1 · 80,032–80,145 bp · −
infA · PZ130062.1 · 80,240–80,473 bp · −
rps8 · PZ130062.1 · 80,596–81,006 bp · −
rpl14 · PZ130062.1 · 81,158–81,526 bp · −
rpl16 · PZ130062.1 · 81,653–82,886 bp · −
rps3 · PZ130062.1 · 83,042–83,704 bp · −
rpl22 · PZ130062.1 · 83,706–84,161 bp · −
rps19 · PZ130062.1 · 84,221–84,499 bp · −
rpl2 · PZ130062.1 · 84,554–86,035 bp · −
rpl23 · PZ130062.1 · 86,054–86,335 bp · −
trnI-CAU · PZ130062.1 · 86,495–86,568 bp · −
trnL-CAA · PZ130062.1 · 94,065–94,145 bp · −
ndhB · PZ130062.1 · 94,688–96,899 bp · −
rps7 · PZ130062.1 · 97,174–97,641 bp · −
trnN-GUU · PZ130062.1 · 108,522–108,593 bp · −
ndhF · PZ130062.1 · 109,650–111,911 bp · −
ndhD · PZ130062.1 · 114,279–115,808 bp · −
psaC · PZ130062.1 · 115,909–116,154 bp · −
ndhE · PZ130062.1 · 116,406–116,711 bp · −
ndhG · PZ130062.1 · 116,928–117,458 bp · −
ndhI · PZ130062.1 · 117,825–118,325 bp · −
ndhA · PZ130062.1 · 118,406–120,527 bp · −
ndhH · PZ130062.1 · 120,529–121,710 bp · −
rps15 · PZ130062.1 · 121,807–122,079 bp · −
ycf1 · PZ130062.1 · 122,279–127,915 bp · −
trnR-ACG · PZ130062.1 · 128,754–128,827 bp · −
rrn5 · PZ130062.1 · 129,062–129,182 bp · −
rrn4.5 · PZ130062.1 · 129,430–129,532 bp · −
rrn23 · PZ130062.1 · 129,631–132,442 bp · −
trnA-UGC · PZ130062.1 · 132,612–133,499 bp · −
trnI-GAU · PZ130062.1 · 133,564–134,584 bp · −
ycf68 · PZ130062.1 · 134,136–134,429 bp · −
rrn16 · PZ130062.1 · 134,883–136,373 bp · −
trnV-GAC · PZ130062.1 · 136,600–136,671 bp · −
ycf15 · PZ130062.1 · 142,922–143,119 bp · −
ycf2 · PZ130062.1 · 143,261–150,070 bp · −
psbK · PZ130062.1 · 7,908–8,093 bp · +
psbI · PZ130062.1 · 8,481–8,591 bp · +
trnG-UCC · PZ130062.1 · 9,515–10,271 bp · +
trnR-UCU · PZ130062.1 · 10,446–10,517 bp · +
trnC-GCA · PZ130062.1 · 28,660–28,730 bp · +
petN · PZ130062.1 · 29,442–29,531 bp · +
trnT-GGU · PZ130062.1 · 32,125–32,196 bp · +
psbD · PZ130062.1 · 33,500–34,561 bp · +
psbC · PZ130062.1 · 34,509–35,930 bp · +
psbZ · PZ130062.1 · 36,573–36,761 bp · +
trnG-GCC · PZ130062.1 · 37,039–37,109 bp · +
trnS-GGA · PZ130062.1 · 45,910–45,996 bp · +
trnL-UAA · PZ130062.1 · 47,977–48,536 bp · +
trnF-GAA · PZ130062.1 · 48,846–48,918 bp · +
trnM-CAU · PZ130062.1 · 53,056–53,128 bp · +
rbcL · PZ130062.1 · 55,968–57,431 bp · +
accD · PZ130062.1 · 58,155–59,633 bp · +
psaI · PZ130062.1 · 60,340–60,450 bp · +
ycf4 · PZ130062.1 · 60,884–61,438 bp · +
cemA · PZ130062.1 · 62,187–62,786 bp · +
petA · PZ130062.1 · 62,993–63,955 bp · +
petL · PZ130062.1 · 66,619–66,714 bp · +
petG · PZ130062.1 · 66,890–67,003 bp · +
psaJ · PZ130062.1 · 67,647–67,844 bp · +
rpl33 · PZ130062.1 · 68,321–68,521 bp · +
rps18 · PZ130062.1 · 68,697–69,002 bp · +
rps12 · PZ130062.1 · 138,242–139,032 bp · +
psbB · PZ130062.1 · 73,062–74,588 bp · +
psbT · PZ130062.1 · 74,779–74,886 bp · +
psbH · PZ130062.1 · 75,182–75,403 bp · +
petB · PZ130062.1 · 75,528–76,899 bp · +
petD · PZ130062.1 · 77,082–78,287 bp · +
ycf2 · PZ130062.1 · 86,657–93,466 bp · +
ycf15 · PZ130062.1 · 93,608–93,805 bp · +
trnV-GAC · PZ130062.1 · 100,056–100,127 bp · +
rrn16 · PZ130062.1 · 100,354–101,844 bp · +
trnI-GAU · PZ130062.1 · 102,143–103,163 bp · +
trnA-UGC · PZ130062.1 · 103,228–104,115 bp · +
rrn23 · PZ130062.1 · 104,285–107,096 bp · +
rrn4.5 · PZ130062.1 · 107,195–107,297 bp · +
rrn5 · PZ130062.1 · 107,545–107,665 bp · +
trnR-ACG · PZ130062.1 · 107,900–107,973 bp · +
rpl32 · PZ130062.1 · 112,239–112,415 bp · +
trnL-UAG · PZ130062.1 · 112,864–112,943 bp · +
ccsA · PZ130062.1 · 113,048–114,022 bp · +
trnN-GUU · PZ130062.1 · 128,134–128,205 bp · +
rps7 · PZ130062.1 · 139,086–139,553 bp · +
ndhB · PZ130062.1 · 139,828–142,039 bp · +
trnL-CAA · PZ130062.1 · 142,582–142,662 bp · +
trnI-CAU · PZ130062.1 · 150,159–150,232 bp · +
rpl23 · PZ130062.1 · 150,392–150,673 bp · +
rpl2 · PZ130062.1 · 150,692–152,173 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria kuramensis
ANNOTATED PLASTOME
PZ130062.1
152,273 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38068 76136 114205 152273 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1681 4323 2643 Locate
matK gene − 2031 3557 1527 Locate
rps16 gene − 5225 6381 1157 Locate
trnQ-UUG gene − 7512 7583 72 Locate
psbK gene + 7908 8093 186 Locate
psbI gene + 8481 8591 111 Locate
trnS-GCU gene − 8709 8796 88 Locate
trnG-UCC gene + 9515 10271 757 Locate
trnR-UCU gene + 10446 10517 72 Locate
atpA gene − 10614 12137 1524 Locate
atpF gene − 12219 13449 1231 Locate
atpH gene − 13811 14056 246 Locate
atpI gene − 15044 15787 744 Locate
rps2 gene − 16133 16843 711 Locate
rpoC2 gene − 17059 21264 4206 Locate
rpoC1 gene − 21419 24260 2842 Locate
rpoB gene − 24287 27499 3213 Locate
trnC-GCA gene + 28660 28730 71 Locate
petN gene + 29442 29531 90 Locate
psbM gene − 30517 30621 105 Locate
trnD-GUC gene − 31147 31220 74 Locate
trnY-GUA gene − 31334 31417 84 Locate
trnE-UUC gene − 31477 31549 73 Locate
trnT-GGU gene + 32125 32196 72 Locate
psbD gene + 33500 34561 1062 Locate
psbC gene + 34509 35930 1422 Locate
trnS-UGA gene − 36166 36257 92 Locate
psbZ gene + 36573 36761 189 Locate
trnG-GCC gene + 37039 37109 71 Locate
trnfM-CAU gene − 37258 37331 74 Locate
rps14 gene − 37481 37783 303 Locate
psaB gene − 37912 40116 2205 Locate
psaA gene − 40142 42394 2253 Locate
ycf3 gene − 43092 45015 1924 Locate
trnS-GGA gene + 45910 45996 87 Locate
rps4 gene − 46272 46877 606 Locate
trnT-UGU gene − 47220 47292 73 Locate
trnL-UAA gene + 47977 48536 560 Locate
trnF-GAA gene + 48846 48918 73 Locate
ndhJ gene − 49559 50035 477 Locate
ndhK gene − 50144 50905 762 Locate
ndhC gene − 50875 51237 363 Locate
trnV-UAC gene − 52215 52867 653 Locate
trnM-CAU gene + 53056 53128 73 Locate
atpE gene − 53322 53723 402 Locate
atpB gene − 53720 55216 1497 Locate
rbcL gene + 55968 57431 1464 Locate
accD gene + 58155 59633 1479 Locate
psaI gene + 60340 60450 111 Locate
ycf4 gene + 60884 61438 555 Locate
cemA gene + 62187 62786 600 Locate
petA gene + 62993 63955 963 Locate
psbJ gene − 64962 65084 123 Locate
psbL gene − 65218 65334 117 Locate
psbF gene − 65358 65477 120 Locate
psbE gene − 65492 65743 252 Locate
petL gene + 66619 66714 96 Locate
petG gene + 66890 67003 114 Locate
trnW-CCA gene − 67122 67195 74 Locate
trnP-UGG gene − 67365 67438 74 Locate
psaJ gene + 67647 67844 198 Locate
rpl33 gene + 68321 68521 201 Locate
rps18 gene + 68697 69002 306 Locate
rpl20 gene − 69237 69623 387 Locate
rps12 gene − 70406 70531 126 Locate
clpP gene − 70673 72603 1931 Locate
psbB gene + 73062 74588 1527 Locate
psbT gene + 74779 74886 108 Locate
psbN gene − 74947 75078 132 Locate
psbH gene + 75182 75403 222 Locate
petB gene + 75528 76899 1372 Locate
petD gene + 77082 78287 1206 Locate
rpoA gene − 78642 79442 801 Locate
rps11 gene − 79514 79930 417 Locate
rpl36 gene − 80032 80145 114 Locate
infA gene − 80240 80473 234 Locate
rps8 gene − 80596 81006 411 Locate
rpl14 gene − 81158 81526 369 Locate
rpl16 gene − 81653 82886 1234 Locate
rps3 gene − 83042 83704 663 Locate
rpl22 gene − 83706 84161 456 Locate
rps19 gene − 84221 84499 279 Locate
rpl2 gene − 84554 86035 1482 Locate
rpl23 gene − 86054 86335 282 Locate
trnI-CAU gene − 86495 86568 74 Locate
ycf2 gene + 86657 93466 6810 Locate
ycf15 gene + 93608 93805 198 Locate
trnL-CAA gene − 94065 94145 81 Locate
ndhB gene − 94688 96899 2212 Locate
rps7 gene − 97174 97641 468 Locate
rps12 gene − 97695 98485 791 Locate
trnV-GAC gene + 100056 100127 72 Locate
rrn16 gene + 100354 101844 1491 Locate
trnI-GAU gene + 102143 103163 1021 Locate
trnA-UGC gene + 103228 104115 888 Locate
rrn23 gene + 104285 107096 2812 Locate
rrn4.5 gene + 107195 107297 103 Locate
rrn5 gene + 107545 107665 121 Locate
trnR-ACG gene + 107900 107973 74 Locate
trnN-GUU gene − 108522 108593 72 Locate
ndhF gene − 109650 111911 2262 Locate
rpl32 gene + 112239 112415 177 Locate
trnL-UAG gene + 112864 112943 80 Locate
ccsA gene + 113048 114022 975 Locate
ndhD gene − 114279 115808 1530 Locate
psaC gene − 115909 116154 246 Locate
ndhE gene − 116406 116711 306 Locate
ndhG gene − 116928 117458 531 Locate
ndhI gene − 117825 118325 501 Locate
ndhA gene − 118406 120527 2122 Locate
ndhH gene − 120529 121710 1182 Locate
rps15 gene − 121807 122079 273 Locate
ycf1 gene − 122279 127915 5637 Locate
trnN-GUU gene + 128134 128205 72 Locate
trnR-ACG gene − 128754 128827 74 Locate
rrn5 gene − 129062 129182 121 Locate
rrn4.5 gene − 129430 129532 103 Locate
rrn23 gene − 129631 132442 2812 Locate
trnA-UGC gene − 132612 133499 888 Locate
trnI-GAU gene − 133564 134584 1021 Locate
ycf68 gene − 134136 134429 294 Locate
rrn16 gene − 134883 136373 1491 Locate
trnV-GAC gene − 136600 136671 72 Locate
rps12 gene + 138242 139032 791 Locate
rps7 gene + 139086 139553 468 Locate
ndhB gene + 139828 142039 2212 Locate
trnL-CAA gene + 142582 142662 81 Locate
ycf15 gene − 142922 143119 198 Locate
ycf2 gene − 143261 150070 6810 Locate
trnI-CAU gene + 150159 150232 74 Locate
rpl23 gene + 150392 150673 282 Locate
rpl2 gene + 150692 152173 1482 Locate
Status Available
Accession PZ130062.1
Length 152,273 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources