Scutellaria laeteviolacea var. maekawae chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059359.1 · 3–76 bp · −
psbA · PQ059359.1 · 369–1,427 bp · −
trnK-UUU · PQ059359.1 · 1,669–4,249 bp · −
matK · PQ059359.1 · 1,956–3,491 bp · −
rps16 · PQ059359.1 · 5,122–6,285 bp · −
trnQ-UUG · PQ059359.1 · 7,306–7,377 bp · −
trnS-GCU · PQ059359.1 · 8,510–8,597 bp · −
atpA · PQ059359.1 · 10,266–11,789 bp · −
atpF · PQ059359.1 · 11,872–13,099 bp · −
atpH · PQ059359.1 · 13,457–13,702 bp · −
atpI · PQ059359.1 · 14,698–15,441 bp · −
rps2 · PQ059359.1 · 15,789–16,625 bp · −
rpoC2 · PQ059359.1 · 16,716–20,921 bp · −
rpoC1 · PQ059359.1 · 21,076–23,905 bp · −
rpoB · PQ059359.1 · 23,932–27,144 bp · −
psbM · PQ059359.1 · 30,182–30,286 bp · −
trnD-GUC · PQ059359.1 · 30,813–30,886 bp · −
trnY-GUA · PQ059359.1 · 31,000–31,083 bp · −
trnE-UUC · PQ059359.1 · 31,143–31,215 bp · −
trnS-UGA · PQ059359.1 · 35,833–35,924 bp · −
trnfM-CAU · PQ059359.1 · 36,928–37,001 bp · −
rps14 · PQ059359.1 · 37,151–37,453 bp · −
psaB · PQ059359.1 · 37,581–39,785 bp · −
psaA · PQ059359.1 · 39,811–42,063 bp · −
ycf3 · PQ059359.1 · 42,735–44,657 bp · −
rps4 · PQ059359.1 · 45,897–46,502 bp · −
trnT-UGU · PQ059359.1 · 46,850–46,922 bp · −
ndhJ · PQ059359.1 · 49,190–49,666 bp · −
ndhK · PQ059359.1 · 49,774–50,451 bp · −
ndhC · PQ059359.1 · 50,504–50,866 bp · −
trnV-UAC · PQ059359.1 · 51,704–52,356 bp · −
atpE · PQ059359.1 · 52,825–53,226 bp · −
atpB · PQ059359.1 · 53,223–54,710 bp · −
psbJ · PQ059359.1 · 64,312–64,434 bp · −
psbL · PQ059359.1 · 64,568–64,684 bp · −
psbF · PQ059359.1 · 64,708–64,827 bp · −
psbE · PQ059359.1 · 64,842–65,093 bp · −
trnW-CCA · PQ059359.1 · 66,497–66,570 bp · −
trnP-UGG · PQ059359.1 · 66,740–66,813 bp · −
rpl20 · PQ059359.1 · 68,613–68,999 bp · −
rps12 · PQ059359.1 · 69,800–69,913 bp · −
rps12 · PQ059359.1 · 97,133–97,923 bp · −
clpP · PQ059359.1 · 70,048–71,991 bp · −
psbN · PQ059359.1 · 74,351–74,482 bp · −
rpoA · PQ059359.1 · 77,853–78,866 bp · −
rps11 · PQ059359.1 · 78,938–79,354 bp · −
rpl36 · PQ059359.1 · 79,456–79,569 bp · −
infA · PQ059359.1 · 79,665–79,898 bp · −
rps8 · PQ059359.1 · 80,018–80,428 bp · −
rpl14 · PQ059359.1 · 80,599–80,967 bp · −
rpl16 · PQ059359.1 · 81,094–82,328 bp · −
rps3 · PQ059359.1 · 82,483–83,145 bp · −
rpl22 · PQ059359.1 · 83,147–83,602 bp · −
rps19 · PQ059359.1 · 83,662–83,940 bp · −
rpl2 · PQ059359.1 · 83,995–85,477 bp · −
rpl23 · PQ059359.1 · 85,496–85,777 bp · −
trnI-CAU · PQ059359.1 · 85,937–86,010 bp · −
trnL-CAA · PQ059359.1 · 93,503–93,583 bp · −
ndhB · PQ059359.1 · 94,126–96,283 bp · −
rps7 · PQ059359.1 · 96,612–97,079 bp · −
trnN-GUU · PQ059359.1 · 107,954–108,025 bp · −
ndhF · PQ059359.1 · 109,102–111,342 bp · −
ndhD · PQ059359.1 · 113,858–115,360 bp · −
psaC · PQ059359.1 · 115,481–115,726 bp · −
ndhE · PQ059359.1 · 115,983–116,288 bp · −
ndhG · PQ059359.1 · 116,509–117,039 bp · −
ndhI · PQ059359.1 · 117,404–117,904 bp · −
ndhA · PQ059359.1 · 117,985–120,075 bp · −
ndhH · PQ059359.1 · 120,077–121,288 bp · −
rps15 · PQ059359.1 · 121,361–121,693 bp · −
ycf1 · PQ059359.1 · 121,900–127,545 bp · −
trnR-ACG · PQ059359.1 · 128,382–128,455 bp · −
rrn5 · PQ059359.1 · 128,690–128,810 bp · −
rrn4.5 · PQ059359.1 · 129,058–129,160 bp · −
rrn23 · PQ059359.1 · 129,259–132,071 bp · −
trnA-UGC · PQ059359.1 · 132,241–133,123 bp · −
trnI-GAU · PQ059359.1 · 133,188–134,208 bp · −
ycf68 · PQ059359.1 · 133,814–134,053 bp · −
rrn16 · PQ059359.1 · 134,507–135,997 bp · −
trnV-GAC · PQ059359.1 · 136,225–136,296 bp · −
ycf15 · PQ059359.1 · 142,542–142,790 bp · −
ycf2 · PQ059359.1 · 142,881–149,690 bp · −
psbK · PQ059359.1 · 7,702–7,887 bp · +
psbI · PQ059359.1 · 8,280–8,390 bp · +
trnG-UCC · PQ059359.1 · 9,167–9,927 bp · +
trnR-UCU · PQ059359.1 · 10,098–10,169 bp · +
trnC-GCA · PQ059359.1 · 28,325–28,395 bp · +
petN · PQ059359.1 · 29,107–29,196 bp · +
trnT-GGU · PQ059359.1 · 31,791–31,862 bp · +
psbD · PQ059359.1 · 33,165–34,226 bp · +
psbC · PQ059359.1 · 34,174–35,595 bp · +
psbZ · PQ059359.1 · 36,244–36,432 bp · +
trnG-GCC · PQ059359.1 · 36,704–36,774 bp · +
trnS-GGA · PQ059359.1 · 45,533–45,619 bp · +
trnL-UAA · PQ059359.1 · 47,608–48,168 bp · +
trnF-GAA · PQ059359.1 · 48,469–48,541 bp · +
trnM-CAU · PQ059359.1 · 52,537–52,609 bp · +
rbcL · PQ059359.1 · 55,466–56,926 bp · +
accD · PQ059359.1 · 57,649–59,115 bp · +
psaI · PQ059359.1 · 59,673–59,783 bp · +
ycf4 · PQ059359.1 · 60,217–60,771 bp · +
cemA · PQ059359.1 · 61,509–62,108 bp · +
petA · PQ059359.1 · 62,315–63,277 bp · +
petL · PQ059359.1 · 65,994–66,089 bp · +
petG · PQ059359.1 · 66,265–66,378 bp · +
psaJ · PQ059359.1 · 67,086–67,220 bp · +
rpl33 · PQ059359.1 · 67,696–67,896 bp · +
rps18 · PQ059359.1 · 68,071–68,376 bp · +
rps12 · PQ059359.1 · 137,866–138,656 bp · +
psbB · PQ059359.1 · 72,458–73,984 bp · +
psbT · PQ059359.1 · 74,176–74,277 bp · +
psbH · PQ059359.1 · 74,586–74,807 bp · +
petB · PQ059359.1 · 74,932–76,300 bp · +
petD · PQ059359.1 · 76,489–77,690 bp · +
ycf2 · PQ059359.1 · 86,099–92,908 bp · +
ycf15 · PQ059359.1 · 92,999–93,247 bp · +
trnV-GAC · PQ059359.1 · 99,493–99,564 bp · +
rrn16 · PQ059359.1 · 99,792–101,282 bp · +
trnI-GAU · PQ059359.1 · 101,581–102,601 bp · +
trnA-UGC · PQ059359.1 · 102,666–103,548 bp · +
rrn23 · PQ059359.1 · 103,718–106,530 bp · +
rrn4.5 · PQ059359.1 · 106,629–106,731 bp · +
rrn5 · PQ059359.1 · 106,979–107,099 bp · +
trnR-ACG · PQ059359.1 · 107,334–107,407 bp · +
rpl32 · PQ059359.1 · 111,863–112,039 bp · +
trnL-UAG · PQ059359.1 · 112,474–112,553 bp · +
ccsA · PQ059359.1 · 112,651–113,625 bp · +
trnN-GUU · PQ059359.1 · 127,764–127,835 bp · +
rps7 · PQ059359.1 · 138,710–139,177 bp · +
ndhB · PQ059359.1 · 139,506–141,663 bp · +
trnL-CAA · PQ059359.1 · 142,206–142,286 bp · +
trnI-CAU · PQ059359.1 · 149,779–149,852 bp · +
rpl23 · PQ059359.1 · 150,012–150,293 bp · +
rpl2 · PQ059359.1 · 150,312–151,794 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria laeteviolacea var. maekawae
ANNOTATED PLASTOME
PQ059359.1
151,889 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37972 75944 113917 151889 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1669 4249 2581 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5122 6285 1164 Locate
trnQ-UUG gene − 7306 7377 72 Locate
psbK gene + 7702 7887 186 Locate
psbI gene + 8280 8390 111 Locate
trnS-GCU gene − 8510 8597 88 Locate
trnG-UCC gene + 9167 9927 761 Locate
trnR-UCU gene + 10098 10169 72 Locate
atpA gene − 10266 11789 1524 Locate
atpF gene − 11872 13099 1228 Locate
atpH gene − 13457 13702 246 Locate
atpI gene − 14698 15441 744 Locate
rps2 gene − 15789 16625 837 Locate
rpoC2 gene − 16716 20921 4206 Locate
rpoC1 gene − 21076 23905 2830 Locate
rpoB gene − 23932 27144 3213 Locate
trnC-GCA gene + 28325 28395 71 Locate
petN gene + 29107 29196 90 Locate
psbM gene − 30182 30286 105 Locate
trnD-GUC gene − 30813 30886 74 Locate
trnY-GUA gene − 31000 31083 84 Locate
trnE-UUC gene − 31143 31215 73 Locate
trnT-GGU gene + 31791 31862 72 Locate
psbD gene + 33165 34226 1062 Locate
psbC gene + 34174 35595 1422 Locate
trnS-UGA gene − 35833 35924 92 Locate
psbZ gene + 36244 36432 189 Locate
trnG-GCC gene + 36704 36774 71 Locate
trnfM-CAU gene − 36928 37001 74 Locate
rps14 gene − 37151 37453 303 Locate
psaB gene − 37581 39785 2205 Locate
psaA gene − 39811 42063 2253 Locate
ycf3 gene − 42735 44657 1923 Locate
trnS-GGA gene + 45533 45619 87 Locate
rps4 gene − 45897 46502 606 Locate
trnT-UGU gene − 46850 46922 73 Locate
trnL-UAA gene + 47608 48168 561 Locate
trnF-GAA gene + 48469 48541 73 Locate
ndhJ gene − 49190 49666 477 Locate
ndhK gene − 49774 50451 678 Locate
ndhC gene − 50504 50866 363 Locate
trnV-UAC gene − 51704 52356 653 Locate
trnM-CAU gene + 52537 52609 73 Locate
atpE gene − 52825 53226 402 Locate
atpB gene − 53223 54710 1488 Locate
rbcL gene + 55466 56926 1461 Locate
accD gene + 57649 59115 1467 Locate
psaI gene + 59673 59783 111 Locate
ycf4 gene + 60217 60771 555 Locate
cemA gene + 61509 62108 600 Locate
petA gene + 62315 63277 963 Locate
psbJ gene − 64312 64434 123 Locate
psbL gene − 64568 64684 117 Locate
psbF gene − 64708 64827 120 Locate
psbE gene − 64842 65093 252 Locate
petL gene + 65994 66089 96 Locate
petG gene + 66265 66378 114 Locate
trnW-CCA gene − 66497 66570 74 Locate
trnP-UGG gene − 66740 66813 74 Locate
psaJ gene + 67086 67220 135 Locate
rpl33 gene + 67696 67896 201 Locate
rps18 gene + 68071 68376 306 Locate
rpl20 gene − 68613 68999 387 Locate
rps12 gene − 69800 69913 114 Locate
clpP gene − 70048 71991 1944 Locate
psbB gene + 72458 73984 1527 Locate
psbT gene + 74176 74277 102 Locate
psbN gene − 74351 74482 132 Locate
psbH gene + 74586 74807 222 Locate
petB gene + 74932 76300 1369 Locate
petD gene + 76489 77690 1202 Locate
rpoA gene − 77853 78866 1014 Locate
rps11 gene − 78938 79354 417 Locate
rpl36 gene − 79456 79569 114 Locate
infA gene − 79665 79898 234 Locate
rps8 gene − 80018 80428 411 Locate
rpl14 gene − 80599 80967 369 Locate
rpl16 gene − 81094 82328 1235 Locate
rps3 gene − 82483 83145 663 Locate
rpl22 gene − 83147 83602 456 Locate
rps19 gene − 83662 83940 279 Locate
rpl2 gene − 83995 85477 1483 Locate
rpl23 gene − 85496 85777 282 Locate
trnI-CAU gene − 85937 86010 74 Locate
ycf2 gene + 86099 92908 6810 Locate
ycf15 gene + 92999 93247 249 Locate
trnL-CAA gene − 93503 93583 81 Locate
ndhB gene − 94126 96283 2158 Locate
rps7 gene − 96612 97079 468 Locate
rps12 gene − 97133 97923 791 Locate
trnV-GAC gene + 99493 99564 72 Locate
rrn16 gene + 99792 101282 1491 Locate
trnI-GAU gene + 101581 102601 1021 Locate
trnA-UGC gene + 102666 103548 883 Locate
rrn23 gene + 103718 106530 2813 Locate
rrn4.5 gene + 106629 106731 103 Locate
rrn5 gene + 106979 107099 121 Locate
trnR-ACG gene + 107334 107407 74 Locate
trnN-GUU gene − 107954 108025 72 Locate
ndhF gene − 109102 111342 2241 Locate
rpl32 gene + 111863 112039 177 Locate
trnL-UAG gene + 112474 112553 80 Locate
ccsA gene + 112651 113625 975 Locate
ndhD gene − 113858 115360 1503 Locate
psaC gene − 115481 115726 246 Locate
ndhE gene − 115983 116288 306 Locate
ndhG gene − 116509 117039 531 Locate
ndhI gene − 117404 117904 501 Locate
ndhA gene − 117985 120075 2091 Locate
ndhH gene − 120077 121288 1212 Locate
rps15 gene − 121361 121693 333 Locate
ycf1 gene − 121900 127545 5646 Locate
trnN-GUU gene + 127764 127835 72 Locate
trnR-ACG gene − 128382 128455 74 Locate
rrn5 gene − 128690 128810 121 Locate
rrn4.5 gene − 129058 129160 103 Locate
rrn23 gene − 129259 132071 2813 Locate
trnA-UGC gene − 132241 133123 883 Locate
trnI-GAU gene − 133188 134208 1021 Locate
ycf68 gene − 133814 134053 240 Locate
rrn16 gene − 134507 135997 1491 Locate
trnV-GAC gene − 136225 136296 72 Locate
rps12 gene + 137866 138656 791 Locate
rps7 gene + 138710 139177 468 Locate
ndhB gene + 139506 141663 2158 Locate
trnL-CAA gene + 142206 142286 81 Locate
ycf15 gene − 142542 142790 249 Locate
ycf2 gene − 142881 149690 6810 Locate
trnI-CAU gene + 149779 149852 74 Locate
rpl23 gene + 150012 150293 282 Locate
rpl2 gene + 150312 151794 1483 Locate
Status Available
Accession PQ059359.1
Length 151,889 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources